mRNA_H-canaliculatus_M_contigs77600.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77600.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77600.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs77600.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPE5_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 1.350e-44
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 1
Query:   19 RIVYCSATGASEPRNLGYMTRLGLWGAIGSPFPGGFKDFLTAVDGRGVGAMELVAMHLKQTGSFVCRTLSFSGCGFEV 252
            RIVYCSATGASEPRNLGYMTRLGLWGAIGSPFPGGFKDFLTAVDGRGVGAMELVAMHLKQTGSFVCRTLSFSGC FE+
Sbjct:  231 RIVYCSATGASEPRNLGYMTRLGLWGAIGSPFPGGFKDFLTAVDGRGVGAMELVAMHLKQTGSFVCRTLSFSGCAFEL 308          
BLAST of mRNA_H-canaliculatus_M_contigs77600.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL28_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 3.410e-42
Identity = 74/78 (94.87%), Postives = 75/78 (96.15%), Query Frame = 1
Query:   19 RIVYCSATGASEPRNLGYMTRLGLWGAIGSPFPGGFKDFLTAVDGRGVGAMELVAMHLKQTGSFVCRTLSFSGCGFEV 252
            RIVYCSATGASEPRNLGYMTRLGLWGAIGSPFPGGFKDFLT VDGRGVGAMELVAMHLKQ GSFVCRTLSFSGC FE+
Sbjct:  454 RIVYCSATGASEPRNLGYMTRLGLWGAIGSPFPGGFKDFLTPVDGRGVGAMELVAMHLKQRGSFVCRTLSFSGCPFEL 531          
BLAST of mRNA_H-canaliculatus_M_contigs77600.1.1 vs.
Match: P-loop (containing NTP hydrolase pore-1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH69_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.980e-34
Identity = 60/78 (76.92%), Postives = 70/78 (89.74%), Query Frame = 1
Query:   19 RIVYCSATGASEPRNLGYMTRLGLWGAIGSPFPGGFKDFLTAVDGRGVGAMELVAMHLKQTGSFVCRTLSFSGCGFEV 252
            R+VYCSATGASEPRNLGYMTRLGLWG  G+PFP GF+  L  VDG GVGAME++AMHLKQ+G+F+CRTLSF+GCGFE+
Sbjct:  276 RVVYCSATGASEPRNLGYMTRLGLWGQ-GTPFPSGFEQLLGTVDGHGVGAMEMMAMHLKQSGAFLCRTLSFAGCGFEL 352          
BLAST of mRNA_H-canaliculatus_M_contigs77600.1.1 vs.
Match: Protein (strawberry notch homolog 1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WME0_9CHLO)

HSP 1 Score: 117 bits (292), Expect = 1.190e-28
Identity = 58/78 (74.36%), Postives = 63/78 (80.77%), Query Frame = 1
Query:   19 RIVYCSATGASEPRNLGYMTRLGLWGAIGSPFPGGFKDFLTAVDGRGVGAMELVAMHLKQTGSFVCRTLSFSGCGFEV 252
            R+VYCSATGASEPRNLGYM RLGLWG +G+P    F DFL AV GRGVGA+ELVAM +K  G FVCRTLSF GC FEV
Sbjct:  444 RVVYCSATGASEPRNLGYMERLGLWG-VGTPSFATFPDFLEAVGGRGVGALELVAMDMKARGMFVCRTLSFKGCEFEV 520          
BLAST of mRNA_H-canaliculatus_M_contigs77600.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZS5_COCSC)

HSP 1 Score: 115 bits (289), Expect = 3.010e-28
Identity = 58/78 (74.36%), Postives = 62/78 (79.49%), Query Frame = 1
Query:   19 RIVYCSATGASEPRNLGYMTRLGLWGAIGSPFPGGFKDFLTAVDGRGVGAMELVAMHLKQTGSFVCRTLSFSGCGFEV 252
            R+VYCSATGASEPRNLGYM RLGLWG  G+P    F DFL AV GRGVGA+ELVAM +K  G FVCRTLSF GC FEV
Sbjct:  230 RVVYCSATGASEPRNLGYMERLGLWGE-GTPSFASFPDFLEAVGGRGVGALELVAMDMKARGMFVCRTLSFKGCEFEV 306          
BLAST of mRNA_H-canaliculatus_M_contigs77600.1.1 vs.
Match: AAA_34 (domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNP5_AURAN)

HSP 1 Score: 112 bits (281), Expect = 1.890e-27
Identity = 55/78 (70.51%), Postives = 60/78 (76.92%), Query Frame = 1
Query:   19 RIVYCSATGASEPRNLGYMTRLGLWGAIGSPFPGGFKDFLTAVDGRGVGAMELVAMHLKQTGSFVCRTLSFSGCGFEV 252
            R+VYCSATGASEPR+LGYM RLGLWG    PF   F+ FLT VD RGVG MELVAMHLKQ G+ VCR LSF  C FE+
Sbjct:  274 RVVYCSATGASEPRHLGYMDRLGLWGGDACPFAS-FRSFLTEVDKRGVGMMELVAMHLKQRGALVCRALSFKNCTFEL 350          
BLAST of mRNA_H-canaliculatus_M_contigs77600.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZA5_9STRA)

HSP 1 Score: 108 bits (271), Expect = 8.180e-26
Identity = 55/79 (69.62%), Postives = 62/79 (78.48%), Query Frame = 1
Query:   19 RIVYCSATGASEPRNLGYMTRLGLWGAI-GSPFPGGFKDFLTAVDGRGVGAMELVAMHLKQTGSFVCRTLSFSGCGFEV 252
            RIVYCSATGASEPR+ GYM RLGLWG+  G+PFP  F+ FL  V+ RGVG MELVAMHLKQ G+ VCR LSF  C FE+
Sbjct:  315 RIVYCSATGASEPRHFGYMERLGLWGSHPGAPFPN-FEVFLDEVESRGVGMMELVAMHLKQQGALVCRALSFKNCTFEL 392          
BLAST of mRNA_H-canaliculatus_M_contigs77600.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S7U1_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.510e-25
Identity = 53/78 (67.95%), Postives = 60/78 (76.92%), Query Frame = 1
Query:   19 RIVYCSATGASEPRNLGYMTRLGLWGAIGSPFPGGFKDFLTAVDGRGVGAMELVAMHLKQTGSFVCRTLSFSGCGFEV 252
            R+VYCSATGASEP++LGYM RLGLWG   +PF G F DF  AV+ RGVG MELVAMHLKQ G+ V R LSF  C FE+
Sbjct:  290 RVVYCSATGASEPKHLGYMDRLGLWGGSDTPF-GDFDDFRRAVESRGVGMMELVAMHLKQRGALVSRALSFKSCTFEL 366          
BLAST of mRNA_H-canaliculatus_M_contigs77600.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A0M8_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.520e-25
Identity = 53/78 (67.95%), Postives = 60/78 (76.92%), Query Frame = 1
Query:   19 RIVYCSATGASEPRNLGYMTRLGLWGAIGSPFPGGFKDFLTAVDGRGVGAMELVAMHLKQTGSFVCRTLSFSGCGFEV 252
            R+VYCSATGASEP++LGYM RLGLWG   +PF G F DF  AV+ RGVG MELVAMHLKQ G+ V R LSF  C FE+
Sbjct:  290 RVVYCSATGASEPKHLGYMDRLGLWGGSDTPF-GDFDDFRRAVESRGVGMMELVAMHLKQRGALVSRALSFKSCTFEL 366          
BLAST of mRNA_H-canaliculatus_M_contigs77600.1.1 vs.
Match: Putative (RING/FYVE/PHD zinc finger superfamily protein n=4 Tax=Helianthus annuus TaxID=4232 RepID=A0A251V8M3_HELAN)

HSP 1 Score: 107 bits (268), Expect = 2.070e-25
Identity = 55/78 (70.51%), Postives = 63/78 (80.77%), Query Frame = 1
Query:   19 RIVYCSATGASEPRNLGYMTRLGLWGAIGSPFPGGFKDFLTAVDGRGVGAMELVAMHLKQTGSFVCRTLSFSGCGFEV 252
            R+VYCSATGASEPRNLGYM RLGLWGA G+ F G F+DFL A+D  GVGA+ELVAM +K  G +VCRTLS+ G  FEV
Sbjct:  375 RVVYCSATGASEPRNLGYMVRLGLWGA-GTSFEG-FRDFLGALDKGGVGALELVAMDMKARGMYVCRTLSYKGVEFEV 450          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77600.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.350e-4497.44protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.410e-4294.87protein (Fragment) n=1 Tax=Ectocarpus siliculosus ... [more]
P-loop2.980e-3476.92containing NTP hydrolase pore-1-domain-containing ... [more]
Protein1.190e-2874.36strawberry notch homolog 1 n=1 Tax=Coccomyxa sp. O... [more]
Uncharacterized3.010e-2874.36protein (Fragment) n=1 Tax=Coccomyxa subellipsoide... [more]
AAA_341.890e-2770.51domain-containing protein (Fragment) n=1 Tax=Aureo... [more]
Hypothetical8.180e-2669.62protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 ... [more]
Hypothetical1.510e-2567.95protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Hypothetical1.520e-2567.95protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Putative2.070e-2570.51RING/FYVE/PHD zinc finger superfamily protein n=4 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77600contigH-canaliculatus_M_contigs77600:196..447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LL28
PFAMsAAA_34
Model size252
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.6e-43
EggNOG OGsKOG1513@1|root,KOG1513@2759|Eukaryota
Descriptioncellular response to interleukin-11
Cds size252
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854113.4406314-CDS-H-canaliculatus_M_contigs77600:195..4471696854113.4406314-CDS-H-canaliculatus_M_contigs77600:195..447Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77600 196..447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77600.1.1prot_H-canaliculatus_M_contigs77600.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77600 196..447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77600.1.1

>prot_H-canaliculatus_M_contigs77600.1.1 ID=prot_H-canaliculatus_M_contigs77600.1.1|Name=mRNA_H-canaliculatus_M_contigs77600.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=84bp
TTTKTTRIVYCSATGASEPRNLGYMTRLGLWGAIGSPFPGGFKDFLTAVD
GRGVGAMELVAMHLKQTGSFVCRTLSFSGCGFEV
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mRNA from alignment at H-canaliculatus_M_contigs77600:196..447+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77600.1.1 ID=mRNA_H-canaliculatus_M_contigs77600.1.1|Name=mRNA_H-canaliculatus_M_contigs77600.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=252bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77600:196..447+ (Hapterophycus canaliculatus Oshoro7m male)
ACAACTACCAAAACCACAAGAATTGTTTACTGCTCGGCCACCGGCGCCTC CGAGCCGAGAAACCTGGGCTACATGACTCGCCTCGGCCTCTGGGGAGCGA TCGGCAGCCCGTTCCCCGGCGGTTTCAAGGACTTCTTGACGGCCGTGGAC GGCAGGGGTGTCGGCGCCATGGAGCTTGTGGCGATGCACCTCAAGCAGAC CGGGTCGTTCGTGTGCCGGACGCTGTCGTTTAGCGGCTGCGGTTTCGAGG TG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77600:196..447+

>mRNA_H-canaliculatus_M_contigs77600.1.1 ID=mRNA_H-canaliculatus_M_contigs77600.1.1|Name=mRNA_H-canaliculatus_M_contigs77600.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=252bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77600:196..447+ (Hapterophycus canaliculatus Oshoro7m male)
ACAACTACCAAAACCACAAGAATTGTTTACTGCTCGGCCACCGGCGCCTC
CGAGCCGAGAAACCTGGGCTACATGACTCGCCTCGGCCTCTGGGGAGCGA
TCGGCAGCCCGTTCCCCGGCGGTTTCAAGGACTTCTTGACGGCCGTGGAC
GGCAGGGGTGTCGGCGCCATGGAGCTTGTGGCGATGCACCTCAAGCAGAC
CGGGTCGTTCGTGTGCCGGACGCTGTCGTTTAGCGGCTGCGGTTTCGAGG
TG
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