prot_H-canaliculatus_F_contig15229.3894.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig15229.3894.1
Unique Nameprot_H-canaliculatus_F_contig15229.3894.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length167
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15229.3894.1 vs. uniprot
Match: D8LKT0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT0_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 3.890e-84
Identity = 144/161 (89.44%), Postives = 149/161 (92.55%), Query Frame = 0 
Query:    8 SRASFEQAIDACVSHPDGLQHAGDLISRMKAVGHDLQADHYNVLIRGFGAARNLGAALNVFQTMREGVAVGGPGGGARARTLGWEVEEDMFAALVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEEVSKRLPYGASFGERDRPAGK-EEPRSQG 167
            SRASFEQAIDACVSHPDGLQHAGDLISRMK+VGHDLQADHYNVLIRGFG ARNLGAALNVFQTMREGVAVGGPGGGAR+RTLGWEVEEDMFAALVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEE    L Y   FGE+DR AGK +E RS+G
Sbjct:  653 SRASFEQAIDACVSHPDGLQHAGDLISRMKSVGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGARSRTLGWEVEEDMFAALVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEEFESEL-YDEIFGEKDRLAGKAKEQRSRG 812
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BLAST of mRNA_H-canaliculatus_F_contig15229.3894.1 vs. uniprot
Match: A0A6H5L195_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L195_9PHAE)

HSP 1 Score: 277 bits (709), Expect = 1.250e-83
Identity = 144/161 (89.44%), Postives = 149/161 (92.55%), Query Frame = 0 
Query:    8 SRASFEQAIDACVSHPDGLQHAGDLISRMKAVGHDLQADHYNVLIRGFGAARNLGAALNVFQTMREGVAVGGPGGGARARTLGWEVEEDMFAALVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEEVSKRLPYGASFGERDRPAGK-EEPRSQG 167
            SRASFEQAIDACVSHPDGLQHAGDLISRMK+VGHDLQADHYNVLIRGFG ARNLGAALNVFQTMREGVAVGGPGGGAR+RTLGWEVEEDMFAALVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEE    L Y   FGE+DR AGK +E RS+G
Sbjct:  840 SRASFEQAIDACVSHPDGLQHAGDLISRMKSVGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGARSRTLGWEVEEDMFAALVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEEFESEL-YDEIFGEKDRLAGKAKEQRSRG 999
[Close]
BLAST of mRNA_H-canaliculatus_F_contig15229.3894.1 vs. uniprot
Match: A0A6H5KDS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS3_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 7.330e-63
Identity = 99/105 (94.29%), Postives = 101/105 (96.19%), Query Frame = 0 
Query:    4 SNGE-SRASFEQAIDACVSHPDGLQHAGDLISRMKAVGHDLQADHYNVLIRGFGAARNLGAALNVFQTMREGVAVGGPGGGARARTLGWEVEEDMFAALVGACTR 107
            SNG   RASFEQAIDACVSHPDGLQHAGDLISRMK+VGHDLQADHYNVLIRGFG ARNLGAALNVFQTMREGVAVGGPGGGAR+RTLGWEVEEDMFAALVGACTR
Sbjct:    3 SNGSIHRASFEQAIDACVSHPDGLQHAGDLISRMKSVGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGARSRTLGWEVEEDMFAALVGACTR 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15229.3894.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKT0_ECTSI3.890e-8489.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L195_9PHAE1.250e-8389.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KDS3_9PHAE7.330e-6394.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 47..73
e-value: 0.0016
score: 18.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 48..73
e-value: 1.4E-4
score: 19.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 6..151
e-value: 1.7E-14
score: 55.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15229contigH-canaliculatus_F_contig15229:573..2378 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15229.3894.1mRNA_H-canaliculatus_F_contig15229.3894.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig15229 573..2378 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig15229.3894.1 ID=prot_H-canaliculatus_F_contig15229.3894.1|Name=mRNA_H-canaliculatus_F_contig15229.3894.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=167bp
SHRSNGESRASFEQAIDACVSHPDGLQHAGDLISRMKAVGHDLQADHYNV
LIRGFGAARNLGAALNVFQTMREGVAVGGPGGGARARTLGWEVEEDMFAA
LVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEEVSKRLPYGAS
FGERDRPAGKEEPRSQG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat