mRNA_H-canaliculatus_M_contigs77798.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77798.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77798.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs77798.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ8_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 3.350e-33
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 1
Query:   34 RSLAAYDFSSANVTLIPSVPGRHSGKNLYKYGHMRVRAVLAREEVHVRPGSHKVAFQVASIMNLSRRP 237
            RSL+AYDFSSANVTLIPSVPGRH G++LY+YGHMRVRAVLAREEVHVRPGSH+VAFQ ASIMNLSRRP
Sbjct:  443 RSLSAYDFSSANVTLIPSVPGRHKGRDLYRYGHMRVRAVLAREEVHVRPGSHRVAFQAASIMNLSRRP 510          
BLAST of mRNA_H-canaliculatus_M_contigs77798.1.1 vs.
Match: Tyrosyl-DNA (phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE95_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 8.530e-13
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   31 ARSLAAYDFSSANVTLIPSVPGR-----------HSGKNLYKYGHMRVRAVLAREE-----VHVRPGSHKVAFQVASIMNLSRRP 237
            A +L  YDF  A V L+PSVPG            H G++L+KYGHMRVRA+LARE+       ++ G HKV  Q++S+ +L++ P
Sbjct:  243 ASTLGEYDFRGARVALVPSVPGTGGNTPGTGGKPHKGRDLHKYGHMRVRALLAREKEDGTGAKLKEGGHKVLCQISSLASLTKTP 327          
BLAST of mRNA_H-canaliculatus_M_contigs77798.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBB1_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.030e-11
Identity = 37/68 (54.41%), Postives = 40/68 (58.82%), Query Frame = 1
Query:   34 RSLAAYDFSSANVTLIPSVPGRHSGKNLYKYGHMRVRAVLAREEVHVRPGSHKVAFQVASIMNLSRRP 237
            RSL AYDFSSAN TLIPSVPGRH GK+LY+                       VAFQ AS+MNLS RP
Sbjct:  169 RSLFAYDFSSANATLIPSVPGRHKGKDLYR-----------------------VAFQAASVMNLSLRP 213          
BLAST of mRNA_H-canaliculatus_M_contigs77798.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIS9_PYTOL)

HSP 1 Score: 67.0 bits (162), Expect = 3.560e-11
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 1
Query:   34 RSLAAYDFSSANVTLIPSVPGRHSGKNLYKYGHMRVRAVLAREEVHVRPGSHKVAFQVASIMNLSRR 234
            + L+ +DFS+A V LIPSVPG H+GK ++KYGH+RVRA+L  +   V P  H +  Q +S+ +L  +
Sbjct:  227 KELSRFDFSTATVALIPSVPGAHTGKAMHKYGHLRVRALL--KHFAVAPSDHPLICQFSSLGSLDEK 291          
BLAST of mRNA_H-canaliculatus_M_contigs77798.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2QB12_9DINO)

HSP 1 Score: 58.5 bits (140), Expect = 2.120e-9
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   28 DARSLAAYDFSSANVTLIPSVPGRHSGKNLYKYGHMRVRAVLAREEVH 171
            DA  L  YDFS+A+V L+ SVPG HSG   +++GHMR+R +LAR   H
Sbjct:   40 DASRLDGYDFSTASVGLVASVPGYHSGPEAFEWGHMRLRQLLARHAKH 87          
BLAST of mRNA_H-canaliculatus_M_contigs77798.1.1 vs.
Match: Tyrosyl-DNA (phosphodiesterase 1 n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4E9V0_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 5.280e-9
Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = 1
Query:   34 RSLAAYDFSSANVTLIPSVPGRHSGKNLYKYGHMRVRAVLAREEVHVRPGSHKVAFQVASIMNLSRR 234
            R L  +DFSSA V L+PSVPG H GK++ KYGH+RVR +L   +V   P  + +  Q +S+ +L  +
Sbjct:  230 RELKRFDFSSARVALVPSVPGYHKGKDMEKYGHLRVRKLLKMYQVP--PTDNPLICQFSSMGSLDEK 294          
BLAST of mRNA_H-canaliculatus_M_contigs77798.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P8W0_9CHLO)

HSP 1 Score: 60.8 bits (146), Expect = 5.390e-9
Identity = 24/42 (57.14%), Postives = 36/42 (85.71%), Query Frame = 1
Query:   37 SLAAYDFSSANVTLIPSVPGRHSGKNLYKYGHMRVRAVLARE 162
            ++A +DFSSA + L PSVPGRH+G  L++YGH+RVR++L++E
Sbjct:  374 AIARHDFSSARIALAPSVPGRHTGPALFRYGHLRVRSLLSQE 415          
BLAST of mRNA_H-canaliculatus_M_contigs77798.1.1 vs.
Match: Phospholipase (D/nuclease n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z208_9FUNG)

HSP 1 Score: 60.1 bits (144), Expect = 8.540e-9
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 1
Query:   16 NKTPDARSLAAYDFSSANVTLIPSVPGRHSGKNLYKYGHMRVRAVLAREEVHVRPGSHKVAFQVASIMNLSRRP 237
            N T D   L+ YDFS    T+I SVPGRH+G  L+K+GHMRVR +L+   +  +  S  +  Q +SI +L + P
Sbjct:  118 NSTRD--KLSKYDFSPCKGTIIGSVPGRHAGTELHKWGHMRVREILSTMALGKQFQSSSLILQFSSIGSLGKTP 189          
BLAST of mRNA_H-canaliculatus_M_contigs77798.1.1 vs.
Match: Carbonic (anhydrase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVY7_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.380e-8
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 1
Query:   34 RSLAAYDFSSANVTLIPSVPGRHSGKNLYKYGHMRVRAVLAREEVHVRPGSHKVAFQVASIMNLSRR 234
            R +A +DFS ANV LIPSVPG H G ++ K+GH+RVR +L  + + V P  + +  Q +S+ +L  +
Sbjct:  481 RHVARFDFSGANVALIPSVPGVHKGSDMEKFGHLRVRKLL--QLLKVPPSDNPLICQFSSMGSLDEK 545          
BLAST of mRNA_H-canaliculatus_M_contigs77798.1.1 vs.
Match: PLD (phosphodiesterase domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZA01_CHLVA)

HSP 1 Score: 58.2 bits (139), Expect = 4.520e-8
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   40 LAAYDFSSANVTLIPSVPGRHSGKNLYKYGHMRVRAVLAREEVHVRPGSHKVAFQVASIMNLSRR 234
            + + DFS+A   L+ SVPGRH G +L+K+GHMR+RAVL +E    R     +A Q++S+  L+ R
Sbjct:  262 IRSCDFSAARGHLVASVPGRHKGADLHKWGHMRMRAVLCQEAFPARFRGAPLAAQMSSLGLLNER 326          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77798.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.350e-3389.71protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Tyrosyl-DNA8.530e-1343.53phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
Uncharacterized2.030e-1154.41protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.560e-1146.27protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Hypothetical2.120e-954.17protein (Fragment) n=1 Tax=Brandtodinium nutricula... [more]
Tyrosyl-DNA5.280e-944.78phosphodiesterase 1 n=4 Tax=Phytophthora TaxID=478... [more]
Uncharacterized5.390e-957.14protein n=1 Tax=Raphidocelis subcapitata TaxID=307... [more]
Phospholipase8.540e-943.24D/nuclease n=1 Tax=Basidiobolus meristosporus CBS ... [more]
Carbonic1.380e-843.28anhydrase n=1 Tax=Pythium brassicum TaxID=1485010 ... [more]
PLD4.520e-844.62phosphodiesterase domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77798contigH-canaliculatus_M_contigs77798:204..440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FIJ8
Preferred nameTDBP1
PFAMsTyr-DNA_phospho
Model size237
Max annot lvl2759|Eukaryota
KEGG koko:K10862
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.5e-34
EggNOG OGsKOG2031@1|root,KOG2031@2759|Eukaryota
Description3'-tyrosyl-DNA phosphodiesterase activity
Cds size237
COG categoryV
BRITEko00000,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854114.7544107-CDS-H-canaliculatus_M_contigs77798:203..4401696854114.7544107-CDS-H-canaliculatus_M_contigs77798:203..440Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77798 204..440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77798.1.1prot_H-canaliculatus_M_contigs77798.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77798 204..440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77798.1.1

>prot_H-canaliculatus_M_contigs77798.1.1 ID=prot_H-canaliculatus_M_contigs77798.1.1|Name=mRNA_H-canaliculatus_M_contigs77798.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=79bp
DLPKRNKTPDARSLAAYDFSSANVTLIPSVPGRHSGKNLYKYGHMRVRAV
LAREEVHVRPGSHKVAFQVASIMNLSRRP
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mRNA from alignment at H-canaliculatus_M_contigs77798:204..440-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77798.1.1 ID=mRNA_H-canaliculatus_M_contigs77798.1.1|Name=mRNA_H-canaliculatus_M_contigs77798.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=237bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77798:204..440- (Hapterophycus canaliculatus Oshoro7m male)
GACCTCCCGAAACGCAACAAAACGCCCGACGCTAGGAGTCTCGCCGCGTA CGACTTCTCCTCCGCGAACGTGACCCTCATCCCGAGCGTGCCGGGCCGCC ACTCCGGGAAGAACCTGTACAAGTACGGGCACATGCGCGTACGAGCCGTC CTGGCGAGGGAGGAGGTGCACGTCAGACCCGGCTCGCACAAGGTGGCCTT CCAGGTGGCGAGCATCATGAACCTCTCCCGCCGCCCG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77798:204..440-

>mRNA_H-canaliculatus_M_contigs77798.1.1 ID=mRNA_H-canaliculatus_M_contigs77798.1.1|Name=mRNA_H-canaliculatus_M_contigs77798.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=237bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77798:204..440- (Hapterophycus canaliculatus Oshoro7m male)
GACCTCCCGAAACGCAACAAAACGCCCGACGCTAGGAGTCTCGCCGCGTA
CGACTTCTCCTCCGCGAACGTGACCCTCATCCCGAGCGTGCCGGGCCGCC
ACTCCGGGAAGAACCTGTACAAGTACGGGCACATGCGCGTACGAGCCGTC
CTGGCGAGGGAGGAGGTGCACGTCAGACCCGGCTCGCACAAGGTGGCCTT
CCAGGTGGCGAGCATCATGAACCTCTCCCGCCGCCCG
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