mRNA_H-canaliculatus_M_contigs7764.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7764.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7764.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7764.1.1 vs.
Match: ATP-binding (cassette transporter, subfamily B, member 4, group TAP protein PpABCB4 MET type n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDT3_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 2.360e-32
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 1
Query:    1 AESEASVQQALDQLVERGAGSTTVVLVAHRLSTVMNADNIAVMDKGRLVEQGTHDSLMGIGGVYSSLVARQVFR 222
            AESEASVQQALD+LVERGAGSTTVVLVAHRLSTVMNADNIAV+DKGRLVEQGTHDSL+  GGVYSSLVARQ+ R
Sbjct:  922 AESEASVQQALDKLVERGAGSTTVVLVAHRLSTVMNADNIAVLDKGRLVEQGTHDSLVRAGGVYSSLVARQISR 995          
BLAST of mRNA_H-canaliculatus_M_contigs7764.1.1 vs.
Match: ABC (transporter B family n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HJB1_KLENI)

HSP 1 Score: 92.0 bits (227), Expect = 6.310e-20
Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    4 ESEASVQQALDQLVERGAGSTTVVLVAHRLSTVMNADNIAVMDKGRLVEQGTHDSLMGIGGVYSSLVARQVFR 222
            ESEA VQQALD+L+++G    TVVLVAHRLSTV NAD I V+DKG++VEQGTHD L+  GGVY  LV RQ+ +
Sbjct:  830 ESEAQVQQALDRLIQQG--GRTVVLVAHRLSTVKNADTIVVLDKGKVVEQGTHDDLLRQGGVYGKLVQRQLAK 900          
BLAST of mRNA_H-canaliculatus_M_contigs7764.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IG09_PHYPA)

HSP 1 Score: 90.5 bits (223), Expect = 2.190e-19
Identity = 51/74 (68.92%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    4 ESEASVQQALDQLVERGAGSTTVVLVAHRLSTVMNADNIAVMDKGRLVEQGTHDSL-MGIGGVYSSLVARQVFR 222
            ESEA VQQALD+L+  G G  T+VLVAHRLSTV NADNIAV+DKGRLVEQGTH+ L M   GVY  LV RQ+ +
Sbjct:  799 ESEALVQQALDRLI--GEGGRTIVLVAHRLSTVRNADNIAVLDKGRLVEQGTHEELLMQKSGVYEKLVRRQLHK 870          
BLAST of mRNA_H-canaliculatus_M_contigs7764.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N3J4_9CRYP)

HSP 1 Score: 82.4 bits (202), Expect = 1.050e-18
Identity = 42/67 (62.69%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   22 QQALDQLVERGAGSTTVVLVAHRLSTVMNADNIAVMDKGRLVEQGTHDSLMGIGGVYSSLVARQVFR 222
            Q+ALD+L+  GAG  T+VLVAHRLSTV+ AD IAVMDKG  VEQG HD+L+  GG+Y  LV +Q+ R
Sbjct:    8 QEALDKLM--GAGGATIVLVAHRLSTVIGADKIAVMDKGMAVEQGNHDALLAQGGIYFRLVQKQLSR 72          
BLAST of mRNA_H-canaliculatus_M_contigs7764.1.1 vs.
Match: ATP-binding (cassette transporter, subfamily B, member 4, group TAP protein PpABCB4 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9RGI9_PHYPA)

HSP 1 Score: 87.0 bits (214), Expect = 3.530e-18
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    4 ESEASVQQALDQLVERGAGSTTVVLVAHRLSTVMNADNIAVMDKGRLVEQGTHDSLM-GIGGVYSSLVARQVFR 222
            ESEA VQQALD+L+  G G  T+VLVAHRLSTV NADNIAV+DKG LVEQGTH+ L+    GVY  LV RQ+ +
Sbjct:  483 ESEALVQQALDRLI--GEGGRTIVLVAHRLSTVRNADNIAVLDKGSLVEQGTHEELLLKKSGVYEKLVRRQLHK 554          
BLAST of mRNA_H-canaliculatus_M_contigs7764.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K6B8_PHYPA)

HSP 1 Score: 87.0 bits (214), Expect = 3.620e-18
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    4 ESEASVQQALDQLVERGAGSTTVVLVAHRLSTVMNADNIAVMDKGRLVEQGTHDSLM-GIGGVYSSLVARQVFR 222
            ESEA VQQALD+L+  G G  T+VLVAHRLSTV NADNIAV+DKG LVEQGTH+ L+    GVY  LV RQ+ +
Sbjct:  798 ESEALVQQALDRLI--GEGGRTIVLVAHRLSTVRNADNIAVLDKGSLVEQGTHEELLLKKSGVYEKLVRRQLHK 869          
BLAST of mRNA_H-canaliculatus_M_contigs7764.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HM78_HEMAN)

HSP 1 Score: 81.3 bits (199), Expect = 5.900e-18
Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    4 ESEASVQQALDQLVERGAGSTTVVLVAHRLSTVMNADNIAVMDKGRLVEQGTHDSLMGIGGVYSSLVARQVFR 222
            ESEA+VQ ALD+L+ +G    TVVLVAHRLSTV+ AD IAVM +G +VE GTH  L+  GG+Y  LV RQ+ R
Sbjct:   30 ESEATVQAALDRLMAKG--GATVVLVAHRLSTVIGADKIAVMHQGEMVEHGTHSELVARGGMYFRLVERQIAR 100          
BLAST of mRNA_H-canaliculatus_M_contigs7764.1.1 vs.
Match: ATP-binding (cassette sub-family B member 8, mitochondrial n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9F2N6_SYMMI)

HSP 1 Score: 82.8 bits (203), Expect = 5.900e-18
Identity = 41/74 (55.41%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    1 AESEASVQQALDQLVERGAGSTTVVLVAHRLSTVMNADNIAVMDKGRLVEQGTHDSLMGIGGVYSSLVARQVFR 222
            AE+E  VQ+ALD+LV R  G+ +V+L+AHRLSTVM++D I VMDKG +VEQGTH+ L+    +Y+ LV RQ+ +
Sbjct:   59 AENEGKVQEALDELVHRVEGNCSVMLIAHRLSTVMSSDKIVVMDKGVVVEQGTHEELLKNQNIYAGLVQRQLAK 132          
BLAST of mRNA_H-canaliculatus_M_contigs7764.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQT5_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 6.100e-18
Identity = 45/78 (57.69%), Postives = 59/78 (75.64%), Query Frame = 1
Query:    4 ESEASVQQALDQLVERGAGSTTVVLVAHRLSTVMNADNIAVMDKGRLVEQGTHDSLMGIGGVYSSLVARQVFRWDPCL 237
            ES+A VQQALD L+ +G    TVVLVAHRLSTVMNAD IAV+D G++VE+G+H+ L+  G VY++LV +QV +    L
Sbjct:  371 ESQAMVQQALDDLIRQG--GATVVLVAHRLSTVMNADKIAVIDHGKVVEEGSHEQLLTFGSVYATLVRKQVEKKSSLL 446          
BLAST of mRNA_H-canaliculatus_M_contigs7764.1.1 vs.
Match: Hypothetical (protein n=5 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HQQ6_POLGL)

HSP 1 Score: 85.1 bits (209), Expect = 1.710e-17
Identity = 42/74 (56.76%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    1 AESEASVQQALDQLVERGAGSTTVVLVAHRLSTVMNADNIAVMDKGRLVEQGTHDSLMGIGGVYSSLVARQVFR 222
            AE+E  VQQALD+LV+  +G+ TV+L+AHRLSTVM AD I V+D GR+VEQG+H  L+    +Y+SLV RQ+ +
Sbjct:  662 AENEGQVQQALDELVKSVSGNCTVMLIAHRLSTVMGADKIVVLDSGRVVEQGSHHELLENDSIYASLVQRQIAK 735          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7764.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ATP-binding2.360e-3290.54cassette transporter, subfamily B, member 4, group... [more]
ABC6.310e-2065.75transporter B family n=1 Tax=Klebsormidium nitens ... [more]
Uncharacterized2.190e-1968.92protein n=2 Tax=Physcomitrium patens TaxID=3218 Re... [more]
Hypothetical1.050e-1862.69protein (Fragment) n=1 Tax=Cryptomonas curvata Tax... [more]
ATP-binding3.530e-1866.22cassette transporter, subfamily B, member 4, group... [more]
Uncharacterized3.620e-1866.22protein n=1 Tax=Physcomitrium patens TaxID=3218 Re... [more]
Hypothetical5.900e-1860.27protein n=2 Tax=Hemiselmis andersenii TaxID=464988... [more]
ATP-binding5.900e-1855.41cassette sub-family B member 8, mitochondrial n=1 ... [more]
Hypothetical6.100e-1857.69protein (Fragment) n=1 Tax=Dictyocha speculum TaxI... [more]
Hypothetical1.710e-1756.76protein n=5 Tax=Polarella glacialis TaxID=89957 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7764contigH-canaliculatus_M_contigs7764:845..2128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LDT3
PFAMsABC_membrane,ABC_tran
Model size243
Max annot lvl2759|Eukaryota
KEGG koko:K05657
KEGG TC3.A.1.201
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.87e-33
EggNOG OGsCOG1132@1|root,KOG0058@2759|Eukaryota
DescriptionATPase activity, coupled to transmembrane movement of substances
Cds size243
COG categoryV
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854113.6996417-CDS-H-canaliculatus_M_contigs7764:844..9331696854113.6996417-CDS-H-canaliculatus_M_contigs7764:844..933Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7764 845..933 +
1696854113.7134404-CDS-H-canaliculatus_M_contigs7764:1974..21281696854113.7134404-CDS-H-canaliculatus_M_contigs7764:1974..2128Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7764 1975..2128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7764.1.1prot_H-canaliculatus_M_contigs7764.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7764 845..2128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7764.1.1

>prot_H-canaliculatus_M_contigs7764.1.1 ID=prot_H-canaliculatus_M_contigs7764.1.1|Name=mRNA_H-canaliculatus_M_contigs7764.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=81bp
AESEASVQQALDQLVERGAGSTTVVLVAHRLSTVMNADNIAVMDKGRLVE
QGTHDSLMGIGGVYSSLVARQVFRWDPCLV*
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mRNA from alignment at H-canaliculatus_M_contigs7764:845..2128+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7764.1.1 ID=mRNA_H-canaliculatus_M_contigs7764.1.1|Name=mRNA_H-canaliculatus_M_contigs7764.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1284bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7764:845..2128+ (Hapterophycus canaliculatus Oshoro7m male)
GCGGAGTCGGAGGCGTCGGTGCAGCAGGCCCTCGACCAGCTCGTTGAGAG AGGCGCGGGAAGCACGACGGTCGTGCTCGTCGCTCACCGGTGAGGAGCGA CAGCGGTCGGCCACCGCCACCGCAAGCCTGACCGAAATCCCAGCAGCAAC AGCGACTGCAACTGCAACTGCAACGGCAAGGGCAACAGCAACGGCAGTAG CAGTAGCGACAGCAATAGCAACAGCAATGACCACGGTAACGGTAACGGCA ACGGCAACAAGGCTGGCTGACAGGAGACACACGCGCGGAAAGTCGCGCCA ACTCAACCACCCCCGTAGGCTAACACTACACGGATTCTCTGTTTGTCACC GGGGCAAGTGGACTGACTGACGCGCGTGTGTTGTCTTGAAAGCTGGTTGG ACTGATGTCAGTGCGGCGAGAGTTCGGTATGCCTACCTGGTGCTCACCGC TCGCCCGAAGAGATGCGTAGCTGTCGCGGGATGTTTGATTTCGCAACAGC ATAGTCTCTGATGCAAGCGCCACCTCGTTATTTCCCCGCTGCGGGGCAAG CGGTGTCGGATCGCCGCCTTGGCACGAGCTCGGTCTACTCGTGTGTGTTC TTGATCGTCTCCGCCCATCTACCGAGTCGCCCCTGACACCACCTTAGCTC TCTTGCTAACACCGCGGCCCAAACCGGGAATCCGCCGGATGTGAAAGCAC AGCAACGCCCACCTCGGGGAACTCCTGCCTTGCTGTGGTTCTGGCGGTAC AGACCGCGTGTGCGCCGGGTGGCACATCATTGCCATTTTCTTCTAGCTGT CACGCCGAGACCGCGAACGCGCTCGCACGAGGACAGAAAAAGCGTTACCC GGAAGATTCTCAAGGGCTGCGTGGGAAGGCCTCGTGTCTCTGGGGAAGGG TCAACCGCACGAGAGCCCGAGAAGCGCGAGCCGGTTGCGCGTTGACGCGG GGGGGGTTGCCGTCACCGTCCAGGCGTTCTTGCTGACAAGATGGCGGACG TTGCGTTTTTTTGCGCGTCAGCTTCCCGAGACTTTTTGTCCCTCCTGGCC CAAGCGACGCCAATCTTGCATGTGCGATCGCTGCTTCACGGTTGGTTGGA CGACTCAAACGCGACTCTCCGCTTGCGCAGGTTGTCGACGGTGATGAACG CGGACAACATCGCCGTAATGGACAAGGGTCGGCTGGTCGAGCAGGGCACC CACGACAGCCTCATGGGGATCGGCGGAGTGTACTCGAGCCTCGTGGCGCG GCAGGTATTTCGATGGGACCCGTGCCTGGTGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7764:845..2128+

>mRNA_H-canaliculatus_M_contigs7764.1.1 ID=mRNA_H-canaliculatus_M_contigs7764.1.1|Name=mRNA_H-canaliculatus_M_contigs7764.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=243bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7764:845..2128+ (Hapterophycus canaliculatus Oshoro7m male)
GCGGAGTCGGAGGCGTCGGTGCAGCAGGCCCTCGACCAGCTCGTTGAGAG
AGGCGCGGGAAGCACGACGGTCGTGCTCGTCGCTCACCGGTTGTCGACGG
TGATGAACGCGGACAACATCGCCGTAATGGACAAGGGTCGGCTGGTCGAG
CAGGGCACCCACGACAGCCTCATGGGGATCGGCGGAGTGTACTCGAGCCT
CGTGGCGCGGCAGGTATTTCGATGGGACCCGTGCCTGGTGTAG
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