mRNA_H-canaliculatus_M_contigs7947.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7947.2.1 vs.
Match: Isoleucine--tRNA (ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2M1_9PHAE) HSP 1 Score: 202 bits (513), Expect = 6.470e-58 Identity = 96/112 (85.71%), Postives = 105/112 (93.75%), Query Frame = 1
Query: 16 VFIHCSDESMKAELESLIGDETLKREPELSNGVDELRFVLMVSKINLVDSTDAVESACAENMIVAAKDSESGCVVGVSLAPGDKCERCWYQCDSVGSHEDHPTLCSRCHGVV 351
VFI+CSDE +KAELESL+GDETLKREPELSNGVD+LRFVLMVSKINLV S +AV+SACAE M VAAKDSESGCVVGVS APG+KCERCWY CDSVGSH+DHP+LCSRCHGVV
Sbjct: 961 VFIYCSDEGLKAELESLLGDETLKREPELSNGVDDLRFVLMVSKINLVSSAEAVDSACAEGMTVAAKDSESGCVVGVSRAPGNKCERCWYHCDSVGSHDDHPSLCSRCHGVV 1072
BLAST of mRNA_H-canaliculatus_M_contigs7947.2.1 vs.
Match: Isoleucine--tRNA (ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNF4_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.950e-24 Identity = 58/120 (48.33%), Postives = 78/120 (65.00%), Query Frame = 1
Query: 1 SLSLKVFIHCSDESMKAELESLIGD-ETLKREPELSNGVDELRFVLMVSKINLVDSTDAVESACAENMIVAAKDSESGCVVGVSLAPGD--KCERCWYQCDSVGSHEDHPTLCSRCHGVV 351
SL VFIHC D + A L ++ GD +T+ + P +NGVD+LRFVLMVS++ L+ S DAV +A A + A ESGC V V+ A G KC+RCWYQC +VG+ HP +C+RC V+
Sbjct: 880 SLEAAVFIHCEDSELLATLTAMKGDADTITQHPVSTNGVDDLRFVLMVSQVELLASRDAVAAAAAAPELHTAA-GESGCAVSVARAGGGRTKCDRCWYQCSTVGASHAHPGVCARCASVL 998
BLAST of mRNA_H-canaliculatus_M_contigs7947.2.1 vs.
Match: Isoleucine--tRNA (ligase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y2K6_9STRA) HSP 1 Score: 105 bits (263), Expect = 3.630e-24 Identity = 54/119 (45.38%), Postives = 81/119 (68.07%), Query Frame = 1
Query: 1 SLSLKVFIHCSDESMKAELESLIGDETLKREPELSNGVDELRFVLMVSKINLVDSTDAVESACAENMIVAAKDSESGCVVGVSLAPGDKCERCWYQCDSVGSHED--HPTLCSRCHGVV 351
SL +++ DE +A +E+L+GDE+L P +NGVDELR VLM+S++NLVDS+DAV ++C E +V+ K++ SG V+G++ A G KC RCW+ +VG E+ H +C RC+ V
Sbjct: 929 SLDASAYVYLEDEKKRALVENLVGDESLIYPPVKTNGVDELRTVLMISQVNLVDSSDAVAASCDEAHVVS-KETISGGVLGIAKAAGKKCARCWFHDPAVGEDEELAHSDICQRCNSAV 1046
BLAST of mRNA_H-canaliculatus_M_contigs7947.2.1 vs.
Match: Isoleucine--tRNA (ligase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BR87_THAPS) HSP 1 Score: 94.7 bits (234), Expect = 2.970e-20 Identity = 56/122 (45.90%), Postives = 70/122 (57.38%), Query Frame = 1
Query: 1 SLSLKVFIHCSDESMKAELESLIGDETLKREPELSNGVDELRFVLMVSKINLVDSTDAVESACAENMIVAAKDSESGCVVGVSLAPGDKCERCWYQCDSVGSH-----EDHPTLCSRCHGVV 351
SL +I+ +DE M+ L L GDE+L +NGVDELR LM+S++NLVDS DA+ SAC I AK SGC++GV A G KC RCW+ VG H ED LC RC +
Sbjct: 945 SLDSAAYIYTADEKMREVLNGLDGDESLITPSVKTNGVDELRTALMISQVNLVDSEDAITSACDATYI--AKGELSGCMIGVKKADGVKCGRCWFYDKEVGKHGLRYGED---LCQRCDDAI 1061
BLAST of mRNA_H-canaliculatus_M_contigs7947.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BCP2_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 2.940e-17 Identity = 45/117 (38.46%), Postives = 66/117 (56.41%), Query Frame = 1
Query: 1 SLSLKVFIHCSDESMKAELESLIGDETLKREPELSNGVDELRFVLMVSKINLVDSTDAVESACAENMIVAAKDSESGCVVGVSLAPGDKCERCWYQCDSVGSHEDHPTLCSRCHGVV 351
SL +++ D+ + + L L DE + +NGVD+LR VLM+S++++V S AV + C + ++ + ESGC+VGV A G KCERCW+ VG H LC RC V
Sbjct: 64 SLDAAAYVYAPDDRVASLLHQLESDEHIIVPSVKTNGVDDLRTVLMLSQVHVVGSEAAVTNRCDDKYML--RGGESGCIVGVMPATGTKCERCWFYDTEVGKVGPHKNLCHRCADAV 178
BLAST of mRNA_H-canaliculatus_M_contigs7947.2.1 vs.
Match: Isoleucine--tRNA (ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D918_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 5.140e-17 Identity = 46/118 (38.98%), Postives = 68/118 (57.63%), Query Frame = 1
Query: 1 SLSLKVFIHCSDESMKAELESLIGDETLKREPELSNGVDELRFVLMVSKINLVDSTDAVESACAENMIVAAKDSESGCVVGVSLAPGDKCERCWYQCDSVGSHEDHPTLCSRC-HGVV 351
SL V+++ D + L+ L+GD +LK P SNG+D+LRF+L+ S++++V + V S C E ++ D+ SG VG+ A G KC RCWY D + P +CSRC H V
Sbjct: 932 SLEAAVYVYAHDPELCKILDGLMGDNSLKYPPIRSNGIDDLRFLLLASQVHIVSTAAEVTSKC-EIVLNKGGDTASGATVGIRRASGKKCSRCWYYGDLSPADATFPHICSRCVHAVT 1048
BLAST of mRNA_H-canaliculatus_M_contigs7947.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TIX1_9VIRI) HSP 1 Score: 80.9 bits (198), Expect = 1.440e-16 Identity = 47/117 (40.17%), Postives = 62/117 (52.99%), Query Frame = 1
Query: 1 SLSLKVFIHCSDESMKAELESLIGDETLKREPELSNGVDELRFVLMVSKINLVDSTDAVESACAENMIVAAKDSESGCVVGVSLAPGDKCERCWYQCDSVGSHEDHPTLCSRCHGVV 351
SL +V +H +D + A L + +E NGVDELR+ L+VS + + DAV + C + A D +GV+ A G KCERCW +VG E HPTLCSRC VV
Sbjct: 69 SLEARVCLHATDAAGAARLAAACAEEGE------GNGVDELRYALLVSGVEMCADADAVRAECPAFVAEAEVDGLGVVTLGVTNAHGCKCERCWTYSTTVGQSERHPTLCSRCEPVV 179
BLAST of mRNA_H-canaliculatus_M_contigs7947.2.1 vs.
Match: Isoleucine--tRNA (ligase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BCM6_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 4.520e-16 Identity = 45/117 (38.46%), Postives = 66/117 (56.41%), Query Frame = 1
Query: 1 SLSLKVFIHCSDESMKAELESLIGDETLKREPELSNGVDELRFVLMVSKINLVDSTDAVESACAENMIVAAKDSESGCVVGVSLAPGDKCERCWYQCDSVGSHEDHPTLCSRCHGVV 351
SL +++ D+ + + L L DE + +NGVD+LR VLM+S++++V S AV + C + ++ + ESGC+VGV A G KCERCW+ VG H LC RC V
Sbjct: 912 SLDAAAYVYAPDDRVASLLHQLESDEHIIVPSVKTNGVDDLRTVLMLSQVHVVGSEAAVTNRCDDKYML--RGGESGCIVGVMPATGTKCERCWFYDTEVGKVGPHKNLCHRCADAV 1026
BLAST of mRNA_H-canaliculatus_M_contigs7947.2.1 vs.
Match: Isoleucine--tRNA (ligase n=1 Tax=Aphanothece sacrum FPU1 TaxID=1920663 RepID=A0A401IC51_APHSA) HSP 1 Score: 82.0 bits (201), Expect = 8.370e-16 Identity = 46/118 (38.98%), Postives = 70/118 (59.32%), Query Frame = 1
Query: 1 SLSLKVFIHCSDESMKAELESLIGDETLKREPELSNGVDELRFVLMVSKINLVDSTDAVESACAENMIVAAKDSESGCV-VGVSLAPGDKCERCWYQCDSVGSHEDHPTLCSRCHGVV 351
SL KV ++ SD+ +K +LE+ D+TL N VDELR++++ S++ LVDS + +++A + SES V VGV A G+KC+RCW VG +D PT+C RC+ +
Sbjct: 851 SLEAKVLLYVSDQDLKKQLETFNPDDTLS-----GNQVDELRYLVLASQVELVDSLETIKTADYQ--------SESDLVSVGVIKAEGEKCDRCWNYSTKVGEFKDDPTICERCNAAL 955
BLAST of mRNA_H-canaliculatus_M_contigs7947.2.1 vs.
Match: Isoleucine--tRNA (ligase n=1 Tax=Rippkaea orientalis (strain PCC 8801) TaxID=41431 RepID=SYI_RIPO1) HSP 1 Score: 80.5 bits (197), Expect = 2.900e-15 Identity = 47/118 (39.83%), Postives = 68/118 (57.63%), Query Frame = 1
Query: 1 SLSLKVFIHCSDESMKAELESLIGDETLKREPELSNGVDELRFVLMVSKINLVDSTDAVESACAENMIVAAKDSESGCV-VGVSLAPGDKCERCWYQCDSVGSHEDHPTLCSRCHGVV 351
SL KV ++ SD+ K +LES +++LK N VDELR++++ S++ LVDS +A++ A + SES V VGV A G KC+RCW VG D PT+C RC+ +
Sbjct: 851 SLDAKVLLYVSDQDFKKQLESFNPNDSLK-----GNQVDELRYLVLASQVELVDSLEAIKKADYQ--------SESELVSVGVVKAEGQKCDRCWNYSTKVGEFSDDPTICERCNAAL 955 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7947.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7947.2.1 >prot_H-canaliculatus_M_contigs7947.2.1 ID=prot_H-canaliculatus_M_contigs7947.2.1|Name=mRNA_H-canaliculatus_M_contigs7947.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=117bp SLSLKVFIHCSDESMKAELESLIGDETLKREPELSNGVDELRFVLMVSKIback to top mRNA from alignment at H-canaliculatus_M_contigs7947:983..1686+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7947.2.1 ID=mRNA_H-canaliculatus_M_contigs7947.2.1|Name=mRNA_H-canaliculatus_M_contigs7947.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=704bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7947:983..1686+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7947:983..1686+ >mRNA_H-canaliculatus_M_contigs7947.2.1 ID=mRNA_H-canaliculatus_M_contigs7947.2.1|Name=mRNA_H-canaliculatus_M_contigs7947.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=351bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7947:983..1686+ (Hapterophycus canaliculatus Oshoro7m male)back to top |