mRNA_H-canaliculatus_M_contigs78141.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs78141.1.1
Unique NamemRNA_H-canaliculatus_M_contigs78141.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs78141.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356F7B9_9BACT)

HSP 1 Score: 139 bits (350), Expect = 3.940e-35
Identity = 67/162 (41.36%), Postives = 95/162 (58.64%), Query Frame = 1
Query:    1 STQQELIKDYVRDFEAAILSSNPMDEQTGYRIYIEESSWIDMHILDLFSMDADMLRLSNYFFKDKGLRLVNGPVWDSDRSLNSTDERDDDPDILVPDRRQIDPFDFSWWEKLFEIDHFDEKYRRRWHELRQGPLATNALLARVDDMANPLFEPYPREHDRWG 486
            S Q   I++Y   F  A+  +N  D   GY  YI++ SW D H+L++ + + D LRLS YF+KD+   +  GP+WD DRS+NSTD RDD+P          D F++ WW +LF+   F + YR RWHE RQGPL+   +   +D M+  L E  PR+  +WG
Sbjct:  657 SAQTTWIRNYFNAFGDALNGANFRDPVRGYAPYIDKLSWADHHMLNVLAKNVDALRLSTYFYKDRNGPIEFGPIWDFDRSMNSTDGRDDNPTTWNGTGDGTDFFNYPWWGRLFDDPDFMQLYRDRWHEFRQGPLSNTNIRNVIDTMSGQLQEAQPRDSAKWG 818          
BLAST of mRNA_H-canaliculatus_M_contigs78141.1.1 vs.
Match: LTD (domain-containing protein n=5 Tax=cellular organisms TaxID=131567 RepID=A0A424I427_9BACT)

HSP 1 Score: 137 bits (344), Expect = 2.600e-34
Identity = 69/163 (42.33%), Postives = 97/163 (59.51%), Query Frame = 1
Query:    1 STQQELIKDYVRDFEAAILSSNPMDEQTGYRIYIEESSWIDMHILDLFSMDADMLRLSNYFFKDKGLRLVNGPVWDSDRSLNSTDERDDDPDILVPDRRQIDPFDFSWWEKLFEIDHFDEKYRRRWHELRQGPLATNALLARVDDMANPLFEPYPREHDRWGE 489
            S+Q   I+DY+    AA+ + +  D  TGY  YI+  SWID H+L++ +++AD LRLS YF K +G ++  GP+WD DRS++STD RDD+P            F F WW +LF  ++F +KY  R+ ELR GP AT  + A +D MA  L E   R   RW +
Sbjct:  655 SSQASWIRDYINAMNAALEAPDYADPVTGYARYIDVDSWIDHHLLNVLTLNADALRLSTYFHKKRGGKIEYGPIWDFDRSMDSTDSRDDNPSSWSGGTNY---FTFPWWNRLFTDENFWQKYIDRYFELRTGPFATANVHAIIDQMAATLNEAQSRNFQRWSD 814          
BLAST of mRNA_H-canaliculatus_M_contigs78141.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Roseibacillus sp. TaxID=2024856 RepID=A0A2E3NAK1_9BACT)

HSP 1 Score: 135 bits (341), Expect = 6.580e-34
Identity = 68/163 (41.72%), Postives = 97/163 (59.51%), Query Frame = 1
Query:    1 STQQELIKDYVRDFEAAILSSNPMDEQTGYRIYIEESSWIDMHILDLFSMDADMLRLSNYFFKDKGLRLVNGPVWDSDRSLNSTDERDDDPDILVPDRRQIDPFDFSWWEKLFEIDHFDEKYRRRWHELRQGPLATNALLARVDDMANPLFEPYPREHDRWGE 489
            S+Q   I+DY+    AA+ + +  D  TGY  YI+  SWID H+L++ +++AD LRLS YF K +  ++  GP+WD DRS++STD RDD+P            F F WW +LF  ++F +KY  R+ ELR GP AT+ + A +D MA  L E   R   RW +
Sbjct:  655 SSQASWIRDYINAMNAALEAPDYADPVTGYARYIDVDSWIDHHLLNVLTLNADALRLSTYFHKKREGKIEYGPIWDFDRSMDSTDSRDDNPSSWSGGTNY---FTFPWWNRLFSDENFWQKYIDRYFELRDGPFATSNVHAIIDQMAATLNEAQTRNFQRWSD 814          
BLAST of mRNA_H-canaliculatus_M_contigs78141.1.1 vs.
Match: LTD (domain-containing protein (Fragment) n=1 Tax=Roseibacillus sp. TaxID=2024856 RepID=A0A2E8M3I7_9BACT)

HSP 1 Score: 135 bits (339), Expect = 1.130e-33
Identity = 68/163 (41.72%), Postives = 96/163 (58.90%), Query Frame = 1
Query:    1 STQQELIKDYVRDFEAAILSSNPMDEQTGYRIYIEESSWIDMHILDLFSMDADMLRLSNYFFKDKGLRLVNGPVWDSDRSLNSTDERDDDPDILVPDRRQIDPFDFSWWEKLFEIDHFDEKYRRRWHELRQGPLATNALLARVDDMANPLFEPYPREHDRWGE 489
            S+Q   I+DY+    AA+ + +  D  TGY  YI+  SWID H+L++ +++AD LRLS YF K +G ++  GP+WD DRS++STD RDD+P            F F WW +LF   +F ++Y  R+ ELR GP AT  + A +D MA  L E   R   RW +
Sbjct:  657 SSQASWIRDYINAMNAALEAPDYADPVTGYARYIDVDSWIDHHLLNVLTLNADALRLSTYFHKKRGGKIEYGPIWDFDRSMDSTDSRDDNPSSWSGGTNY---FTFPWWNRLFTDKNFWQRYIDRYFELRNGPFATANVHAIIDQMAATLNEAQARNFQRWSD 816          
BLAST of mRNA_H-canaliculatus_M_contigs78141.1.1 vs.
Match: LTD (domain-containing protein (Fragment) n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A355S8P4_9BACT)

HSP 1 Score: 135 bits (339), Expect = 1.160e-33
Identity = 68/163 (41.72%), Postives = 96/163 (58.90%), Query Frame = 1
Query:    1 STQQELIKDYVRDFEAAILSSNPMDEQTGYRIYIEESSWIDMHILDLFSMDADMLRLSNYFFKDKGLRLVNGPVWDSDRSLNSTDERDDDPDILVPDRRQIDPFDFSWWEKLFEIDHFDEKYRRRWHELRQGPLATNALLARVDDMANPLFEPYPREHDRWGE 489
            S+Q   I+DY+    AA+ + +  D  TGY  YI+  SWID H+L++ +++AD LRLS YF K +G ++  GP+WD DRS++STD RDD+P            F F WW +LF   +F ++Y  R+ ELR GP AT  + A +D MA  L E   R   RW +
Sbjct:  306 SSQASWIRDYINAMNAALEAPDYADPVTGYARYIDVDSWIDHHLLNVLTLNADALRLSTYFHKKRGGKIEYGPIWDFDRSMDSTDSRDDNPSSWSGGTNY---FTFPWWNRLFTDKNFWQRYIDRYFELRNGPFATANVHAIIDQMAATLNEAQARNFQRWSD 465          
BLAST of mRNA_H-canaliculatus_M_contigs78141.1.1 vs.
Match: LTD (domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V6PGK7_9BACT)

HSP 1 Score: 132 bits (333), Expect = 2.750e-33
Identity = 65/162 (40.12%), Postives = 98/162 (60.49%), Query Frame = 1
Query:    7 QQELIKDYVRDFEAAILSSNPMDEQTGYRIYIEESSWIDMHILDLFSMDADMLRLSNYFFKDKGLRLVNGPVWDSDRSLNSTDERDDDPDILVPDRRQI--DPFDFSWWEKLFEIDHFDEKYRRRWHELRQGPLATNALLARVDDMANPLFEPYPREHDRWG 486
            QQ+ ++DY+  F  A+ SS+P+   TGY  Y+   SWID HIL++ + + D LRLS YF+K++  +L  GP+WD DRSL+STD RD +P +     + +  D F+++WW  LF    F +K+  RW + R    +   + A +D MAN + +  PRE  RWG
Sbjct:   92 QQQYLQDYLDAFGNALFSSDPL---TGYPAYLNVDSWIDHHILNVLAFNVDALRLSAYFYKERNGKLSFGPIWDFDRSLDSTDGRDSNPRVWRAQSQDLGTDFFNYTWWGDLFNDIDFWQKWIDRWEDFRLSQFSLTNMNALIDSMANTVRQEQPREQSRWG 250          
BLAST of mRNA_H-canaliculatus_M_contigs78141.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V6FBV1_9BACT)

HSP 1 Score: 132 bits (333), Expect = 7.730e-33
Identity = 65/162 (40.12%), Postives = 98/162 (60.49%), Query Frame = 1
Query:    7 QQELIKDYVRDFEAAILSSNPMDEQTGYRIYIEESSWIDMHILDLFSMDADMLRLSNYFFKDKGLRLVNGPVWDSDRSLNSTDERDDDPDILVPDRRQI--DPFDFSWWEKLFEIDHFDEKYRRRWHELRQGPLATNALLARVDDMANPLFEPYPREHDRWG 486
            QQ+ ++DY+  F  A+ SS+P+   TGY  Y+   SWID HIL++ + + D LRLS YF+K++  +L  GP+WD DRSL+STD RD +P +     + +  D F+++WW  LF    F +K+  RW + R    +   + A +D MAN + +  PRE  RWG
Sbjct:  510 QQQYLQDYLDAFGNALFSSDPL---TGYPAYLNVDSWIDHHILNVLAFNVDALRLSAYFYKERNGKLSFGPIWDFDRSLDSTDGRDSNPRVWRAQSQDLGTDFFNYTWWGDLFNDIDFWQKWIDRWEDFRLSQFSLTNMNALIDSMANTVRQEQPREQSRWG 668          
BLAST of mRNA_H-canaliculatus_M_contigs78141.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A2E5XFU7_9BACT)

HSP 1 Score: 132 bits (332), Expect = 1.070e-32
Identity = 64/160 (40.00%), Postives = 94/160 (58.75%), Query Frame = 1
Query:    4 TQQELIKDYVRDFEAAILSSNPMDEQTGYRIYIEESSWIDMHILDLFSMDADMLRLSNYFFKDKGLRLVNGPVWDSDRSLNSTDERDDDPDILVPDRRQIDPFDFSWWEKLFEIDHFDEKYRRRWHELRQGPLATNALLARVDDMANPLFEPYPREHDRW 483
            +Q + I++Y+ +    +   N  D   GY  Y++  SWID H+L++ +++AD LRLS YFFK +G ++  GP+WD DRS+ STD RDD+P            F + WW +LF  ++F +KY  R+ ELR GP AT ++ A +D MA  L E   R   RW
Sbjct:  657 SQADWIRNYLNEMNTTLDGPNFTDPVNGYARYLDVDSWIDHHLLNVLTLNADALRLSTYFFKTRGGKIEYGPIWDFDRSMESTDSRDDNPSTWAGGTNY---FTYPWWNRLFADENFWQKYIDRYFELRDGPFATPSVHAIIDRMAATLDESQVRNFQRW 813          
BLAST of mRNA_H-canaliculatus_M_contigs78141.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5TVT9_9BACT)

HSP 1 Score: 132 bits (331), Expect = 1.380e-32
Identity = 63/162 (38.89%), Postives = 102/162 (62.96%), Query Frame = 1
Query:    7 QQELIKDYVRDFEAAILSSNPMDEQTGYRIYIEESSWIDMHILDLFSMDADMLRLSNYFFKDKGLRLVNGPVWDSDRSLNSTDERDDDPDILVPDRRQI--DPFDFSWWEKLFEIDHFDEKYRRRWHELRQGPLATNALLARVDDMANPLFEPYPREHDRWG 486
            QQ+ +++Y+ +F  A+L+S+P+   +GY  Y++  SWID HIL++ + + D LRLS YF+K++  +L  GP+WD DRSL+STD RD +P +     + +  D F++ WW +LF    F +K+  RW +LR    +   + A +D +AN + +  PRE  RWG
Sbjct:   38 QQQYLQNYMDEFGNALLNSDPL---SGYPAYVDVDSWIDHHILNVMAFNVDALRLSAYFYKERNGKLFFGPIWDFDRSLDSTDGRDANPRVWRSQTQDLGTDFFNYPWWGELFNDIDFWQKWIDRWEDLRLSQFSLTNMNALIDSLANTVRQEQPREKSRWG 196          
BLAST of mRNA_H-canaliculatus_M_contigs78141.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Roseibacillus sp. TaxID=2024856 RepID=A0A2E6SAL7_9BACT)

HSP 1 Score: 129 bits (323), Expect = 1.730e-31
Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = 1
Query:    1 STQQELIKDYVRDFEAAILSSNPMDEQTGYRIYIEESSWIDMHILDLFSMDADMLRLSNYFFKDKGLRLVNGPVWDSDRSLNSTDERDDDPDILVPDRRQIDPFDFSWWEKLFEIDHFDEKYRRRWHELRQGPLATNALLARVDDMANPLFEPYPREHDRW 483
            S Q   I+DY+ +   A+ + +  D   GY  YI+  SWID H+L++ +++AD LRLS YFFK +  ++  GP+WD DRS+ STD RDD+P            F + WW +LF  ++F +KY  R+ ELR GP +T  + A +D MA  L E   R   RW
Sbjct:  656 SAQANWIRDYLDNMNDALNAPDFADPVNGYARYIDVDSWIDHHLLNVLTLNADALRLSTYFFKRRAGKIEYGPIWDFDRSMESTDSRDDNPSTWAGGTNY---FTYPWWNRLFADENFWQKYIDRYFELRSGPFSTPNVHAIIDRMAATLDESQVRNFQRW 813          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs78141.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.940e-3541.36protein n=1 Tax=Planctomycetes bacterium TaxID=202... [more]
LTD2.600e-3442.33domain-containing protein n=5 Tax=cellular organis... [more]
Uncharacterized6.580e-3441.72protein n=2 Tax=Roseibacillus sp. TaxID=2024856 Re... [more]
LTD1.130e-3341.72domain-containing protein (Fragment) n=1 Tax=Rosei... [more]
LTD1.160e-3341.72domain-containing protein (Fragment) n=1 Tax=Verru... [more]
LTD2.750e-3340.12domain-containing protein n=1 Tax=Verrucomicrobia ... [more]
Uncharacterized7.730e-3340.12protein n=1 Tax=Verrucomicrobia bacterium TaxID=20... [more]
Uncharacterized1.070e-3240.00protein n=1 Tax=Verrucomicrobiaceae bacterium TaxI... [more]
Uncharacterized1.380e-3238.89protein n=1 Tax=Verrucomicrobia bacterium TaxID=20... [more]
Uncharacterized1.730e-3140.37protein n=1 Tax=Roseibacillus sp. TaxID=2024856 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs78141contigH-canaliculatus_M_contigs78141:11..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1396141.BATP01000003_gene4934
PFAMsCHB_HEX_C_1,CotH,Erythro_esteras,LTD
Model size489
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.95e-27
EggNOG OGsCOG2312@1|root,COG2312@2|Bacteria
Descriptionresponse to antibiotic
Cds size489
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854117.7567248-CDS-H-canaliculatus_M_contigs78141:10..4991696854117.7567248-CDS-H-canaliculatus_M_contigs78141:10..499Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs78141 11..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs78141.1.1prot_H-canaliculatus_M_contigs78141.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs78141 11..499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs78141.1.1

>prot_H-canaliculatus_M_contigs78141.1.1 ID=prot_H-canaliculatus_M_contigs78141.1.1|Name=mRNA_H-canaliculatus_M_contigs78141.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=163bp
STQQELIKDYVRDFEAAILSSNPMDEQTGYRIYIEESSWIDMHILDLFSM
DADMLRLSNYFFKDKGLRLVNGPVWDSDRSLNSTDERDDDPDILVPDRRQ
IDPFDFSWWEKLFEIDHFDEKYRRRWHELRQGPLATNALLARVDDMANPL
FEPYPREHDRWGE
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mRNA from alignment at H-canaliculatus_M_contigs78141:11..499-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs78141.1.1 ID=mRNA_H-canaliculatus_M_contigs78141.1.1|Name=mRNA_H-canaliculatus_M_contigs78141.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=489bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78141:11..499- (Hapterophycus canaliculatus Oshoro7m male)
AGCACGCAGCAAGAGTTGATAAAAGACTACGTCCGAGATTTTGAAGCGGC TATCCTGAGCAGCAACCCAATGGATGAGCAGACGGGCTACCGGATATATA TTGAAGAGAGCTCGTGGATCGACATGCATATTCTCGACTTGTTCAGCATG GATGCAGACATGTTACGACTGAGTAACTACTTCTTCAAAGACAAGGGACT GCGACTTGTTAACGGGCCGGTTTGGGATTCTGACAGATCCCTCAATTCGA CTGATGAACGCGATGACGATCCGGATATTCTGGTACCGGACAGACGCCAG ATAGATCCGTTTGATTTCAGTTGGTGGGAAAAGCTGTTTGAGATTGACCA TTTTGACGAAAAATACCGTCGTCGCTGGCATGAACTAAGACAAGGCCCAT TGGCCACCAACGCTCTGCTTGCCCGTGTTGATGACATGGCAAATCCATTG TTTGAGCCCTACCCGCGAGAACATGATCGTTGGGGAGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78141:11..499-

>mRNA_H-canaliculatus_M_contigs78141.1.1 ID=mRNA_H-canaliculatus_M_contigs78141.1.1|Name=mRNA_H-canaliculatus_M_contigs78141.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=489bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78141:11..499- (Hapterophycus canaliculatus Oshoro7m male)
AGCACGCAGCAAGAGTTGATAAAAGACTACGTCCGAGATTTTGAAGCGGC
TATCCTGAGCAGCAACCCAATGGATGAGCAGACGGGCTACCGGATATATA
TTGAAGAGAGCTCGTGGATCGACATGCATATTCTCGACTTGTTCAGCATG
GATGCAGACATGTTACGACTGAGTAACTACTTCTTCAAAGACAAGGGACT
GCGACTTGTTAACGGGCCGGTTTGGGATTCTGACAGATCCCTCAATTCGA
CTGATGAACGCGATGACGATCCGGATATTCTGGTACCGGACAGACGCCAG
ATAGATCCGTTTGATTTCAGTTGGTGGGAAAAGCTGTTTGAGATTGACCA
TTTTGACGAAAAATACCGTCGTCGCTGGCATGAACTAAGACAAGGCCCAT
TGGCCACCAACGCTCTGCTTGCCCGTGTTGATGACATGGCAAATCCATTG
TTTGAGCCCTACCCGCGAGAACATGATCGTTGGGGAGAG
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