prot_H-canaliculatus_F_contig15247.3905.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-canaliculatus_F_contig15247.3905.1
Unique Name	prot_H-canaliculatus_F_contig15247.3905.1
Type	polypeptide
Organism	Hapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length	99

Homology

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BLAST of mRNA_H-canaliculatus_F_contig15247.3905.1 vs. uniprot
Match: D8LML1_ECTSI (Heterogeneous nuclear ribonucleoprotein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LML1_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 9.640e-58
Identity = 94/99 (94.95%), Postives = 97/99 (97.98%), Query Frame = 0

Query:    1 SLEDVLGPFPCVRLRGLPFEATVDDVLRFFSGLVPLDVVMVTRADGRGAGEAIVVLTNVMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAVVGQLQAQ 99
            SLEDVLGPFPCVRLRGLPFEAT+DDVLRFF GLVPLDVVMVTRADGRGAGEAIVVL N+MEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAVVGQLQ+Q
Sbjct:   81 SLEDVLGPFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRADGRGAGEAIVVLPNLMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAVVGQLQSQ 179

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BLAST of mRNA_H-canaliculatus_F_contig15247.3905.1 vs. uniprot
Match: A0A836CJZ5_9STRA (RRM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ5_9STRA)

HSP 1 Score: 150 bits (380), Expect = 6.600e-44
Identity = 72/94 (76.60%), Postives = 81/94 (86.17%), Query Frame = 0

Query:    1 SLEDVLGPFPCVRLRGLPFEATVDDVLRFFSGLVPLDVVMVTRADGRGAGEAIVVLTNVMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAVVG 94
            +LE+VLGPFPCVRLRG+PFEATVDDVLRFF GL  +DVVM+ R DGRGAGEA+V+  N M++ MALSRDKQHMGRRYIEIFQSKR DYY A  G
Sbjct:   27 ALEEVLGPFPCVRLRGMPFEATVDDVLRFFQGLTVVDVVMILRGDGRGAGEALVLFANHMDLNMALSRDKQHMGRRYIEIFQSKRADYYHASQG 120

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BLAST of mRNA_H-canaliculatus_F_contig15247.3905.1 vs. uniprot
Match: A0A7S2V6E5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E5_9STRA)

HSP 1 Score: 140 bits (352), Expect = 6.480e-40
Identity = 64/91 (70.33%), Postives = 78/91 (85.71%), Query Frame = 0

Query:    2 LEDVLGPFPCVRLRGLPFEATVDDVLRFFSGLVPLDVVMVTRADGRGAGEAIVVLTNVMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAV 92
            LED+LGPFPCVR+RGLPFEAT++DV+ FF GLV LDVV+  R DGRG+GEA VV +N M+ QMAL RD+Q+MGRRYIE+FQ+KR DYY A+
Sbjct:   94 LEDILGPFPCVRIRGLPFEATMEDVIMFFQGLVVLDVVLAVRGDGRGSGEAFVVFSNPMDCQMALQRDRQNMGRRYIEVFQAKRGDYYQAI 184

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BLAST of mRNA_H-canaliculatus_F_contig15247.3905.1 vs. uniprot
Match: A0A7S4T0I6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T0I6_9STRA)

HSP 1 Score: 124 bits (312), Expect = 4.610e-33
Identity = 62/96 (64.58%), Postives = 74/96 (77.08%), Query Frame = 0

Query:    2 LEDVLGPFPCVRLRGLPFEATVDDVLRFFSGLVPLDVVMVT--RADGRGAGEAIVVLTNVMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAVVGQ 95
            LE VLGPFPC RLRGLPFEA+++DV+ FF GLV LD V+V    +DG G+GEA VV  N M+ QMAL RD  +MGRRYIE+FQ KR DYY+A+V Q
Sbjct:  107 LEVVLGPFPCARLRGLPFEASIEDVVVFFQGLVILDAVVVPSGNSDGMGSGEAFVVFANHMDFQMALQRDHHNMGRRYIEVFQGKRTDYYAAIVSQ 202

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BLAST of mRNA_H-canaliculatus_F_contig15247.3905.1 vs. uniprot
Match: A0A7S2A3T8_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A3T8_TRICV)

HSP 1 Score: 124 bits (311), Expect = 1.030e-32
Identity = 59/91 (64.84%), Postives = 73/91 (80.22%), Query Frame = 0

Query:    2 LEDVLGPFPCVRLRGLPFEATVDDVLRFFSGLVPLDVVMVTRADGRGAGEAIVVLTNVMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAV 92
            LE VLGPFPC RLRGLPF+A+++DVL FF GLV LDVV+V+ +  +G+GEA VV  N M+ QMAL RD+Q MG RYIE+FQ KR DYY+A+
Sbjct:  105 LEAVLGPFPCARLRGLPFDASLEDVLVFFQGLVVLDVVVVSDSSVKGSGEAFVVFANPMDFQMALQRDRQSMGHRYIEVFQGKRADYYAAI 195

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BLAST of mRNA_H-canaliculatus_F_contig15247.3905.1 vs. uniprot
Match: A0A7S2WJG1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WJG1_9STRA)

HSP 1 Score: 125 bits (313), Expect = 4.000e-32
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = 0

Query:    2 LEDVLGPFPCVRLRGLPFEATVDDVLRFFSGLVPLDVVMVTRADGRGAGEAIVVLTNVMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAV 92
            LE VLGPFPC RLRGLPF+A  +DVL FF GLV LDVV+V  + GRG+GEA VV  N M+ Q+AL RD+Q MG RYIE+FQ KR DYY+A+
Sbjct:  112 LEAVLGPFPCARLRGLPFDAMPEDVLAFFQGLVVLDVVVVANSFGRGSGEAFVVFPNPMDFQVALQRDRQSMGHRYIEVFQGKRSDYYAAI 202

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BLAST of mRNA_H-canaliculatus_F_contig15247.3905.1 vs. uniprot
Match: A0A7S4NBH0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NBH0_9STRA)

HSP 1 Score: 120 bits (301), Expect = 5.530e-32
Identity = 59/93 (63.44%), Postives = 73/93 (78.49%), Query Frame = 0

Query:    2 LEDVLGPFPCVRLRGLPFEATVDDVLRFFSGLVPLDVVMVTRADG--RGAGEAIVVLTNVMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAV 92
            LE VLG FPCVRLRGLP+ A+V+DVL FF GLV LD+V+V  AD   +G GEA V+L N M+ QMAL RD+Q+MG RYIE+FQ +R DYY+A+
Sbjct:  113 LEQVLGVFPCVRLRGLPYNASVEDVLIFFQGLVVLDIVVVASADDERKGTGEAFVILGNHMDFQMALQRDRQNMGHRYIEVFQGRRSDYYAAI 205

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BLAST of mRNA_H-canaliculatus_F_contig15247.3905.1 vs. uniprot
Match: A0A7R9WKK8_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WKK8_9STRA)

HSP 1 Score: 122 bits (305), Expect = 3.750e-31
Identity = 60/96 (62.50%), Postives = 74/96 (77.08%), Query Frame = 0

Query:    2 LEDVLGPFPCVRLRGLPFEATVDDVLRFFSGLVPLDVVMVTRADG--RGAGEAIVVLTNVMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAVVGQ 95
            LE VLG FPCVRLRGLP+ A+V+DVL FF GLV LD+V+V  AD   +G GEA V+L N M+ QMAL RD+Q+MG RYIE+FQ +R DYY+A+  Q
Sbjct:   95 LEQVLGVFPCVRLRGLPYNASVEDVLIFFQGLVVLDIVVVASADDERKGTGEAFVILGNHMDFQMALQRDRQNMGHRYIEVFQGRRSDYYAAIAAQ 190

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BLAST of mRNA_H-canaliculatus_F_contig15247.3905.1 vs. uniprot
Match: A0A7S4NCM0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NCM0_9STRA)

HSP 1 Score: 122 bits (305), Expect = 4.970e-31
Identity = 60/96 (62.50%), Postives = 74/96 (77.08%), Query Frame = 0

Query:    2 LEDVLGPFPCVRLRGLPFEATVDDVLRFFSGLVPLDVVMVTRADG--RGAGEAIVVLTNVMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAVVGQ 95
            LE VLG FPCVRLRGLP+ A+V+DVL FF GLV LD+V+V  AD   +G GEA V+L N M+ QMAL RD+Q+MG RYIE+FQ +R DYY+A+  Q
Sbjct:  113 LEQVLGVFPCVRLRGLPYNASVEDVLIFFQGLVVLDIVVVASADDERKGTGEAFVILGNHMDFQMALQRDRQNMGHRYIEVFQGRRSDYYAAIAAQ 208

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BLAST of mRNA_H-canaliculatus_F_contig15247.3905.1 vs. uniprot
Match: B8C3L7_THAPS (RRM domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3L7_THAPS)

HSP 1 Score: 120 bits (301), Expect = 1.460e-30
Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 0

Query:    2 LEDVLGPFPCVRLRGLPFEATVDDVLRFFSGLVPLDVVMVTRADGRGAGEAIVVLTNVMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAVVGQ 95
            LE +LGPFPCVR+RGLPFEAT++DVL FF GLV +DVV+V  A+   +GEA VV  N M+ QM L RD Q MGRRY+E+FQ KR DYY+A+  Q
Sbjct:   84 LEALLGPFPCVRVRGLPFEATLEDVLVFFQGLVVIDVVLVPHAE---SGEAFVVFANPMDFQMGLQRDHQSMGRRYLEVFQGKRSDYYAAIASQ 174

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_F_contig15247.3905.1 vs. uniprot

BLAST of mRNA_H-canaliculatus_F_contig15247.3905.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LML1_ECTSI	9.640e-58	94.95	Heterogeneous nuclear ribonucleoprotein, putative ...	[more]
A0A836CJZ5_9STRA	6.600e-44	76.60	RRM domain-containing protein (Fragment) n=1 Tax=T...	[more]
A0A7S2V6E5_9STRA	6.480e-40	70.33	Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa...	[more]
A0A7S4T0I6_9STRA	4.610e-33	64.58	Hypothetical protein (Fragment) n=2 Tax=Ditylum br...	[more]
A0A7S2A3T8_TRICV	1.030e-32	64.84	Hypothetical protein (Fragment) n=1 Tax=Trieres ch...	[more]
A0A7S2WJG1_9STRA	4.000e-32	65.93	Hypothetical protein n=1 Tax=Eucampia antarctica T...	[more]
A0A7S4NBH0_9STRA	5.530e-32	63.44	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]
A0A7R9WKK8_9STRA	3.750e-31	62.50	Hypothetical protein n=1 Tax=Pseudictyota dubia Ta...	[more]
A0A7S4NCM0_9STRA	4.970e-31	62.50	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]
B8C3L7_THAPS	1.460e-30	62.77	RRM domain-containing protein n=1 Tax=Thalassiosir...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 11..81 e-value: 0.0044 score: 26.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 8..95 e-value: 4.2E-23 score: 83.3
None	No IPR available	PANTHER	PTHR13976:SF71	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 8..96
None	No IPR available	PANTHER	PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	coord: 8..96
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..89

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_F_contig15247	contig	H-canaliculatus_F_contig15247:1002..2099 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90	2022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_F_contig15247.3905.1	mRNA_H-canaliculatus_F_contig15247.3905.1	Hapterophycus canaliculatus Oshoro5f female	mRNA	H-canaliculatus_F_contig15247 1002..2099 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-canaliculatus_F_contig15247.3905.1 ID=prot_H-canaliculatus_F_contig15247.3905.1|Name=mRNA_H-canaliculatus_F_contig15247.3905.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=99bp
SLEDVLGPFPCVRLRGLPFEATVDDVLRFFSGLVPLDVVMVTRADGRGAG
EAIVVLTNVMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAVVGQLQAQ

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom