mRNA_H-canaliculatus_M_contigs7947.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7947.2.1
Unique NamemRNA_H-canaliculatus_M_contigs7947.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7947.2.1 vs.
Match: Isoleucine--tRNA (ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2M1_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 6.470e-58
Identity = 96/112 (85.71%), Postives = 105/112 (93.75%), Query Frame = 1
Query:   16 VFIHCSDESMKAELESLIGDETLKREPELSNGVDELRFVLMVSKINLVDSTDAVESACAENMIVAAKDSESGCVVGVSLAPGDKCERCWYQCDSVGSHEDHPTLCSRCHGVV 351
            VFI+CSDE +KAELESL+GDETLKREPELSNGVD+LRFVLMVSKINLV S +AV+SACAE M VAAKDSESGCVVGVS APG+KCERCWY CDSVGSH+DHP+LCSRCHGVV
Sbjct:  961 VFIYCSDEGLKAELESLLGDETLKREPELSNGVDDLRFVLMVSKINLVSSAEAVDSACAEGMTVAAKDSESGCVVGVSRAPGNKCERCWYHCDSVGSHDDHPSLCSRCHGVV 1072          
BLAST of mRNA_H-canaliculatus_M_contigs7947.2.1 vs.
Match: Isoleucine--tRNA (ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNF4_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.950e-24
Identity = 58/120 (48.33%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    1 SLSLKVFIHCSDESMKAELESLIGD-ETLKREPELSNGVDELRFVLMVSKINLVDSTDAVESACAENMIVAAKDSESGCVVGVSLAPGD--KCERCWYQCDSVGSHEDHPTLCSRCHGVV 351
            SL   VFIHC D  + A L ++ GD +T+ + P  +NGVD+LRFVLMVS++ L+ S DAV +A A   +  A   ESGC V V+ A G   KC+RCWYQC +VG+   HP +C+RC  V+
Sbjct:  880 SLEAAVFIHCEDSELLATLTAMKGDADTITQHPVSTNGVDDLRFVLMVSQVELLASRDAVAAAAAAPELHTAA-GESGCAVSVARAGGGRTKCDRCWYQCSTVGASHAHPGVCARCASVL 998          
BLAST of mRNA_H-canaliculatus_M_contigs7947.2.1 vs.
Match: Isoleucine--tRNA (ligase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y2K6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.630e-24
Identity = 54/119 (45.38%), Postives = 81/119 (68.07%), Query Frame = 1
Query:    1 SLSLKVFIHCSDESMKAELESLIGDETLKREPELSNGVDELRFVLMVSKINLVDSTDAVESACAENMIVAAKDSESGCVVGVSLAPGDKCERCWYQCDSVGSHED--HPTLCSRCHGVV 351
            SL    +++  DE  +A +E+L+GDE+L   P  +NGVDELR VLM+S++NLVDS+DAV ++C E  +V+ K++ SG V+G++ A G KC RCW+   +VG  E+  H  +C RC+  V
Sbjct:  929 SLDASAYVYLEDEKKRALVENLVGDESLIYPPVKTNGVDELRTVLMISQVNLVDSSDAVAASCDEAHVVS-KETISGGVLGIAKAAGKKCARCWFHDPAVGEDEELAHSDICQRCNSAV 1046          
BLAST of mRNA_H-canaliculatus_M_contigs7947.2.1 vs.
Match: Isoleucine--tRNA (ligase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BR87_THAPS)

HSP 1 Score: 94.7 bits (234), Expect = 2.970e-20
Identity = 56/122 (45.90%), Postives = 70/122 (57.38%), Query Frame = 1
Query:    1 SLSLKVFIHCSDESMKAELESLIGDETLKREPELSNGVDELRFVLMVSKINLVDSTDAVESACAENMIVAAKDSESGCVVGVSLAPGDKCERCWYQCDSVGSH-----EDHPTLCSRCHGVV 351
            SL    +I+ +DE M+  L  L GDE+L      +NGVDELR  LM+S++NLVDS DA+ SAC    I  AK   SGC++GV  A G KC RCW+    VG H     ED   LC RC   +
Sbjct:  945 SLDSAAYIYTADEKMREVLNGLDGDESLITPSVKTNGVDELRTALMISQVNLVDSEDAITSACDATYI--AKGELSGCMIGVKKADGVKCGRCWFYDKEVGKHGLRYGED---LCQRCDDAI 1061          
BLAST of mRNA_H-canaliculatus_M_contigs7947.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BCP2_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.940e-17
Identity = 45/117 (38.46%), Postives = 66/117 (56.41%), Query Frame = 1
Query:    1 SLSLKVFIHCSDESMKAELESLIGDETLKREPELSNGVDELRFVLMVSKINLVDSTDAVESACAENMIVAAKDSESGCVVGVSLAPGDKCERCWYQCDSVGSHEDHPTLCSRCHGVV 351
            SL    +++  D+ + + L  L  DE +      +NGVD+LR VLM+S++++V S  AV + C +  ++  +  ESGC+VGV  A G KCERCW+    VG    H  LC RC   V
Sbjct:   64 SLDAAAYVYAPDDRVASLLHQLESDEHIIVPSVKTNGVDDLRTVLMLSQVHVVGSEAAVTNRCDDKYML--RGGESGCIVGVMPATGTKCERCWFYDTEVGKVGPHKNLCHRCADAV 178          
BLAST of mRNA_H-canaliculatus_M_contigs7947.2.1 vs.
Match: Isoleucine--tRNA (ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D918_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 5.140e-17
Identity = 46/118 (38.98%), Postives = 68/118 (57.63%), Query Frame = 1
Query:    1 SLSLKVFIHCSDESMKAELESLIGDETLKREPELSNGVDELRFVLMVSKINLVDSTDAVESACAENMIVAAKDSESGCVVGVSLAPGDKCERCWYQCDSVGSHEDHPTLCSRC-HGVV 351
            SL   V+++  D  +   L+ L+GD +LK  P  SNG+D+LRF+L+ S++++V +   V S C E ++    D+ SG  VG+  A G KC RCWY  D   +    P +CSRC H V 
Sbjct:  932 SLEAAVYVYAHDPELCKILDGLMGDNSLKYPPIRSNGIDDLRFLLLASQVHIVSTAAEVTSKC-EIVLNKGGDTASGATVGIRRASGKKCSRCWYYGDLSPADATFPHICSRCVHAVT 1048          
BLAST of mRNA_H-canaliculatus_M_contigs7947.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TIX1_9VIRI)

HSP 1 Score: 80.9 bits (198), Expect = 1.440e-16
Identity = 47/117 (40.17%), Postives = 62/117 (52.99%), Query Frame = 1
Query:    1 SLSLKVFIHCSDESMKAELESLIGDETLKREPELSNGVDELRFVLMVSKINLVDSTDAVESACAENMIVAAKDSESGCVVGVSLAPGDKCERCWYQCDSVGSHEDHPTLCSRCHGVV 351
            SL  +V +H +D +  A L +   +E         NGVDELR+ L+VS + +    DAV + C   +  A  D      +GV+ A G KCERCW    +VG  E HPTLCSRC  VV
Sbjct:   69 SLEARVCLHATDAAGAARLAAACAEEGE------GNGVDELRYALLVSGVEMCADADAVRAECPAFVAEAEVDGLGVVTLGVTNAHGCKCERCWTYSTTVGQSERHPTLCSRCEPVV 179          
BLAST of mRNA_H-canaliculatus_M_contigs7947.2.1 vs.
Match: Isoleucine--tRNA (ligase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BCM6_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.520e-16
Identity = 45/117 (38.46%), Postives = 66/117 (56.41%), Query Frame = 1
Query:    1 SLSLKVFIHCSDESMKAELESLIGDETLKREPELSNGVDELRFVLMVSKINLVDSTDAVESACAENMIVAAKDSESGCVVGVSLAPGDKCERCWYQCDSVGSHEDHPTLCSRCHGVV 351
            SL    +++  D+ + + L  L  DE +      +NGVD+LR VLM+S++++V S  AV + C +  ++  +  ESGC+VGV  A G KCERCW+    VG    H  LC RC   V
Sbjct:  912 SLDAAAYVYAPDDRVASLLHQLESDEHIIVPSVKTNGVDDLRTVLMLSQVHVVGSEAAVTNRCDDKYML--RGGESGCIVGVMPATGTKCERCWFYDTEVGKVGPHKNLCHRCADAV 1026          
BLAST of mRNA_H-canaliculatus_M_contigs7947.2.1 vs.
Match: Isoleucine--tRNA (ligase n=1 Tax=Aphanothece sacrum FPU1 TaxID=1920663 RepID=A0A401IC51_APHSA)

HSP 1 Score: 82.0 bits (201), Expect = 8.370e-16
Identity = 46/118 (38.98%), Postives = 70/118 (59.32%), Query Frame = 1
Query:    1 SLSLKVFIHCSDESMKAELESLIGDETLKREPELSNGVDELRFVLMVSKINLVDSTDAVESACAENMIVAAKDSESGCV-VGVSLAPGDKCERCWYQCDSVGSHEDHPTLCSRCHGVV 351
            SL  KV ++ SD+ +K +LE+   D+TL       N VDELR++++ S++ LVDS + +++A  +        SES  V VGV  A G+KC+RCW     VG  +D PT+C RC+  +
Sbjct:  851 SLEAKVLLYVSDQDLKKQLETFNPDDTLS-----GNQVDELRYLVLASQVELVDSLETIKTADYQ--------SESDLVSVGVIKAEGEKCDRCWNYSTKVGEFKDDPTICERCNAAL 955          
BLAST of mRNA_H-canaliculatus_M_contigs7947.2.1 vs.
Match: Isoleucine--tRNA (ligase n=1 Tax=Rippkaea orientalis (strain PCC 8801) TaxID=41431 RepID=SYI_RIPO1)

HSP 1 Score: 80.5 bits (197), Expect = 2.900e-15
Identity = 47/118 (39.83%), Postives = 68/118 (57.63%), Query Frame = 1
Query:    1 SLSLKVFIHCSDESMKAELESLIGDETLKREPELSNGVDELRFVLMVSKINLVDSTDAVESACAENMIVAAKDSESGCV-VGVSLAPGDKCERCWYQCDSVGSHEDHPTLCSRCHGVV 351
            SL  KV ++ SD+  K +LES   +++LK      N VDELR++++ S++ LVDS +A++ A  +        SES  V VGV  A G KC+RCW     VG   D PT+C RC+  +
Sbjct:  851 SLDAKVLLYVSDQDFKKQLESFNPNDSLK-----GNQVDELRYLVLASQVELVDSLEAIKKADYQ--------SESELVSVGVVKAEGQKCDRCWNYSTKVGEFSDDPTICERCNAAL 955          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7947.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Isoleucine--tRNA6.470e-5885.71ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L... [more]
Isoleucine--tRNA1.950e-2448.33ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
Isoleucine--tRNA3.630e-2445.38ligase n=1 Tax=Amphiprora paludosa TaxID=265537 Re... [more]
Isoleucine--tRNA2.970e-2045.90ligase n=1 Tax=Thalassiosira pseudonana TaxID=3512... [more]
Hypothetical2.940e-1738.46protein n=1 Tax=Corethron hystrix TaxID=216773 Rep... [more]
Isoleucine--tRNA5.140e-1738.98ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=... [more]
Hypothetical1.440e-1640.17protein n=1 Tax=Prasinoderma coloniale TaxID=15613... [more]
Isoleucine--tRNA4.520e-1638.46ligase n=1 Tax=Corethron hystrix TaxID=216773 RepI... [more]
Isoleucine--tRNA8.370e-1638.98ligase n=1 Tax=Aphanothece sacrum FPU1 TaxID=19206... [more]
Isoleucine--tRNA2.900e-1539.83ligase n=1 Tax=Rippkaea orientalis (strain PCC 880... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7947contigH-canaliculatus_M_contigs7947:983..1686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2850.Phatr17198
PFAMsAnticodon_1,tRNA-synt_1
Model size351
Max annot lvl2836|Bacillariophyta
KEGG rclassRC00055,RC00523
KEGG koko:K01870
KEGG ReactionR03656
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.6e-22
EggNOG OGsCOG0060@1|root,KOG0433@2759|Eukaryota,2XBBT@2836|Bacillariophyta
Ec32 ortholog descriptionIsoleucyl-tRNA Synthetase
Ec32 orthologEc-12_001710.2
EC6.1.1.5
DescriptionBelongs to the class-I aminoacyl-tRNA synthetase family
Cds size351
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854126.8801014-CDS-H-canaliculatus_M_contigs7947:982..11291696854126.8801014-CDS-H-canaliculatus_M_contigs7947:982..1129Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7947 983..1129 +
1696854126.895443-CDS-H-canaliculatus_M_contigs7947:1482..16861696854126.895443-CDS-H-canaliculatus_M_contigs7947:1482..1686Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7947 1483..1686 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7947.2.1prot_H-canaliculatus_M_contigs7947.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7947 983..1686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7947.2.1

>prot_H-canaliculatus_M_contigs7947.2.1 ID=prot_H-canaliculatus_M_contigs7947.2.1|Name=mRNA_H-canaliculatus_M_contigs7947.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=117bp
SLSLKVFIHCSDESMKAELESLIGDETLKREPELSNGVDELRFVLMVSKI
NLVDSTDAVESACAENMIVAAKDSESGCVVGVSLAPGDKCERCWYQCDSV
GSHEDHPTLCSRCHGVV
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mRNA from alignment at H-canaliculatus_M_contigs7947:983..1686+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7947.2.1 ID=mRNA_H-canaliculatus_M_contigs7947.2.1|Name=mRNA_H-canaliculatus_M_contigs7947.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=704bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7947:983..1686+ (Hapterophycus canaliculatus Oshoro7m male)
TCTCTCTCTCTAAAGGTGTTTATCCACTGCAGCGACGAGAGCATGAAAGC GGAACTGGAAAGCCTCATCGGGGACGAAACCCTCAAGAGGGAGCCGGAGC TCAGCAACGGCGTGGACGAGCTGCGGTTTGTGCTCATGGTGTCAAAGGTC AGCGCAGTCAGTGTGATGATCATCGTGGATGCGGGACATTTCTGTAGGGA AAAGAGTCACCAAGACCAAAGGACTGCCCTCCTCTGAGACGAAATAGTTG TTTGTTCCACGAAGGGTAGCGCGGTGCTCATGCTCCCCACAGCGGGTGTC AGGACCGAAAACAAATCGATTCAGAAACAGATAGTACGATTTCTGGAATG TACGTTGAGTAAGACCGCGCAGAAGCTCCCTCAGGTCTTTTTTCGATCAC CGATTGAAAGACTCGCTTCCGCGGGTCTCGTTTTTCCCCCATCAGTTCCT CGATTATTTTACCCCCGCCCCGCCCCACGCACCCCCTCCGCGGCTCTCAG ATCAACCTCGTGGATTCCACGGACGCCGTCGAGTCCGCGTGCGCCGAGAA CATGATCGTCGCCGCCAAGGACTCCGAAAGCGGGTGCGTCGTTGGCGTAT CGCTCGCGCCGGGAGACAAGTGCGAGCGGTGCTGGTACCAGTGCGACAGC GTCGGGTCTCACGAAGACCACCCGACGCTGTGCTCGAGGTGCCACGGGGT GGTT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7947:983..1686+

>mRNA_H-canaliculatus_M_contigs7947.2.1 ID=mRNA_H-canaliculatus_M_contigs7947.2.1|Name=mRNA_H-canaliculatus_M_contigs7947.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=351bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7947:983..1686+ (Hapterophycus canaliculatus Oshoro7m male)
TCTCTCTCTCTAAAGGTGTTTATCCACTGCAGCGACGAGAGCATGAAAGC
GGAACTGGAAAGCCTCATCGGGGACGAAACCCTCAAGAGGGAGCCGGAGC
TCAGCAACGGCGTGGACGAGCTGCGGTTTGTGCTCATGGTGTCAAAGATC
AACCTCGTGGATTCCACGGACGCCGTCGAGTCCGCGTGCGCCGAGAACAT
GATCGTCGCCGCCAAGGACTCCGAAAGCGGGTGCGTCGTTGGCGTATCGC
TCGCGCCGGGAGACAAGTGCGAGCGGTGCTGGTACCAGTGCGACAGCGTC
GGGTCTCACGAAGACCACCCGACGCTGTGCTCGAGGTGCCACGGGGTGGT
T
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