mRNA_H-canaliculatus_F_contig1429.3366.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1429.3366.1
Unique NamemRNA_H-canaliculatus_F_contig1429.3366.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1429.3366.1 vs. uniprot
Match: D7FK74_ECTSI (Similar to ubiquitin specific protease 34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK74_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 4.980e-20
Identity = 42/58 (72.41%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:  166 MSMAVFEDDRWLNLMSAGRMQELLPVIDRIRTAMVDATFNSSSVDERARHHFMTHTLP 339
            M+M +F+DDRWL+LMS GRMQ+LLP+IDRI+ AMV +TFNSS+ +ERARHHF THTLP
Sbjct:    1 MNMTIFDDDRWLHLMSVGRMQQLLPIIDRIQAAMVASTFNSSADNERARHHFATHTLP 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1429.3366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK74_ECTSI4.980e-2072.41Similar to ubiquitin specific protease 34 n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1429contigH-canaliculatus_F_contig1429:21327..21771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionsimilar to ubiquitin specific protease 34
Ec32 orthologEc-17_003020.1
Hectar predicted targeting categoryother localisation
Exons1
Model size445
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929177.405027-CDS-H-canaliculatus_F_contig1429:21326..216711622929177.405027-CDS-H-canaliculatus_F_contig1429:21326..21671Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1429 21327..21671 +
1696845707.8098342-CDS-H-canaliculatus_F_contig1429:21326..216711696845707.8098342-CDS-H-canaliculatus_F_contig1429:21326..21671Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1429 21327..21671 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929177.5182877-UTR-H-canaliculatus_F_contig1429:21671..217711622929177.5182877-UTR-H-canaliculatus_F_contig1429:21671..21771Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1429 21672..21771 +
1696845707.819819-UTR-H-canaliculatus_F_contig1429:21671..217711696845707.819819-UTR-H-canaliculatus_F_contig1429:21671..21771Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1429 21672..21771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1429.3366.1prot_H-canaliculatus_F_contig1429.3366.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1429 21327..21671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1429.3366.1

>prot_H-canaliculatus_F_contig1429.3366.1 ID=prot_H-canaliculatus_F_contig1429.3366.1|Name=mRNA_H-canaliculatus_F_contig1429.3366.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=115bp
ARQIRKVVSNRGRTKRPRARSILRRVHPSRAPWLQALPAYAGGILRRRSR
RGWQEMSMAVFEDDRWLNLMSAGRMQELLPVIDRIRTAMVDATFNSSSVD
ERARHHFMTHTLPW*
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mRNA from alignment at H-canaliculatus_F_contig1429:21327..21771+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1429.3366.1 ID=mRNA_H-canaliculatus_F_contig1429.3366.1|Name=mRNA_H-canaliculatus_F_contig1429.3366.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=445bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1429:21327..21771+ (Hapterophycus canaliculatus Oshoro5f female)
GCAAGGCAGATACGCAAGGTTGTTTCAAATCGAGGACGTACAAAGAGACC
TAGAGCCAGATCAATTTTACGCAGAGTTCATCCATCCAGGGCACCTTGGC
TGCAGGCGCTGCCTGCGTACGCTGGTGGGATACTTCGCCGGAGGAGCAGA
AGGGGGTGGCAGGAGATGAGCATGGCGGTATTCGAGGATGATCGATGGCT
GAACCTCATGTCCGCGGGTCGAATGCAGGAGCTCCTCCCCGTCATCGATC
GAATCCGGACGGCAATGGTCGACGCTACCTTCAACAGCAGCAGTGTCGAC
GAGAGGGCTCGGCATCATTTCATGACGCACACGCTGCCATGGTGAGTACG
ATCCCGGTCACTTTCGCCGAGCGAGAGCGATCCCGCGAGCTTTCATTTTG
CTCAATTGGGACGTTCGTTTTCGTCGAGGATTAGATCGCGGCGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1429:21327..21771+

>mRNA_H-canaliculatus_F_contig1429.3366.1 ID=mRNA_H-canaliculatus_F_contig1429.3366.1|Name=mRNA_H-canaliculatus_F_contig1429.3366.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=690bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1429:21327..21771+ (Hapterophycus canaliculatus Oshoro5f female)
GCAAGGCAGATACGCAAGGTTGTTTCAAATCGAGGACGTACAAAGAGACC
TAGAGCCAGATCAATTTTACGCAGAGTTCATCCATCCAGGGCACCTTGGC
TGCAGGCGCTGCCTGCGTACGCTGGTGGGATACTTCGCCGGAGGAGCAGA
AGGGGGTGGCAGGAGATGAGCATGGCGGTATTCGAGGATGATCGATGGCT
GAACCTCATGTCCGCGGGTCGAATGCAGGAGCTCCTCCCCGTCATCGATC
GAATCCGGACGGCAATGGTCGACGCTACCTTCAACAGCAGCAGTGTCGAC
GAGAGGGCTCGGCATCATTTCATGACGCACACGCTGCCATGGTGAGCAAG
GCAGATACGCAAGGTTGTTTCAAATCGAGGACGTACAAAGAGACCTAGAG
CCAGATCAATTTTACGCAGAGTTCATCCATCCAGGGCACCTTGGCTGCAG
GCGCTGCCTGCGTACGCTGGTGGGATACTTCGCCGGAGGAGCAGAAGGGG
GTGGCAGGAGATGAGCATGGCGGTATTCGAGGATGATCGATGGCTGAACC
TCATGTCCGCGGGTCGAATGCAGGAGCTCCTCCCCGTCATCGATCGAATC
CGGACGGCAATGGTCGACGCTACCTTCAACAGCAGCAGTGTCGACGAGAG
GGCTCGGCATCATTTCATGACGCACACGCTGCCATGGTGA
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