mRNA_H-canaliculatus_F_contig1535.3965.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1535.3965.1
Unique NamemRNA_H-canaliculatus_F_contig1535.3965.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1535.3965.1 vs. uniprot
Match: D8LID7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LID7_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 1.180e-49
Identity = 80/98 (81.63%), Postives = 88/98 (89.80%), Query Frame = 1 
Query:  193 SQYEQGSSEPSAGGSLGGSSEMQLQELIVDFTDDGRILLEVKGVKGNECRVITEDLIKALGDVITTENTEEYFEDKVVNVQHDPIKLGWSYDANKPEW 486
            S YEQ S EPSA G +  SSEM+LQELIVDFTDDGRILLEVKGVKG+ECRVITEDLIKALGDVITTENTEEYF++KVVN Q D ++LGWSYDA+KPEW
Sbjct:    2 STYEQSSPEPSASGEMSSSSEMELQELIVDFTDDGRILLEVKGVKGSECRVITEDLIKALGDVITTENTEEYFQEKVVNTQKDAVQLGWSYDASKPEW 99
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BLAST of mRNA_H-canaliculatus_F_contig1535.3965.1 vs. uniprot
Match: A0A6H5JNP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP0_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 3.140e-41
Identity = 67/78 (85.90%), Postives = 75/78 (96.15%), Query Frame = 1 
Query:  253 EMQLQELIVDFTDDGRILLEVKGVKGNECRVITEDLIKALGDVITTENTEEYFEDKVVNVQHDPIKLGWSYDANKPEW 486
            EM+LQELIVDFTDDGRILLEVKGVKG+ECRVITEDLIKALGDVITTENTEEYF+++VVN Q D ++LGWSYDA+KPEW
Sbjct:   84 EMELQELIVDFTDDGRILLEVKGVKGSECRVITEDLIKALGDVITTENTEEYFQERVVNTQKDAVQLGWSYDASKPEW 161
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BLAST of mRNA_H-canaliculatus_F_contig1535.3965.1 vs. uniprot
Match: A0A2I0PSC1_9EURY (Uncharacterized protein n=2 Tax=unclassified Methanomicrobiales TaxID=38064 RepID=A0A2I0PSC1_9EURY)

HSP 1 Score: 50.1 bits (118), Expect = 2.090e-5
Identity = 22/56 (39.29%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:  256 MQLQELIVDFTDDGRILLEVKGVKGNECRVITEDLIKALGDVITTENTEEYFEDKV 423
            M +QEL +   ++GR+L+ V GVKG +C  +T++L  A+GDV     + +Y+E  V
Sbjct:    1 MTMQELEITIDNEGRVLIHVNGVKGEDCLALTKNLENAVGDVQERSFSSDYYEQPV 56
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BLAST of mRNA_H-canaliculatus_F_contig1535.3965.1 vs. uniprot
Match: A0A7S0T336_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T336_9RHOD)

HSP 1 Score: 50.8 bits (120), Expect = 6.430e-5
Identity = 24/54 (44.44%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:  262 LQELIVDFTDDGRILLEVKGVKGNECRVITEDLIKALGDVITTENTEEYFEDKV 423
            +QE+      DGR+   VKGVKG +C  IT+D+ + LG+V++ E T EYFE+ +
Sbjct:   84 VQEIEYRIHQDGRVEQVVKGVKGAKCVDITKDIEETLGEVVSQEKTNEYFENTI 137
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BLAST of mRNA_H-canaliculatus_F_contig1535.3965.1 vs. uniprot
Match: A0A1E7FR16_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FR16_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.260e-5
Identity = 29/83 (34.94%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:  184 RMSSQYEQGSSEPSAGGSLGGSSEMQ---LQELIVDFTDDGRILLEVKGVKGNECRVITEDLIKALGDVITTENTEEYFEDKV 423
            R+ + Y   S E +A G  GG  + Q   L+++       GR+  +V GVKG +C  +T +L + LG+VI+T+ TEE +E+++
Sbjct:   38 RLYNDYSGNSWESAASGQSGGQQKAQSGRLEQVTFKIFPGGRVEEKVVGVKGQQCLEVTRELNQKLGNVISTQPTEEMYEEEI 120
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1535.3965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LID7_ECTSI1.180e-4981.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNP0_9PHAE3.140e-4185.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2I0PSC1_9EURY2.090e-539.29Uncharacterized protein n=2 Tax=unclassified Metha... [more]
A0A7S0T336_9RHOD6.430e-544.44Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
A0A1E7FR16_9STRA8.260e-534.94Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1535contigH-canaliculatus_F_contig1535:16305..18504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionProtein of unknown function DUF2997
Ec32 orthologEc-18_004050.1
Exons3
Model size489
Cds size489
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1535.3965.1prot_H-canaliculatus_F_contig1535.3965.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1535 16305..18504 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929272.849212-CDS-H-canaliculatus_F_contig1535:16304..166311622929272.849212-CDS-H-canaliculatus_F_contig1535:16304..16631Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1535 16305..16631 +
1696845745.3136168-CDS-H-canaliculatus_F_contig1535:16304..166311696845745.3136168-CDS-H-canaliculatus_F_contig1535:16304..16631Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1535 16305..16631 +
1622929272.8827443-CDS-H-canaliculatus_F_contig1535:17889..180001622929272.8827443-CDS-H-canaliculatus_F_contig1535:17889..18000Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1535 17890..18000 +
1696845745.3258307-CDS-H-canaliculatus_F_contig1535:17889..180001696845745.3258307-CDS-H-canaliculatus_F_contig1535:17889..18000Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1535 17890..18000 +
1622929272.8934736-CDS-H-canaliculatus_F_contig1535:18453..185041622929272.8934736-CDS-H-canaliculatus_F_contig1535:18453..18504Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1535 18454..18504 +
1696845745.336267-CDS-H-canaliculatus_F_contig1535:18453..185041696845745.336267-CDS-H-canaliculatus_F_contig1535:18453..18504Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1535 18454..18504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1535.3965.1

>prot_H-canaliculatus_F_contig1535.3965.1 ID=prot_H-canaliculatus_F_contig1535.3965.1|Name=mRNA_H-canaliculatus_F_contig1535.3965.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=163bp
MVIASLTRSLFVVLLLAAYAVEAFVVTARPPASYSRRSFRQQRQQQRSTP
KTSAAPPLTPARMSSQYEQGSSEPSAGGSLGGSSEMQLQELIVDFTDDGR
ILLEVKGVKGNECRVITEDLIKALGDVITTENTEEYFEDKVVNVQHDPIK
LGWSYDANKPEW*
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mRNA from alignment at H-canaliculatus_F_contig1535:16305..18504+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1535.3965.1 ID=mRNA_H-canaliculatus_F_contig1535.3965.1|Name=mRNA_H-canaliculatus_F_contig1535.3965.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2200bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1535:16305..18504+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGATCGCCTCGCTTACCCGATCTCTCTTCGTGGTACTGCTGCTTGC
AGCCTACGCCGTGGAAGCCTTCGTCGTTACAGCGCGGCCCCCTGCTTCGT
ATTCGAGACGATCCTTCAGACAGCAGCGGCAGCAGCAGCGGTCGACACCA
AAAACTTCTGCAGCGCCTCCTCTCACCCCAGCTCGCATGTCCTCGCAGTA
CGAGCAAGGATCTTCAGAGCCGTCCGCCGGTGGGAGTCTTGGGGGTTCGT
CGGAGATGCAGCTGCAGGAGCTGATTGTTGATTTCACGGATGATGGTCGG
ATTCTGCTCGAGGTTAAGGGTGTCAAGGTAAGAGCTCTGGAATCAAAAAG
GTTTGAAATGTTGAAGGATCCGTGCTCGTCTGTGCACGTCAGCGAAAGCA
AACGCGGCGGGCAGCGGACAGGTGAATGTTCTTCGGCGGGAAGGTATTGC
AGCAAAATGTCGTAGTTGACTTCTCGGGGACCTCCAGTGATCCCATTGTT
ATGGATGGGGGGCACAGAACACAAATAGCAGATCCGAAATACCTTGTCCC
ATAGGTAGGCGGTGCATTTTTATTTTTTTGCTGCATTGGGCGCGTGCTCC
TTTTCAGCTCTCTCCGGTACAGCAGTAGCGGCCCGATCATAAGAAACTGA
AATTTCAGCCGAGCCTGGGTTTCTTATCGTACTCATATAGGATTTAGTGT
GGCACTCGCAACGGAGCCCCTCTTTATCGTTAATCTGAGCCTCGCTTTCT
TATGATCGAGTTTCTTATGAGCGGTCCGGTACTGTATCGCAGTCGCGTCG
CGTGCCCTTCGCCTTCTTCCTTCTATTCAAACGCCTTCTTCCTTCTACTC
AAACAGGGACAGCATTTTCCTCTGACAGAAATCATCGCCCGGGGTAGTCG
ACGAAGATGCTGGGTCGAAGCAAGCATTGCATTGAGTTTTCGATTATGGA
CATAGACGTCGAGTGTCAACGCTGTTTCTTCTGTGTTAAACTGATCAGCA
GTTTACATCAACTCCAGACTACAGGTATCATGAACGAAGTAGATCCTGCG
GAGTGTACTGATCGTTTTCTGCATACCGATCACGTACGAACGTCATCGAT
ACTATCCGGACGTGCAACAAATGCTTGGTAACCTACGAAAGTGGAGGCCA
GAGCACGCCTCTCCATAAGAACTACATTCCGTCTTAAGACAGTTAGACTA
TCGAGGCCATCCCGTCGCACTGGAAATTACGGATTGATTCGTGAAGGCTC
TTTGTTTGCATGGGAGCAATCTAGAATTTATGAGGTCAACCCAAGGACAA
CCACACACCGCTAGCATCGGTAGCATGGACAACAGCGACGACATTAACAA
CATCAACACCCACGACGGCAACGAAAACGGCAGCAAAAACACAATCTATA
ACACCCGCACAGGTACACATAGAGGCTGACATTCCTCAAAAGCAGCACAG
ACCAAGCATGGAATCTGTGTTTCGTCTGCCTTCCTGCCTACATATAAGGA
CGCCAGCGGGAGCCTCGAAAAAACGCTTTTACTCTCTGAACTCAAGTCGG
GTCTCGGATCCTGTTGTATTGTGTAAAATGTTCAGGGGAACGAGTGCAGG
GTCATCACGGAAGACCTGATCAAAGCGCTCGGGGACGTGATTACGACGGA
GAACACCGAAGAATACTTCGAGGACAAGGTCGTCAACGTCCAACATGTGA
GCAAGGAAGCCTGCAATCCGCCGGTGAATTGTCCTTCATTCGACAAGGAT
GACGGTATCCCCAAGCATTTGTTCATCGCGCACGACCTCGGTGGAAAAGG
ACTCGAATCTTACCTTAGCTTATCCACCGGTGCCTTTGAAAGTAGCCCTG
TCGATTCTCTGGCTGATTGAGTAGCTTTCTGGTCGCGAAGAGGTCCATTC
ATGGACGAGCGCGATGGTCGTTGTCCGGAGACAACGGTGATCGTTGTCGA
GAGACAACGACGGTAATAATTATGTGATTGCTTCGAATGAAGCCCAACGT
TTTGGGCTGCGCAAAGTGTTTTATCCTATCGTATGAAGCTCCTTGTTCGA
TTTGTTCGCTGAAATTTACGTTCCCTTCAGGTCAGACACTAGGAACAAAT
GCCCCCCCCCCCTCTCCCTCTGGCCCCGATCTCATGTTGCCGCAAACAGG
ATCCCATTAAGCTAGGTTGGTCGTACGATGCGAACAAGCCCGAATGGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1535:16305..18504+

>mRNA_H-canaliculatus_F_contig1535.3965.1 ID=mRNA_H-canaliculatus_F_contig1535.3965.1|Name=mRNA_H-canaliculatus_F_contig1535.3965.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=978bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1535:16305..18504+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGATCGCCTCGCTTACCCGATCTCTCTTCGTGGTACTGCTGCTTGC
AGCCTACGCCGTGGAAGCCTTCGTCGTTACAGCGCGGCCCCCTGCTTCGT
ATTCGAGACGATCCTTCAGACAGCAGCGGCAGCAGCAGCGGTCGACACCA
AAAACTTCTGCAGCGCCTCCTCTCACCCCAGCTCGCATGTCCTCGCAGTA
CGAGCAAGGATCTTCAGAGCCGTCCGCCGGTGGGAGTCTTGGGGGTTCGT
CGGAGATGCAGCTGCAGGAGCTGATTGTTGATTTCACGGATGATGGTCGG
ATTCTGCTCGAGGTTAAGGGTGTCAAGATGGTGATCGCCTCGCTTACCCG
ATCTCTCTTCGTGGTACTGCTGCTTGCAGCCTACGCCGTGGAAGCCTTCG
TCGTTACAGCGCGGCCCCCTGCTTCGTATTCGAGACGATCCTTCAGACAG
CAGCGGCAGCAGCAGCGGTCGACACCAAAAACTTCTGCAGCGCCTCCTCT
CACCCCAGCTCGCATGTCCTCGCAGTACGAGCAAGGATCTTCAGAGCCGT
CCGCCGGTGGGAGTCTTGGGGGTTCGTCGGAGATGCAGCTGCAGGAGCTG
ATTGTTGATTTCACGGATGATGGTCGGATTCTGCTCGAGGTTAAGGGTGT
CAAGGGGAACGAGTGCAGGGTCATCACGGAAGACCTGATCAAAGCGCTCG
GGGACGTGATTACGACGGAGAACACCGAAGAATACTTCGAGGACAAGGTC
GTCAACGTCCAACATGGGAACGAGTGCAGGGTCATCACGGAAGACCTGAT
CAAAGCGCTCGGGGACGTGATTACGACGGAGAACACCGAAGAATACTTCG
AGGACAAGGTCGTCAACGTCCAACATGATCCCATTAAGCTAGGTTGGTCG
TACGATGCGAACAAGCCCGAATGGTAAGATCCCATTAAGCTAGGTTGGTC
GTACGATGCGAACAAGCCCGAATGGTAA
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