mRNA_H-canaliculatus_F_contig14375.3424.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14375.3424.1
Unique NamemRNA_H-canaliculatus_F_contig14375.3424.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14375.3424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14375contigH-canaliculatus_F_contig14375:1734..2318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size585
Cds size495
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929192.0246167-UTR-H-canaliculatus_F_contig14375:1733..18231622929192.0246167-UTR-H-canaliculatus_F_contig14375:1733..1823Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14375 1734..1823 +
1696845711.524119-UTR-H-canaliculatus_F_contig14375:1733..18231696845711.524119-UTR-H-canaliculatus_F_contig14375:1733..1823Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14375 1734..1823 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929192.0393484-CDS-H-canaliculatus_F_contig14375:1823..23181622929192.0393484-CDS-H-canaliculatus_F_contig14375:1823..2318Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14375 1824..2318 +
1696845711.5328212-CDS-H-canaliculatus_F_contig14375:1823..23181696845711.5328212-CDS-H-canaliculatus_F_contig14375:1823..2318Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14375 1824..2318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14375.3424.1prot_H-canaliculatus_F_contig14375.3424.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14375 1824..2318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14375.3424.1

>prot_H-canaliculatus_F_contig14375.3424.1 ID=prot_H-canaliculatus_F_contig14375.3424.1|Name=mRNA_H-canaliculatus_F_contig14375.3424.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=165bp
MAKAIVSVARQGVPRDPATATAARDRVDALGRAFHDVLQLLEQHARDHCA
AIQLLRNRSLFSGLLDKDTKVWARAVTTLFDSLARTAPLLPSMILPASPL
PCFPHFRANLNGGGLINASAVHAVPTSQPSPRSDRGDRGDRCGRMCRQWL
RDGTCRFESRCTFQH
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mRNA from alignment at H-canaliculatus_F_contig14375:1734..2318+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14375.3424.1 ID=mRNA_H-canaliculatus_F_contig14375.3424.1|Name=mRNA_H-canaliculatus_F_contig14375.3424.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=585bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14375:1734..2318+ (Hapterophycus canaliculatus Oshoro5f female)
CTCCTGAAGTTACGGGACTTTTTCCTGACCGACTACGGGCTGCGCGGGGG
ATGAGGCAGCCAGCTCGAGGCGGTGGCCCACTTCCGGCTGATGGCCAAAG
CCATCGTCTCCGTCGCGCGGCAGGGTGTGCCGCGCGATCCGGCGACGGCG
ACAGCGGCACGCGACCGCGTTGACGCGTTGGGCAGAGCGTTCCACGACGT
GCTTCAGCTGCTGGAGCAGCACGCACGGGACCACTGCGCGGCGATCCAGC
TGCTGCGGAACCGCTCCCTCTTCTCGGGCCTTCTCGACAAGGACACGAAG
GTATGGGCACGGGCGGTCACCACCCTGTTCGACTCCCTCGCCCGCACGGC
ACCTCTTCTGCCCAGCATGATACTGCCCGCTTCACCACTGCCGTGTTTCC
CCCACTTCCGGGCAAACCTGAACGGGGGCGGCCTTATCAACGCCAGCGCG
GTGCACGCCGTCCCCACCTCGCAGCCGTCACCACGGAGCGACCGGGGCGA
TCGGGGCGACCGGTGTGGCCGGATGTGCCGTCAGTGGCTGCGCGACGGAA
CATGCCGTTTCGAATCGCGTTGCACCTTCCAGCAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14375:1734..2318+

>mRNA_H-canaliculatus_F_contig14375.3424.1 ID=mRNA_H-canaliculatus_F_contig14375.3424.1|Name=mRNA_H-canaliculatus_F_contig14375.3424.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=990bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14375:1734..2318+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCAAAGCCATCGTCTCCGTCGCGCGGCAGGGTGTGCCGCGCGATCC
GGCGACGGCGACAGCGGCACGCGACCGCGTTGACGCGTTGGGCAGAGCGT
TCCACGACGTGCTTCAGCTGCTGGAGCAGCACGCACGGGACCACTGCGCG
GCGATCCAGCTGCTGCGGAACCGCTCCCTCTTCTCGGGCCTTCTCGACAA
GGACACGAAGGTATGGGCACGGGCGGTCACCACCCTGTTCGACTCCCTCG
CCCGCACGGCACCTCTTCTGCCCAGCATGATACTGCCCGCTTCACCACTG
CCGTGTTTCCCCCACTTCCGGGCAAACCTGAACGGGGGCGGCCTTATCAA
CGCCAGCGCGGTGCACGCCGTCCCCACCTCGCAGCCGTCACCACGGAGCG
ACCGGGGCGATCGGGGCGACCGGTGTGGCCGGATGTGCCGTCAGTGGCTG
CGCGACGGAACATGCCGTTTCGAATCGCGTTGCACCTTCCAGCACATGGC
CAAAGCCATCGTCTCCGTCGCGCGGCAGGGTGTGCCGCGCGATCCGGCGA
CGGCGACAGCGGCACGCGACCGCGTTGACGCGTTGGGCAGAGCGTTCCAC
GACGTGCTTCAGCTGCTGGAGCAGCACGCACGGGACCACTGCGCGGCGAT
CCAGCTGCTGCGGAACCGCTCCCTCTTCTCGGGCCTTCTCGACAAGGACA
CGAAGGTATGGGCACGGGCGGTCACCACCCTGTTCGACTCCCTCGCCCGC
ACGGCACCTCTTCTGCCCAGCATGATACTGCCCGCTTCACCACTGCCGTG
TTTCCCCCACTTCCGGGCAAACCTGAACGGGGGCGGCCTTATCAACGCCA
GCGCGGTGCACGCCGTCCCCACCTCGCAGCCGTCACCACGGAGCGACCGG
GGCGATCGGGGCGACCGGTGTGGCCGGATGTGCCGTCAGTGGCTGCGCGA
CGGAACATGCCGTTTCGAATCGCGTTGCACCTTCCAGCAC
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