mRNA_H-canaliculatus_F_contig15247.3905.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15247.3905.1
Unique NamemRNA_H-canaliculatus_F_contig15247.3905.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15247.3905.1 vs. uniprot
Match: D8LML1_ECTSI (Heterogeneous nuclear ribonucleoprotein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LML1_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 9.640e-58
Identity = 94/99 (94.95%), Postives = 97/99 (97.98%), Query Frame = 1 
Query:    1 SLEDVLGPFPCVRLRGLPFEATVDDVLRFFSGLVPLDVVMVTRADGRGAGEAIVVLTNVMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAVVGQLQAQ 297
            SLEDVLGPFPCVRLRGLPFEAT+DDVLRFF GLVPLDVVMVTRADGRGAGEAIVVL N+MEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAVVGQLQ+Q
Sbjct:   81 SLEDVLGPFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRADGRGAGEAIVVLPNLMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAVVGQLQSQ 179
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BLAST of mRNA_H-canaliculatus_F_contig15247.3905.1 vs. uniprot
Match: A0A836CJZ5_9STRA (RRM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ5_9STRA)

HSP 1 Score: 150 bits (380), Expect = 6.600e-44
Identity = 72/94 (76.60%), Postives = 81/94 (86.17%), Query Frame = 1 
Query:    1 SLEDVLGPFPCVRLRGLPFEATVDDVLRFFSGLVPLDVVMVTRADGRGAGEAIVVLTNVMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAVVG 282
            +LE+VLGPFPCVRLRG+PFEATVDDVLRFF GL  +DVVM+ R DGRGAGEA+V+  N M++ MALSRDKQHMGRRYIEIFQSKR DYY A  G
Sbjct:   27 ALEEVLGPFPCVRLRGMPFEATVDDVLRFFQGLTVVDVVMILRGDGRGAGEALVLFANHMDLNMALSRDKQHMGRRYIEIFQSKRADYYHASQG 120
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BLAST of mRNA_H-canaliculatus_F_contig15247.3905.1 vs. uniprot
Match: A0A7S2V6E5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E5_9STRA)

HSP 1 Score: 140 bits (352), Expect = 6.480e-40
Identity = 64/91 (70.33%), Postives = 78/91 (85.71%), Query Frame = 1 
Query:    4 LEDVLGPFPCVRLRGLPFEATVDDVLRFFSGLVPLDVVMVTRADGRGAGEAIVVLTNVMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAV 276
            LED+LGPFPCVR+RGLPFEAT++DV+ FF GLV LDVV+  R DGRG+GEA VV +N M+ QMAL RD+Q+MGRRYIE+FQ+KR DYY A+
Sbjct:   94 LEDILGPFPCVRIRGLPFEATMEDVIMFFQGLVVLDVVLAVRGDGRGSGEAFVVFSNPMDCQMALQRDRQNMGRRYIEVFQAKRGDYYQAI 184
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BLAST of mRNA_H-canaliculatus_F_contig15247.3905.1 vs. uniprot
Match: A0A7S4T0I6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T0I6_9STRA)

HSP 1 Score: 124 bits (312), Expect = 4.610e-33
Identity = 62/96 (64.58%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:    4 LEDVLGPFPCVRLRGLPFEATVDDVLRFFSGLVPLDVVMVT--RADGRGAGEAIVVLTNVMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAVVGQ 285
            LE VLGPFPC RLRGLPFEA+++DV+ FF GLV LD V+V    +DG G+GEA VV  N M+ QMAL RD  +MGRRYIE+FQ KR DYY+A+V Q
Sbjct:  107 LEVVLGPFPCARLRGLPFEASIEDVVVFFQGLVILDAVVVPSGNSDGMGSGEAFVVFANHMDFQMALQRDHHNMGRRYIEVFQGKRTDYYAAIVSQ 202
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BLAST of mRNA_H-canaliculatus_F_contig15247.3905.1 vs. uniprot
Match: A0A7S2A3T8_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A3T8_TRICV)

HSP 1 Score: 124 bits (311), Expect = 1.030e-32
Identity = 59/91 (64.84%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:    4 LEDVLGPFPCVRLRGLPFEATVDDVLRFFSGLVPLDVVMVTRADGRGAGEAIVVLTNVMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAV 276
            LE VLGPFPC RLRGLPF+A+++DVL FF GLV LDVV+V+ +  +G+GEA VV  N M+ QMAL RD+Q MG RYIE+FQ KR DYY+A+
Sbjct:  105 LEAVLGPFPCARLRGLPFDASLEDVLVFFQGLVVLDVVVVSDSSVKGSGEAFVVFANPMDFQMALQRDRQSMGHRYIEVFQGKRADYYAAI 195
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BLAST of mRNA_H-canaliculatus_F_contig15247.3905.1 vs. uniprot
Match: A0A7S2WJG1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WJG1_9STRA)

HSP 1 Score: 125 bits (313), Expect = 4.000e-32
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = 1 
Query:    4 LEDVLGPFPCVRLRGLPFEATVDDVLRFFSGLVPLDVVMVTRADGRGAGEAIVVLTNVMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAV 276
            LE VLGPFPC RLRGLPF+A  +DVL FF GLV LDVV+V  + GRG+GEA VV  N M+ Q+AL RD+Q MG RYIE+FQ KR DYY+A+
Sbjct:  112 LEAVLGPFPCARLRGLPFDAMPEDVLAFFQGLVVLDVVVVANSFGRGSGEAFVVFPNPMDFQVALQRDRQSMGHRYIEVFQGKRSDYYAAI 202
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BLAST of mRNA_H-canaliculatus_F_contig15247.3905.1 vs. uniprot
Match: A0A7S4NBH0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NBH0_9STRA)

HSP 1 Score: 120 bits (301), Expect = 5.530e-32
Identity = 59/93 (63.44%), Postives = 73/93 (78.49%), Query Frame = 1 
Query:    4 LEDVLGPFPCVRLRGLPFEATVDDVLRFFSGLVPLDVVMVTRADG--RGAGEAIVVLTNVMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAV 276
            LE VLG FPCVRLRGLP+ A+V+DVL FF GLV LD+V+V  AD   +G GEA V+L N M+ QMAL RD+Q+MG RYIE+FQ +R DYY+A+
Sbjct:  113 LEQVLGVFPCVRLRGLPYNASVEDVLIFFQGLVVLDIVVVASADDERKGTGEAFVILGNHMDFQMALQRDRQNMGHRYIEVFQGRRSDYYAAI 205
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BLAST of mRNA_H-canaliculatus_F_contig15247.3905.1 vs. uniprot
Match: A0A7R9WKK8_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WKK8_9STRA)

HSP 1 Score: 122 bits (305), Expect = 3.750e-31
Identity = 60/96 (62.50%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:    4 LEDVLGPFPCVRLRGLPFEATVDDVLRFFSGLVPLDVVMVTRADG--RGAGEAIVVLTNVMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAVVGQ 285
            LE VLG FPCVRLRGLP+ A+V+DVL FF GLV LD+V+V  AD   +G GEA V+L N M+ QMAL RD+Q+MG RYIE+FQ +R DYY+A+  Q
Sbjct:   95 LEQVLGVFPCVRLRGLPYNASVEDVLIFFQGLVVLDIVVVASADDERKGTGEAFVILGNHMDFQMALQRDRQNMGHRYIEVFQGRRSDYYAAIAAQ 190
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BLAST of mRNA_H-canaliculatus_F_contig15247.3905.1 vs. uniprot
Match: A0A7S4NCM0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NCM0_9STRA)

HSP 1 Score: 122 bits (305), Expect = 4.970e-31
Identity = 60/96 (62.50%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:    4 LEDVLGPFPCVRLRGLPFEATVDDVLRFFSGLVPLDVVMVTRADG--RGAGEAIVVLTNVMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAVVGQ 285
            LE VLG FPCVRLRGLP+ A+V+DVL FF GLV LD+V+V  AD   +G GEA V+L N M+ QMAL RD+Q+MG RYIE+FQ +R DYY+A+  Q
Sbjct:  113 LEQVLGVFPCVRLRGLPYNASVEDVLIFFQGLVVLDIVVVASADDERKGTGEAFVILGNHMDFQMALQRDRQNMGHRYIEVFQGRRSDYYAAIAAQ 208
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BLAST of mRNA_H-canaliculatus_F_contig15247.3905.1 vs. uniprot
Match: B8C3L7_THAPS (RRM domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3L7_THAPS)

HSP 1 Score: 120 bits (301), Expect = 1.460e-30
Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 1 
Query:    4 LEDVLGPFPCVRLRGLPFEATVDDVLRFFSGLVPLDVVMVTRADGRGAGEAIVVLTNVMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAVVGQ 285
            LE +LGPFPCVR+RGLPFEAT++DVL FF GLV +DVV+V  A+   +GEA VV  N M+ QM L RD Q MGRRY+E+FQ KR DYY+A+  Q
Sbjct:   84 LEALLGPFPCVRVRGLPFEATLEDVLVFFQGLVVIDVVLVPHAE---SGEAFVVFANPMDFQMGLQRDHQSMGRRYLEVFQGKRSDYYAAIASQ 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15247.3905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LML1_ECTSI9.640e-5894.95Heterogeneous nuclear ribonucleoprotein, putative ... [more]
A0A836CJZ5_9STRA6.600e-4476.60RRM domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S2V6E5_9STRA6.480e-4070.33Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa... [more]
A0A7S4T0I6_9STRA4.610e-3364.58Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A7S2A3T8_TRICV1.030e-3264.84Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2WJG1_9STRA4.000e-3265.93Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S4NBH0_9STRA5.530e-3263.44Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7R9WKK8_9STRA3.750e-3162.50Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S4NCM0_9STRA4.970e-3162.50Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
B8C3L7_THAPS1.460e-3062.77RRM domain-containing protein n=1 Tax=Thalassiosir... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15247contigH-canaliculatus_F_contig15247:1002..2099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.4
Seed ortholog evalue2e-46
Seed eggNOG ortholog2880.D8LML1
KEGG koko:K12898,ko:K14947
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0008150,GO:0010468,GO:0019219,GO:0019222,GO:0031323,GO:0043484,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363
EggNOG free text desc.regulation of RNA splicing
EggNOG OGsKOG1365@1,KOG1365@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Hectar predicted targeting categoryother localisation
Exons3
Model size297
Cds size297
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15247.3905.1prot_H-canaliculatus_F_contig15247.3905.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15247 1002..2099 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929262.9811654-CDS-H-canaliculatus_F_contig15247:1001..10711622929262.9811654-CDS-H-canaliculatus_F_contig15247:1001..1071Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15247 1002..1071 -
1696845741.378828-CDS-H-canaliculatus_F_contig15247:1001..10711696845741.378828-CDS-H-canaliculatus_F_contig15247:1001..1071Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15247 1002..1071 -
1622929262.9956045-CDS-H-canaliculatus_F_contig15247:1438..15711622929262.9956045-CDS-H-canaliculatus_F_contig15247:1438..1571Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15247 1439..1571 -
1696845741.393361-CDS-H-canaliculatus_F_contig15247:1438..15711696845741.393361-CDS-H-canaliculatus_F_contig15247:1438..1571Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15247 1439..1571 -
1622929263.0061147-CDS-H-canaliculatus_F_contig15247:2005..20991622929263.0061147-CDS-H-canaliculatus_F_contig15247:2005..2099Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15247 2006..2099 -
1696845741.4052851-CDS-H-canaliculatus_F_contig15247:2005..20991696845741.4052851-CDS-H-canaliculatus_F_contig15247:2005..2099Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15247 2006..2099 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15247.3905.1

>prot_H-canaliculatus_F_contig15247.3905.1 ID=prot_H-canaliculatus_F_contig15247.3905.1|Name=mRNA_H-canaliculatus_F_contig15247.3905.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=99bp
SLEDVLGPFPCVRLRGLPFEATVDDVLRFFSGLVPLDVVMVTRADGRGAG
EAIVVLTNVMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAVVGQLQAQ
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mRNA from alignment at H-canaliculatus_F_contig15247:1002..2099-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15247.3905.1 ID=mRNA_H-canaliculatus_F_contig15247.3905.1|Name=mRNA_H-canaliculatus_F_contig15247.3905.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1098bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15247:1002..2099- (Hapterophycus canaliculatus Oshoro5f female)
TCCTTGGAGGACGTTCTGGGGCCATTTCCTTGCGTGCGCCTGCGCGGCTT
GCCCTTCGAAGCCACCGTCGACGACGTGCTGCGCTTCTTCTCAGGTACGG
TGGTGTGGATTCCCGCGGCCGATCATGCTGGCTCCGCTCCTCCTGCTGCT
GCTCGTGCCATCCCACTACTGCTACTGCTGCTGCTGCTGCTGGTGCTACC
TCTGGCGGACGTTTGAGCGCCGCGACTATTTTGTTGCGAGTGGCGCCGCA
GGTTGCGCATCAAAACTCGCCCGCGGCTCGGTCAAACCGTCTGCGTCTGC
CTCTGCCTCTGTCTTGCCGCACCGTCGAACACTGCCCGCATAGGGGTTCA
TCGACTGTTAAGGTCCAGCGCTTTCTCGCGTGAGGCGATTATTTGTCTCG
CGTCTTGCTTGTGCTTGCGGATGGACTTGCGCCCCTCGTCATATGCCCGC
GGCGTGCCGTGCCACGCGACACGCTGTCTCTCCCGCGCTGTCGTTTCATG
CTGTGGTTTGCATTCCCATGGAACGCAGGGCTAGTCCCGTTGGACGTGGT
GATGGTGACAAGAGCCGACGGAAGGGGTGCGGGGGAGGCTATCGTGGTGC
TGACCAACGTCATGGAAATGCAGATGGCCTTGTCTAGGGACAAGCAGCAC
ATGGGCCGCAGGTGCGGTCACCGTTGGCGGGGGCGGCGGAGGCGTGTTGG
GTGGCGGTGTGTGTTGAGGAGGAGGCGTTCGGACGGGGGCAAGGGAACAT
ACTCGTCGGGGGGAGAATAGCAGCCAGCACGCTGAGAATTCCGCTGTTCA
TGGTGGGGATCGGTGCCCCACCGTCTAGATGCAGCAGGAGGTACATTGAA
CGTGTGAGGAGGTTTCCAAGTGCCGCGCCCAGACCGCCCATTTCGGCACG
CCGCCCATCTCGCGCCGTGCGCATTGCGCTTGGGTCTCCGGGAAAGGAGC
AGCGTCTTTCCTCGCCCACCACCTCCGCTCTTGTTATTTGTTATCGTTGC
CGTCTGGTTCGCGTCGGTCGCTTGTCAGGTACATCGAGATCTTCCAGTCG
AAGCGCATGGACTACTATTCGGCCGTGGTCGGGCAGCTCCAGGCGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15247:1002..2099-

>mRNA_H-canaliculatus_F_contig15247.3905.1 ID=mRNA_H-canaliculatus_F_contig15247.3905.1|Name=mRNA_H-canaliculatus_F_contig15247.3905.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=594bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15247:1002..2099- (Hapterophycus canaliculatus Oshoro5f female)
TCCTTGGAGGACGTTCTGGGGCCATTTCCTTGCGTGCGCCTGCGCGGCTT
GCCCTTCGAAGCCACCGTCGACGACGTGCTGCGCTTCTTCTCAGTCCTTG
GAGGACGTTCTGGGGCCATTTCCTTGCGTGCGCCTGCGCGGCTTGCCCTT
CGAAGCCACCGTCGACGACGTGCTGCGCTTCTTCTCAGGGCTAGTCCCGT
TGGACGTGGTGATGGTGACAAGAGCCGACGGAAGGGGTGCGGGGGAGGCT
ATCGTGGTGCTGACCAACGTCATGGAAATGCAGATGGCCTTGTCTAGGGA
CAAGCAGCACATGGGCCGCAGGGCTAGTCCCGTTGGACGTGGTGATGGTG
ACAAGAGCCGACGGAAGGGGTGCGGGGGAGGCTATCGTGGTGCTGACCAA
CGTCATGGAAATGCAGATGGCCTTGTCTAGGGACAAGCAGCACATGGGCC
GCAGGTACATCGAGATCTTCCAGTCGAAGCGCATGGACTACTATTCGGCC
GTGGTCGGGCAGCTCCAGGCGCAGGTACATCGAGATCTTCCAGTCGAAGC
GCATGGACTACTATTCGGCCGTGGTCGGGCAGCTCCAGGCGCAG
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