mRNA_H-canaliculatus_M_contigs7764.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7764.1.1 vs.
Match: ATP-binding (cassette transporter, subfamily B, member 4, group TAP protein PpABCB4 MET type n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDT3_ECTSI) HSP 1 Score: 127 bits (319), Expect = 2.360e-32 Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 1
Query: 1 AESEASVQQALDQLVERGAGSTTVVLVAHRLSTVMNADNIAVMDKGRLVEQGTHDSLMGIGGVYSSLVARQVFR 222
AESEASVQQALD+LVERGAGSTTVVLVAHRLSTVMNADNIAV+DKGRLVEQGTHDSL+ GGVYSSLVARQ+ R
Sbjct: 922 AESEASVQQALDKLVERGAGSTTVVLVAHRLSTVMNADNIAVLDKGRLVEQGTHDSLVRAGGVYSSLVARQISR 995
BLAST of mRNA_H-canaliculatus_M_contigs7764.1.1 vs.
Match: ABC (transporter B family n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HJB1_KLENI) HSP 1 Score: 92.0 bits (227), Expect = 6.310e-20 Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 4 ESEASVQQALDQLVERGAGSTTVVLVAHRLSTVMNADNIAVMDKGRLVEQGTHDSLMGIGGVYSSLVARQVFR 222
ESEA VQQALD+L+++G TVVLVAHRLSTV NAD I V+DKG++VEQGTHD L+ GGVY LV RQ+ +
Sbjct: 830 ESEAQVQQALDRLIQQG--GRTVVLVAHRLSTVKNADTIVVLDKGKVVEQGTHDDLLRQGGVYGKLVQRQLAK 900
BLAST of mRNA_H-canaliculatus_M_contigs7764.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IG09_PHYPA) HSP 1 Score: 90.5 bits (223), Expect = 2.190e-19 Identity = 51/74 (68.92%), Postives = 58/74 (78.38%), Query Frame = 1
Query: 4 ESEASVQQALDQLVERGAGSTTVVLVAHRLSTVMNADNIAVMDKGRLVEQGTHDSL-MGIGGVYSSLVARQVFR 222
ESEA VQQALD+L+ G G T+VLVAHRLSTV NADNIAV+DKGRLVEQGTH+ L M GVY LV RQ+ +
Sbjct: 799 ESEALVQQALDRLI--GEGGRTIVLVAHRLSTVRNADNIAVLDKGRLVEQGTHEELLMQKSGVYEKLVRRQLHK 870
BLAST of mRNA_H-canaliculatus_M_contigs7764.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N3J4_9CRYP) HSP 1 Score: 82.4 bits (202), Expect = 1.050e-18 Identity = 42/67 (62.69%), Postives = 52/67 (77.61%), Query Frame = 1
Query: 22 QQALDQLVERGAGSTTVVLVAHRLSTVMNADNIAVMDKGRLVEQGTHDSLMGIGGVYSSLVARQVFR 222
Q+ALD+L+ GAG T+VLVAHRLSTV+ AD IAVMDKG VEQG HD+L+ GG+Y LV +Q+ R
Sbjct: 8 QEALDKLM--GAGGATIVLVAHRLSTVIGADKIAVMDKGMAVEQGNHDALLAQGGIYFRLVQKQLSR 72
BLAST of mRNA_H-canaliculatus_M_contigs7764.1.1 vs.
Match: ATP-binding (cassette transporter, subfamily B, member 4, group TAP protein PpABCB4 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9RGI9_PHYPA) HSP 1 Score: 87.0 bits (214), Expect = 3.530e-18 Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 1
Query: 4 ESEASVQQALDQLVERGAGSTTVVLVAHRLSTVMNADNIAVMDKGRLVEQGTHDSLM-GIGGVYSSLVARQVFR 222
ESEA VQQALD+L+ G G T+VLVAHRLSTV NADNIAV+DKG LVEQGTH+ L+ GVY LV RQ+ +
Sbjct: 483 ESEALVQQALDRLI--GEGGRTIVLVAHRLSTVRNADNIAVLDKGSLVEQGTHEELLLKKSGVYEKLVRRQLHK 554
BLAST of mRNA_H-canaliculatus_M_contigs7764.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K6B8_PHYPA) HSP 1 Score: 87.0 bits (214), Expect = 3.620e-18 Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 1
Query: 4 ESEASVQQALDQLVERGAGSTTVVLVAHRLSTVMNADNIAVMDKGRLVEQGTHDSLM-GIGGVYSSLVARQVFR 222
ESEA VQQALD+L+ G G T+VLVAHRLSTV NADNIAV+DKG LVEQGTH+ L+ GVY LV RQ+ +
Sbjct: 798 ESEALVQQALDRLI--GEGGRTIVLVAHRLSTVRNADNIAVLDKGSLVEQGTHEELLLKKSGVYEKLVRRQLHK 869
BLAST of mRNA_H-canaliculatus_M_contigs7764.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HM78_HEMAN) HSP 1 Score: 81.3 bits (199), Expect = 5.900e-18 Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 1
Query: 4 ESEASVQQALDQLVERGAGSTTVVLVAHRLSTVMNADNIAVMDKGRLVEQGTHDSLMGIGGVYSSLVARQVFR 222
ESEA+VQ ALD+L+ +G TVVLVAHRLSTV+ AD IAVM +G +VE GTH L+ GG+Y LV RQ+ R
Sbjct: 30 ESEATVQAALDRLMAKG--GATVVLVAHRLSTVIGADKIAVMHQGEMVEHGTHSELVARGGMYFRLVERQIAR 100
BLAST of mRNA_H-canaliculatus_M_contigs7764.1.1 vs.
Match: ATP-binding (cassette sub-family B member 8, mitochondrial n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9F2N6_SYMMI) HSP 1 Score: 82.8 bits (203), Expect = 5.900e-18 Identity = 41/74 (55.41%), Postives = 57/74 (77.03%), Query Frame = 1
Query: 1 AESEASVQQALDQLVERGAGSTTVVLVAHRLSTVMNADNIAVMDKGRLVEQGTHDSLMGIGGVYSSLVARQVFR 222
AE+E VQ+ALD+LV R G+ +V+L+AHRLSTVM++D I VMDKG +VEQGTH+ L+ +Y+ LV RQ+ +
Sbjct: 59 AENEGKVQEALDELVHRVEGNCSVMLIAHRLSTVMSSDKIVVMDKGVVVEQGTHEELLKNQNIYAGLVQRQLAK 132
BLAST of mRNA_H-canaliculatus_M_contigs7764.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQT5_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 6.100e-18 Identity = 45/78 (57.69%), Postives = 59/78 (75.64%), Query Frame = 1
Query: 4 ESEASVQQALDQLVERGAGSTTVVLVAHRLSTVMNADNIAVMDKGRLVEQGTHDSLMGIGGVYSSLVARQVFRWDPCL 237
ES+A VQQALD L+ +G TVVLVAHRLSTVMNAD IAV+D G++VE+G+H+ L+ G VY++LV +QV + L
Sbjct: 371 ESQAMVQQALDDLIRQG--GATVVLVAHRLSTVMNADKIAVIDHGKVVEEGSHEQLLTFGSVYATLVRKQVEKKSSLL 446
BLAST of mRNA_H-canaliculatus_M_contigs7764.1.1 vs.
Match: Hypothetical (protein n=5 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HQQ6_POLGL) HSP 1 Score: 85.1 bits (209), Expect = 1.710e-17 Identity = 42/74 (56.76%), Postives = 57/74 (77.03%), Query Frame = 1
Query: 1 AESEASVQQALDQLVERGAGSTTVVLVAHRLSTVMNADNIAVMDKGRLVEQGTHDSLMGIGGVYSSLVARQVFR 222
AE+E VQQALD+LV+ +G+ TV+L+AHRLSTVM AD I V+D GR+VEQG+H L+ +Y+SLV RQ+ +
Sbjct: 662 AENEGQVQQALDELVKSVSGNCTVMLIAHRLSTVMGADKIVVLDSGRVVEQGSHHELLENDSIYASLVQRQIAK 735 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7764.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7764.1.1 >prot_H-canaliculatus_M_contigs7764.1.1 ID=prot_H-canaliculatus_M_contigs7764.1.1|Name=mRNA_H-canaliculatus_M_contigs7764.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=81bp AESEASVQQALDQLVERGAGSTTVVLVAHRLSTVMNADNIAVMDKGRLVEback to top mRNA from alignment at H-canaliculatus_M_contigs7764:845..2128+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7764.1.1 ID=mRNA_H-canaliculatus_M_contigs7764.1.1|Name=mRNA_H-canaliculatus_M_contigs7764.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1284bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7764:845..2128+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7764:845..2128+ >mRNA_H-canaliculatus_M_contigs7764.1.1 ID=mRNA_H-canaliculatus_M_contigs7764.1.1|Name=mRNA_H-canaliculatus_M_contigs7764.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=243bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7764:845..2128+ (Hapterophycus canaliculatus Oshoro7m male)back to top |