mRNA_H-canaliculatus_M_contigs78133.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs78133.1.1
Unique NamemRNA_H-canaliculatus_M_contigs78133.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs78133.1.1 vs.
Match: Dehydrogenase ((Fragment) n=1 Tax=Sulfitobacter sp. TaxID=1903071 RepID=A0A3D2F9C2_9RHOB)

HSP 1 Score: 315 bits (806), Expect = 5.420e-101
Identity = 141/167 (84.43%), Postives = 148/167 (88.62%), Query Frame = 1
Query:    1 DMFPWDLARFGDWATNGQTGKTFTKERVRDQYANRFKIHFPNEERAAGRPVRMRPAYDLQKSMGAAMGLNYGWEHPLWFADTPGATDTDGFTRQNWWGPVGEECKMLRDRAGIIDISNFAKYTCKGAGAEDWLNAVFANTMPKTVGRSCLTPLIGKRGGIAGDFTVT 501
            DMFPWD+ARFG WAT+G  GK FTKERVRDQYANRFKIHFPNEER+AGR VR RP Y  QK MGA MGLN+GWEHPLWFADTP   DTDGFTRQNWWGPVGEECKMLR  AGIIDISNFAKY CKGAGA DWLN+VFAN MPK++GRSCLTPLIGKRGGIAGDFTVT
Sbjct:  373 DMFPWDMARFGSWATDGAKGKAFTKERVRDQYANRFKIHFPNEERSAGRAVRTRPVYQRQKDMGAVMGLNFGWEHPLWFADTPDTKDTDGFTRQNWWGPVGEECKMLRANAGIIDISNFAKYRCKGAGASDWLNSVFANNMPKSIGRSCLTPLIGKRGGIAGDFTVT 539          
BLAST of mRNA_H-canaliculatus_M_contigs78133.1.1 vs.
Match: 4-methylaminobutanoate (oxidase (Formaldehyde-forming) n=1 Tax=Ascidiaceihabitans donghaensis TaxID=1510460 RepID=A0A2R8BE83_9RHOB)

HSP 1 Score: 313 bits (803), Expect = 8.300e-100
Identity = 142/167 (85.03%), Postives = 147/167 (88.02%), Query Frame = 1
Query:    1 DMFPWDLARFGDWATNGQTGKTFTKERVRDQYANRFKIHFPNEERAAGRPVRMRPAYDLQKSMGAAMGLNYGWEHPLWFADTPGATDTDGFTRQNWWGPVGEECKMLRDRAGIIDISNFAKYTCKGAGAEDWLNAVFANTMPKTVGRSCLTPLIGKRGGIAGDFTVT 501
            DMFPWD+ARFG WAT G  GKTFTKERVRDQYANRFKIHFPNEER AGR VR RP +DLQ  MGA MGLNYGWEHPLW+ADTPGA+DTDGFTRQNWW PVG ECKMLRDRAGIIDISNFAKY CKG  AE WLNAVFAN MPK +GRSCLTPLIG RGGIAGDFTVT
Sbjct:  373 DMFPWDMARFGAWATQGAAGKTFTKERVRDQYANRFKIHFPNEERGAGRAVRTRPVHDLQLEMGAVMGLNYGWEHPLWYADTPGASDTDGFTRQNWWDPVGAECKMLRDRAGIIDISNFAKYRCKGPDAETWLNAVFANVMPKAIGRSCLTPLIGVRGGIAGDFTVT 539          
BLAST of mRNA_H-canaliculatus_M_contigs78133.1.1 vs.
Match: Glycine (cleavage T-protein (Aminomethyl transferase) n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=B7RFV5_ROSS0)

HSP 1 Score: 301 bits (772), Expect = 2.850e-95
Identity = 137/167 (82.04%), Postives = 144/167 (86.23%), Query Frame = 1
Query:    1 DMFPWDLARFGDWATNGQTGKTFTKERVRDQYANRFKIHFPNEERAAGRPVRMRPAYDLQKSMGAAMGLNYGWEHPLWFADTPGATDTDGFTRQNWWGPVGEECKMLRDRAGIIDISNFAKYTCKGAGAEDWLNAVFANTMPKTVGRSCLTPLIGKRGGIAGDFTVT 501
            DMF WD+ARFGDWA        FTK RVRDQYANRFKIHFPNEERAAGRPVR RP Y+ QK MGA  GLNYGWEHPLWFADTPG  DTDGFTRQNWWGPVGEEC+MLR++AGIIDISNFAKY C G GAEDWLN++FANTMPK VGRSCLTPLIG RGGIAGDFTVT
Sbjct:  373 DMFAWDMARFGDWAD-----AAFTKARVRDQYANRFKIHFPNEERAAGRPVRTRPVYETQKQMGAVFGLNYGWEHPLWFADTPGTADTDGFTRQNWWGPVGEECRMLREKAGIIDISNFAKYRCAGPGAEDWLNSLFANTMPKAVGRSCLTPLIGVRGGIAGDFTVT 534          
BLAST of mRNA_H-canaliculatus_M_contigs78133.1.1 vs.
Match: FAD-dependent (oxidoreductase n=3 Tax=Ruegeria TaxID=97050 RepID=UPI001489C100)

HSP 1 Score: 297 bits (761), Expect = 1.190e-93
Identity = 137/167 (82.04%), Postives = 144/167 (86.23%), Query Frame = 1
Query:    1 DMFPWDLARFGDWATNGQTGKTFTKERVRDQYANRFKIHFPNEERAAGRPVRMRPAYDLQKSMGAAMGLNYGWEHPLWFADTPGATDTDGFTRQNWWGPVGEECKMLRDRAGIIDISNFAKYTCKGAGAEDWLNAVFANTMPKTVGRSCLTPLIGKRGGIAGDFTVT 501
            DMF WDLARF  WAT     K FTK RV+DQYA+RF IHFPNEER+AGRP R RP Y+ QK+MGA  GLN GWEHPLWFADTPGA +T+GFTRQNWWGPVGEECKMLRDRAGIIDISNFAKY CKG GA DWLNAVFANTMPKTVGRSCLTPLI KRGGIAGDFTVT
Sbjct:  373 DMFAWDLARFDSWAT-----KDFTKARVQDQYAHRFAIHFPNEERSAGRPARTRPVYETQKAMGAVFGLNAGWEHPLWFADTPGAVETNGFTRQNWWGPVGEECKMLRDRAGIIDISNFAKYVCKGPGASDWLNAVFANTMPKTVGRSCLTPLISKRGGIAGDFTVT 534          
BLAST of mRNA_H-canaliculatus_M_contigs78133.1.1 vs.
Match: Dehydrogenase ((Fragment) n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A2A4NSQ6_9RHOB)

HSP 1 Score: 291 bits (744), Expect = 2.800e-93
Identity = 131/167 (78.44%), Postives = 143/167 (85.63%), Query Frame = 1
Query:    1 DMFPWDLARFGDWATNGQTGKTFTKERVRDQYANRFKIHFPNEERAAGRPVRMRPAYDLQKSMGAAMGLNYGWEHPLWFADTPGATDTDGFTRQNWWGPVGEECKMLRDRAGIIDISNFAKYTCKGAGAEDWLNAVFANTMPKTVGRSCLTPLIGKRGGIAGDFTVT 501
            DMF WD+ARFGDWA      K FTK RVRD YA+RF IHFPNEERAAGRPVR RP +D+QK MGA MGL+YGWEHPLWFAD+PG  DT+GFTRQNWWGPVG+EC+MLRD AGIIDISNFAKY CKG GA  WL+A+FAN MP+ VGRSCLTPLIGKRGGIAGDFTVT
Sbjct:  153 DMFAWDMARFGDWAD-----KAFTKARVRDSYAHRFSIHFPNEERAAGRPVRTRPVHDIQKDMGAVMGLSYGWEHPLWFADSPGVVDTNGFTRQNWWGPVGDECRMLRDHAGIIDISNFAKYRCKGPGAGAWLDAIFANNMPREVGRSCLTPLIGKRGGIAGDFTVT 314          
BLAST of mRNA_H-canaliculatus_M_contigs78133.1.1 vs.
Match: Dimethylglycine (dehydrogenase n=2 Tax=Shimia TaxID=573139 RepID=A0A1M6HHS0_9RHOB)

HSP 1 Score: 296 bits (758), Expect = 3.370e-93
Identity = 135/167 (80.84%), Postives = 144/167 (86.23%), Query Frame = 1
Query:    1 DMFPWDLARFGDWATNGQTGKTFTKERVRDQYANRFKIHFPNEERAAGRPVRMRPAYDLQKSMGAAMGLNYGWEHPLWFADTPGATDTDGFTRQNWWGPVGEECKMLRDRAGIIDISNFAKYTCKGAGAEDWLNAVFANTMPKTVGRSCLTPLIGKRGGIAGDFTVT 501
            DMFPWD+ARFG WA N +    F K RVRD Y++RF IHFPNEERAAGRP+R RP Y+ QK+MGA  GLNYGWEHPLWFAD PG  DT+GFTRQNWWGPVGEECKMLR+RAGIIDISNFAKY CKG GAE WLNAVFANTMPK VGRSCLTPLIGKRGGIAGDFTVT
Sbjct:  373 DMFPWDVARFGAWANNPE----FVKARVRDVYSHRFAIHFPNEERAAGRPLRTRPIYETQKAMGAVFGLNYGWEHPLWFADKPGVVDTNGFTRQNWWGPVGEECKMLRERAGIIDISNFAKYICKGPGAEGWLNAVFANTMPKAVGRSCLTPLIGKRGGIAGDFTVT 535          
BLAST of mRNA_H-canaliculatus_M_contigs78133.1.1 vs.
Match: GcvT (family protein n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A8J7IHF7_9RHOB)

HSP 1 Score: 294 bits (753), Expect = 1.800e-92
Identity = 136/167 (81.44%), Postives = 143/167 (85.63%), Query Frame = 1
Query:    1 DMFPWDLARFGDWATNGQTGKTFTKERVRDQYANRFKIHFPNEERAAGRPVRMRPAYDLQKSMGAAMGLNYGWEHPLWFADTPGATDTDGFTRQNWWGPVGEECKMLRDRAGIIDISNFAKYTCKGAGAEDWLNAVFANTMPKTVGRSCLTPLIGKRGGIAGDFTVT 501
            DMF WD+ARFGDWA      K FTK RV DQYA+RF IHFPNEERAAGRPVR RP +D+QK MGA MGLNYGWEHPLWFADTP A DT+GFTRQNWW PVG EC+MLRDRAGIIDISNFAKYTCKG GAEDWLNAVFAN +P  VGRSCLTPLIG RGGIAGDFTVT
Sbjct:  373 DMFAWDIARFGDWAD-----KAFTKARVGDQYAHRFAIHFPNEERAAGRPVRTRPVHDMQKRMGAVMGLNYGWEHPLWFADTPDAQDTNGFTRQNWWAPVGAECRMLRDRAGIIDISNFAKYTCKGPGAEDWLNAVFANRIPTQVGRSCLTPLIGVRGGIAGDFTVT 534          
BLAST of mRNA_H-canaliculatus_M_contigs78133.1.1 vs.
Match: FAD-dependent (oxidoreductase n=1 Tax=Tateyamaria pelophila TaxID=328415 RepID=UPI001CBEF0F3)

HSP 1 Score: 294 bits (752), Expect = 2.530e-92
Identity = 136/167 (81.44%), Postives = 141/167 (84.43%), Query Frame = 1
Query:    1 DMFPWDLARFGDWATNGQTGKTFTKERVRDQYANRFKIHFPNEERAAGRPVRMRPAYDLQKSMGAAMGLNYGWEHPLWFADTPGATDTDGFTRQNWWGPVGEECKMLRDRAGIIDISNFAKYTCKGAGAEDWLNAVFANTMPKTVGRSCLTPLIGKRGGIAGDFTVT 501
            DMF WD+ARFG WA+     K FTK RV DQYANRFKIHFPNEER+AGRPVR RP Y  Q+ MGA MGLNYGWEHPLWFAD PGA DTDGFTRQNWWGPVG ECKMLR R GIIDISNFAKY C G GAEDWLNAVFAN MP+ VGRSCLTPLIGKRGGIAGDFTVT
Sbjct:  373 DMFAWDMARFGTWAS-----KAFTKARVGDQYANRFKIHFPNEERSAGRPVRTRPIYARQREMGAVMGLNYGWEHPLWFADAPGAEDTDGFTRQNWWGPVGGECKMLRARGGIIDISNFAKYVCTGPGAEDWLNAVFANRMPRLVGRSCLTPLIGKRGGIAGDFTVT 534          
BLAST of mRNA_H-canaliculatus_M_contigs78133.1.1 vs.
Match: Dimethylglycine (dehydrogenase n=1 Tax=Phaeobacter gallaeciensis DSM 26640 TaxID=1423144 RepID=V9WNZ0_9RHOB)

HSP 1 Score: 289 bits (739), Expect = 4.550e-92
Identity = 134/167 (80.24%), Postives = 140/167 (83.83%), Query Frame = 1
Query:    1 DMFPWDLARFGDWATNGQTGKTFTKERVRDQYANRFKIHFPNEERAAGRPVRMRPAYDLQKSMGAAMGLNYGWEHPLWFADTPGATDTDGFTRQNWWGPVGEECKMLRDRAGIIDISNFAKYTCKGAGAEDWLNAVFANTMPKTVGRSCLTPLIGKRGGIAGDFTVT 501
            DMF WD+ARFG WAT     K FTK RV+DQYA+RF IHFPNEER+AGRP R RP Y LQ  MGA  GLN GWEHPLWFADTPGA DT+GFTRQNWWGPVGEEC+MLR RAGIIDISNFAKY C G GAE WLNAVFANTMPK VGRSCLTPLI KRGGIAGDFTVT
Sbjct:  373 DMFAWDIARFGSWAT-----KEFTKARVKDQYAHRFAIHFPNEERSAGRPARTRPIYALQAEMGAVFGLNAGWEHPLWFADTPGAKDTNGFTRQNWWGPVGEECRMLRSRAGIIDISNFAKYRCAGPGAEAWLNAVFANTMPKAVGRSCLTPLISKRGGIAGDFTVT 534          
BLAST of mRNA_H-canaliculatus_M_contigs78133.1.1 vs.
Match: FAD-dependent (oxidoreductase n=1 Tax=Seohaeicola saemankumensis TaxID=481181 RepID=UPI001CD2D252)

HSP 1 Score: 292 bits (747), Expect = 1.380e-91
Identity = 133/167 (79.64%), Postives = 143/167 (85.63%), Query Frame = 1
Query:    1 DMFPWDLARFGDWATNGQTGKTFTKERVRDQYANRFKIHFPNEERAAGRPVRMRPAYDLQKSMGAAMGLNYGWEHPLWFADTPGATDTDGFTRQNWWGPVGEECKMLRDRAGIIDISNFAKYTCKGAGAEDWLNAVFANTMPKTVGRSCLTPLIGKRGGIAGDFTVT 501
            DMF WD+ARFGDWA      K FT+ RVRDQYA+RF IHFPNEERAAGRPVR+RPAY+ Q+ MGA  GLNYGWEHPLWFAD PG  +T+GFTRQNWWGPVG EC+MLRDRAGIIDISNFAKY   G GAEDWLNAVFAN MP+ VGRSCLTPLIGKRGGIAGDFTVT
Sbjct:  373 DMFAWDMARFGDWAD-----KAFTRARVRDQYAHRFAIHFPNEERAAGRPVRLRPAYETQREMGAVFGLNYGWEHPLWFADAPGVEETNGFTRQNWWGPVGAECRMLRDRAGIIDISNFAKYRVAGPGAEDWLNAVFANHMPRAVGRSCLTPLIGKRGGIAGDFTVT 534          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs78133.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Dehydrogenase5.420e-10184.43(Fragment) n=1 Tax=Sulfitobacter sp. TaxID=1903071... [more]
4-methylaminobutanoate8.300e-10085.03oxidase (Formaldehyde-forming) n=1 Tax=Ascidiaceih... [more]
Glycine2.850e-9582.04cleavage T-protein (Aminomethyl transferase) n=3 T... [more]
FAD-dependent1.190e-9382.04oxidoreductase n=3 Tax=Ruegeria TaxID=97050 RepID=... [more]
Dehydrogenase2.800e-9378.44(Fragment) n=1 Tax=Rhodobacteraceae bacterium TaxI... [more]
Dimethylglycine3.370e-9380.84dehydrogenase n=2 Tax=Shimia TaxID=573139 RepID=A0... [more]
GcvT1.800e-9281.44family protein n=2 Tax=Rhodobacterales TaxID=20445... [more]
FAD-dependent2.530e-9281.44oxidoreductase n=1 Tax=Tateyamaria pelophila TaxID... [more]
Dimethylglycine4.550e-9280.24dehydrogenase n=1 Tax=Phaeobacter gallaeciensis DS... [more]
FAD-dependent1.380e-9179.64oxidoreductase n=1 Tax=Seohaeicola saemankumensis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs78133contigH-canaliculatus_M_contigs78133:2..502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog391589.RGAI101_1338
Preferred namedmgdh1
PFAMsDAO,FAO_M,GCV_T,GCV_T_C
Model size501
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00181
KEGG koko:K00315
KEGG ReactionR01565
KEGG Pathwayko00260,ko01100,map00260,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.44e-95
EggNOG OGsCOG0404@1|root,COG0665@1|root,COG0404@2|Bacteria,COG0665@2|Bacteria,1MUXJ@1224|Proteobacteria,2TRGS@28211|Alphaproteobacteria,2P1PQ@2433|Roseobacter
EC1.5.8.4
DescriptionCOG0665 Glycine D-amino acid oxidases (deaminating)
Cds size498
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854117.575046-UTR-H-canaliculatus_M_contigs78133:1..41696854117.575046-UTR-H-canaliculatus_M_contigs78133:1..4Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs78133 2..4 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854117.5894482-CDS-H-canaliculatus_M_contigs78133:4..5021696854117.5894482-CDS-H-canaliculatus_M_contigs78133:4..502Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs78133 5..502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs78133.1.1prot_H-canaliculatus_M_contigs78133.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs78133 5..502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs78133.1.1

>prot_H-canaliculatus_M_contigs78133.1.1 ID=prot_H-canaliculatus_M_contigs78133.1.1|Name=mRNA_H-canaliculatus_M_contigs78133.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=166bp
MFPWDLARFGDWATNGQTGKTFTKERVRDQYANRFKIHFPNEERAAGRPV
RMRPAYDLQKSMGAAMGLNYGWEHPLWFADTPGATDTDGFTRQNWWGPVG
EECKMLRDRAGIIDISNFAKYTCKGAGAEDWLNAVFANTMPKTVGRSCLT
PLIGKRGGIAGDFTVT
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mRNA from alignment at H-canaliculatus_M_contigs78133:2..502+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs78133.1.1 ID=mRNA_H-canaliculatus_M_contigs78133.1.1|Name=mRNA_H-canaliculatus_M_contigs78133.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=501bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78133:2..502+ (Hapterophycus canaliculatus Oshoro7m male)
GACATGTTCCCGTGGGATCTGGCACGCTTTGGCGACTGGGCCACAAACGG GCAAACCGGCAAGACCTTTACCAAAGAACGGGTGCGCGACCAATACGCCA ACCGCTTTAAAATCCACTTTCCGAATGAGGAACGCGCGGCCGGTCGTCCG GTGCGCATGCGTCCCGCCTACGATTTGCAGAAATCCATGGGCGCGGCCAT GGGCCTGAACTACGGCTGGGAACATCCGCTGTGGTTCGCAGATACCCCGG GTGCGACGGATACCGACGGATTTACGCGCCAGAATTGGTGGGGGCCGGTG GGCGAAGAATGCAAGATGCTGCGCGATCGCGCCGGCATTATCGACATCTC GAATTTCGCCAAATACACCTGCAAAGGGGCAGGGGCCGAGGACTGGCTGA ACGCGGTTTTTGCCAACACTATGCCAAAGACAGTCGGGCGGTCGTGCCTC ACGCCGTTGATCGGCAAACGCGGTGGGATTGCGGGTGACTTCACGGTCAC G
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78133:2..502+

>mRNA_H-canaliculatus_M_contigs78133.1.1 ID=mRNA_H-canaliculatus_M_contigs78133.1.1|Name=mRNA_H-canaliculatus_M_contigs78133.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=498bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78133:2..502+ (Hapterophycus canaliculatus Oshoro7m male)
ATGTTCCCGTGGGATCTGGCACGCTTTGGCGACTGGGCCACAAACGGGCA
AACCGGCAAGACCTTTACCAAAGAACGGGTGCGCGACCAATACGCCAACC
GCTTTAAAATCCACTTTCCGAATGAGGAACGCGCGGCCGGTCGTCCGGTG
CGCATGCGTCCCGCCTACGATTTGCAGAAATCCATGGGCGCGGCCATGGG
CCTGAACTACGGCTGGGAACATCCGCTGTGGTTCGCAGATACCCCGGGTG
CGACGGATACCGACGGATTTACGCGCCAGAATTGGTGGGGGCCGGTGGGC
GAAGAATGCAAGATGCTGCGCGATCGCGCCGGCATTATCGACATCTCGAA
TTTCGCCAAATACACCTGCAAAGGGGCAGGGGCCGAGGACTGGCTGAACG
CGGTTTTTGCCAACACTATGCCAAAGACAGTCGGGCGGTCGTGCCTCACG
CCGTTGATCGGCAAACGCGGTGGGATTGCGGGTGACTTCACGGTCACG
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