mRNA_H-canaliculatus_F_contig15229.3894.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15229.3894.1
Unique NamemRNA_H-canaliculatus_F_contig15229.3894.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15229.3894.1 vs. uniprot
Match: D8LKT0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT0_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 3.890e-84
Identity = 144/161 (89.44%), Postives = 149/161 (92.55%), Query Frame = 1 
Query:   22 SRASFEQAIDACVSHPDGLQHAGDLISRMKAVGHDLQADHYNVLIRGFGAARNLGAALNVFQTMREGVAVGGPGGGARARTLGWEVEEDMFAALVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEEVSKRLPYGASFGERDRPAGK-EEPRSQG 501
            SRASFEQAIDACVSHPDGLQHAGDLISRMK+VGHDLQADHYNVLIRGFG ARNLGAALNVFQTMREGVAVGGPGGGAR+RTLGWEVEEDMFAALVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEE    L Y   FGE+DR AGK +E RS+G
Sbjct:  653 SRASFEQAIDACVSHPDGLQHAGDLISRMKSVGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGARSRTLGWEVEEDMFAALVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEEFESEL-YDEIFGEKDRLAGKAKEQRSRG 812
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BLAST of mRNA_H-canaliculatus_F_contig15229.3894.1 vs. uniprot
Match: A0A6H5L195_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L195_9PHAE)

HSP 1 Score: 277 bits (709), Expect = 1.250e-83
Identity = 144/161 (89.44%), Postives = 149/161 (92.55%), Query Frame = 1 
Query:   22 SRASFEQAIDACVSHPDGLQHAGDLISRMKAVGHDLQADHYNVLIRGFGAARNLGAALNVFQTMREGVAVGGPGGGARARTLGWEVEEDMFAALVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEEVSKRLPYGASFGERDRPAGK-EEPRSQG 501
            SRASFEQAIDACVSHPDGLQHAGDLISRMK+VGHDLQADHYNVLIRGFG ARNLGAALNVFQTMREGVAVGGPGGGAR+RTLGWEVEEDMFAALVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEE    L Y   FGE+DR AGK +E RS+G
Sbjct:  840 SRASFEQAIDACVSHPDGLQHAGDLISRMKSVGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGARSRTLGWEVEEDMFAALVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEEFESEL-YDEIFGEKDRLAGKAKEQRSRG 999
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BLAST of mRNA_H-canaliculatus_F_contig15229.3894.1 vs. uniprot
Match: A0A6H5KDS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS3_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 7.330e-63
Identity = 99/105 (94.29%), Postives = 101/105 (96.19%), Query Frame = 1 
Query:   10 SNGE-SRASFEQAIDACVSHPDGLQHAGDLISRMKAVGHDLQADHYNVLIRGFGAARNLGAALNVFQTMREGVAVGGPGGGARARTLGWEVEEDMFAALVGACTR 321
            SNG   RASFEQAIDACVSHPDGLQHAGDLISRMK+VGHDLQADHYNVLIRGFG ARNLGAALNVFQTMREGVAVGGPGGGAR+RTLGWEVEEDMFAALVGACTR
Sbjct:    3 SNGSIHRASFEQAIDACVSHPDGLQHAGDLISRMKSVGHDLQADHYNVLIRGFGDARNLGAALNVFQTMREGVAVGGPGGGARSRTLGWEVEEDMFAALVGACTR 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15229.3894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKT0_ECTSI3.890e-8489.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L195_9PHAE1.250e-8389.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KDS3_9PHAE7.330e-6394.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15229contigH-canaliculatus_F_contig15229:573..2378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score280.4
Seed ortholog evalue5.4e-73
Seed eggNOG ortholog2880.D8LKT0
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size501
Cds size501
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15229.3894.1prot_H-canaliculatus_F_contig15229.3894.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15229 573..2378 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929261.8593156-CDS-H-canaliculatus_F_contig15229:572..7041622929261.8593156-CDS-H-canaliculatus_F_contig15229:572..704Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15229 573..704 +
1696845740.9398313-CDS-H-canaliculatus_F_contig15229:572..7041696845740.9398313-CDS-H-canaliculatus_F_contig15229:572..704Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15229 573..704 +
1622929261.8726578-CDS-H-canaliculatus_F_contig15229:1164..13551622929261.8726578-CDS-H-canaliculatus_F_contig15229:1164..1355Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15229 1165..1355 +
1696845740.9519303-CDS-H-canaliculatus_F_contig15229:1164..13551696845740.9519303-CDS-H-canaliculatus_F_contig15229:1164..1355Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15229 1165..1355 +
1622929261.8886933-CDS-H-canaliculatus_F_contig15229:1870..19821622929261.8886933-CDS-H-canaliculatus_F_contig15229:1870..1982Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15229 1871..1982 +
1696845740.9658592-CDS-H-canaliculatus_F_contig15229:1870..19821696845740.9658592-CDS-H-canaliculatus_F_contig15229:1870..1982Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15229 1871..1982 +
1622929261.9037833-CDS-H-canaliculatus_F_contig15229:2312..23781622929261.9037833-CDS-H-canaliculatus_F_contig15229:2312..2378Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15229 2313..2378 +
1696845740.9769475-CDS-H-canaliculatus_F_contig15229:2312..23781696845740.9769475-CDS-H-canaliculatus_F_contig15229:2312..2378Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15229 2313..2378 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15229.3894.1

>prot_H-canaliculatus_F_contig15229.3894.1 ID=prot_H-canaliculatus_F_contig15229.3894.1|Name=mRNA_H-canaliculatus_F_contig15229.3894.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=167bp
SHRSNGESRASFEQAIDACVSHPDGLQHAGDLISRMKAVGHDLQADHYNV
LIRGFGAARNLGAALNVFQTMREGVAVGGPGGGARARTLGWEVEEDMFAA
LVGACTRSGEAENVSEAIGFLRMNGVNPPSEILSYLQNEEVSKRLPYGAS
FGERDRPAGKEEPRSQG
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mRNA from alignment at H-canaliculatus_F_contig15229:573..2378+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15229.3894.1 ID=mRNA_H-canaliculatus_F_contig15229.3894.1|Name=mRNA_H-canaliculatus_F_contig15229.3894.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1806bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15229:573..2378+ (Hapterophycus canaliculatus Oshoro5f female)
TCGCACCGATCGAACGGCGAGAGCAGGGCCTCCTTCGAGCAGGCAATCGA
CGCTTGCGTGTCTCACCCGGACGGCCTGCAGCACGCGGGCGACCTCATTT
CCAGGATGAAAGCGGTCGGCCACGACCTGCAGGTGCGGATCGCGGCCAGC
CAGCAGCAGCAGGGGCACAACGTCGCCCCCCGACTTTCTTGTTTTGTTCT
CGTTGTTCTTTTCGCACCTCCTTATTTTTCTGAACACAAAAAGTCAACAA
CACCAAAGGAATATCTTGTGATACGCCGAGCCAAAATAATCGCGACTCAG
GAAGATTTTTGTTGAATTCCTCACGGTGAAGGCTCAGCATACCTACTGTT
GCAGGTGAAGAAAAAAGTACGGTGTCAGACGAGACGTTTTATGCGTATCA
GCGGAGACAGATGGAACGCTTCGTTGCAGGTGTGTCCGTGCCGCCGAGCA
AACAAAGAGCGAGCACGAGGCCCGAAATATGTGTATATGTATACATGGAA
CTCCCCCGTGCATTCGTATACAGCAACATTGACGCGAAAGAGTTGCCTTC
TGCAATCGACATGTTTCTCGCTTTTTTTTTTTAATGTGGCAGGCGGACCA
CTACAACGTTCTCATCCGGGGATTTGGAGCCGCGCGCAACCTCGGAGCGG
CGCTCAACGTCTTCCAGACCATGCGAGAGGGTGTGGCGGTGGGAGGCCCC
GGGGGTGGAGCACGGGCCCGCACGCTTGGCTGGGAGGTGGAGGAGGACAT
GTTCGCGGCCCTTGTAGGGGCGTGCACGAGGAGGTAGGCCCGTTTGTCTG
GTGGCTGATCCAGCTTCCTTTTCCGTCCCTTTGGTTCTCTTTTCGGAGAT
CGCCGTTCTTTTTGTCGCGTTTGTGCATACCCCATCGCCGGCACAGGCTA
TCATCCTCTCCTTGCTTTGTGGCGCACGTGTGAACAGCATCCATTCTGTC
GACTTTGTGTGGGATTGGCTGCACTGTTGGATGGTCGTCGGAAATGTGGG
CATGCTTCTCTCTCCCTGCCCTGCCCGCCCTGTCGTGTCTTTTTGTGGAG
GCGTCATGGTTCTCTCGCCAGCCCCGCCGAATCTGTCCTGTGCGCTGTCT
GCTTCTGCTTTGCTTCTTCCTCTATCCCCAACGATTAATTTTTATGGATT
TTTTGTCGCTGCTTCTCCGGTCGTACCTGTTGCCTCTGTCACTGCTGCCG
CCGCCGCTGCTGCTACGACCGCTGCTAAATGTTGCGTCTCTTTTCGGCGC
TGGTTTAACTCACGCACGGGTGCGTCTACTTGTACAACACACCTGCAGCG
GGGAAGCGGAGAACGTTTCCGAGGCCATCGGCTTCTTGCGGATGAACGGC
GTCAACCCTCCCAGCGAGATCCTCAGCTACTTGCAGAACGAAGAGGTGAG
CAAGCGCTTGGTTCGCGACCATTGCTTGGGGCTTGCGGTGAACGGGCCAT
GAAAATGGCGCCGCGAGGGATAGCCACGGTGACCCTGGTGACCCTGCCGA
CGGCGCTGACGATGGCGACGATGATTTTGATAATGTCGGTCAAGACCACG
ATAAGAGCGACCCCGCCCCCCCCCAAATAAGAAAAAACGCCAGTCCACAC
CCTCCCGGTTCCCCCCCCCTCCTGACACCCACGCCAACCTTACCCATCCG
CTCGACGCAATGCGCATGTGTACATTCCCACGCACCCACACCGCGACCGG
CATAACGGCACCCCCCCCCCCCCCCCCGTTCGCATCCGAGCCCTACGGCG
CGAGTTTCGGAGAACGGGACCGCCCCGCCGGCAAAGAGGAGCCGCGCTCC
CAGGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15229:573..2378+

>mRNA_H-canaliculatus_F_contig15229.3894.1 ID=mRNA_H-canaliculatus_F_contig15229.3894.1|Name=mRNA_H-canaliculatus_F_contig15229.3894.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1002bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15229:573..2378+ (Hapterophycus canaliculatus Oshoro5f female)
TCGCACCGATCGAACGGCGAGAGCAGGGCCTCCTTCGAGCAGGCAATCGA
CGCTTGCGTGTCTCACCCGGACGGCCTGCAGCACGCGGGCGACCTCATTT
CCAGGATGAAAGCGGTCGGCCACGACCTGCAGTCGCACCGATCGAACGGC
GAGAGCAGGGCCTCCTTCGAGCAGGCAATCGACGCTTGCGTGTCTCACCC
GGACGGCCTGCAGCACGCGGGCGACCTCATTTCCAGGATGAAAGCGGTCG
GCCACGACCTGCAGGCGGACCACTACAACGTTCTCATCCGGGGATTTGGA
GCCGCGCGCAACCTCGGAGCGGCGCTCAACGTCTTCCAGACCATGCGAGA
GGGTGTGGCGGTGGGAGGCCCCGGGGGTGGAGCACGGGCCCGCACGCTTG
GCTGGGAGGTGGAGGAGGACATGTTCGCGGCCCTTGTAGGGGCGTGCACG
AGGAGGCGGACCACTACAACGTTCTCATCCGGGGATTTGGAGCCGCGCGC
AACCTCGGAGCGGCGCTCAACGTCTTCCAGACCATGCGAGAGGGTGTGGC
GGTGGGAGGCCCCGGGGGTGGAGCACGGGCCCGCACGCTTGGCTGGGAGG
TGGAGGAGGACATGTTCGCGGCCCTTGTAGGGGCGTGCACGAGGAGCGGG
GAAGCGGAGAACGTTTCCGAGGCCATCGGCTTCTTGCGGATGAACGGCGT
CAACCCTCCCAGCGAGATCCTCAGCTACTTGCAGAACGAAGAGGTGAGCA
AGCGCTTGCGGGGAAGCGGAGAACGTTTCCGAGGCCATCGGCTTCTTGCG
GATGAACGGCGTCAACCCTCCCAGCGAGATCCTCAGCTACTTGCAGAACG
AAGAGGTGAGCAAGCGCTTGCCCTACGGCGCGAGTTTCGGAGAACGGGAC
CGCCCCGCCGGCAAAGAGGAGCCGCGCTCCCAGGGCCCCTACGGCGCGAG
TTTCGGAGAACGGGACCGCCCCGCCGGCAAAGAGGAGCCGCGCTCCCAGG
GC
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