mRNA_H-canaliculatus_F_contig14246.3337.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14246.3337.1
Unique NamemRNA_H-canaliculatus_F_contig14246.3337.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig14246.3337.1 vs. uniprot
Match: D8LIM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIM0_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 7.440e-26
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 1
Query:   70 LRMAGLEVDKLYSLDRRHVLLKIRLPRSKLEEVAEVMRLKVRRRDGTIGRFKKDHRSSF 246
            +RMAGLEVDKLYSLDRRHVLLKIRLPR KLEEVAEVMRLKVRRRDGTIGRFKKDHRSSF
Sbjct:    1 MRMAGLEVDKLYSLDRRHVLLKIRLPRIKLEEVAEVMRLKVRRRDGTIGRFKKDHRSSF 59          
BLAST of mRNA_H-canaliculatus_F_contig14246.3337.1 vs. uniprot
Match: A0A1Z5KN45_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KN45_FISSO)

HSP 1 Score: 89.0 bits (219), Expect = 8.050e-19
Identity = 41/72 (56.94%), Postives = 57/72 (79.17%), Query Frame = 1
Query:   16 PPEFFLGWTSPGTQIWSRLRMAGLEVDKLYSLDRRHVLLKIRLPRSKLEEVAEVMRLKVRRRDGTIGRFKKD 231
            P ++FLG+ SPGT IWSRLR AGLE  ++Y+LDRR V++KIR P  +L +VAEV+RLK++ RDG+   F++D
Sbjct:  870 PSDYFLGFRSPGTSIWSRLRQAGLETQRVYALDRRSVMIKIRCPNDRLMDVAEVLRLKLKTRDGSFAPFRED 941          
BLAST of mRNA_H-canaliculatus_F_contig14246.3337.1 vs. uniprot
Match: A0A7S3QEB7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QEB7_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.510e-18
Identity = 43/79 (54.43%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   13 APP-EFFLGWTSPGTQIWSRLRMAGLEVDKLYSLDRRHVLLKIRLPRSKLEEVAEVMRLKVRRRDGTIGRFKKDHRSSF 246
            APP +FFLG+ SPGTQIW RLR AGLE D++Y+LD R V++K+R P  +L +VAEV+RLK++  DG    F++D   +F
Sbjct: 1172 APPSDFFLGFRSPGTQIWGRLRQAGLETDRIYALDTRRVMIKVRCPADRLMDVAEVLRLKMKTNDGYYATFREDMIEAF 1250          
BLAST of mRNA_H-canaliculatus_F_contig14246.3337.1 vs. uniprot
Match: A0A7S1TPM3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPM3_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.310e-17
Identity = 37/76 (48.68%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   19 PEFFLGWTSPGTQIWSRLRMAGLEVDKLYSLDRRHVLLKIRLPRSKLEEVAEVMRLKVRRRDGTIGRFKKDHRSSF 246
            P FFLGWT+PGTQIW+RLRMAGL V +++ ++ + V+LKI +P+++LE+VAE M +K+ ++ G   RF+   +  F
Sbjct:   28 PNFFLGWTAPGTQIWARLRMAGLIVKRIFDINTQVVILKITIPQTRLEQVAEAMHVKILKKGGGWDRFRVAKKDDF 103          
BLAST of mRNA_H-canaliculatus_F_contig14246.3337.1 vs. uniprot
Match: A0A7S4HJC6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HJC6_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.310e-17
Identity = 40/77 (51.95%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   16 PPEFFLGWTSPGTQIWSRLRMAGLEVDKLYSLDRRHVLLKIRLPRSKLEEVAEVMRLKVRRRDGTIGRFKKDHRSSF 246
            P ++FLG+ S GTQIWSRLR AGLE  ++Y+LD R V++K+R P  +L +VAEV+RLK++ RDGT   F++     F
Sbjct:  593 PSDYFLGFKSSGTQIWSRLRQAGLETQRIYALDSRRVMIKVRCPADRLMDVAEVLRLKLKTRDGTYTAFRESIMHQF 669          
BLAST of mRNA_H-canaliculatus_F_contig14246.3337.1 vs. uniprot
Match: K0TEN3_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEN3_THAOC)

HSP 1 Score: 83.2 bits (204), Expect = 8.620e-17
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    1 VMGGAPPEFFLGWTSPGTQIWSRLRMAGLEVDKLYSLDRRHVLLKIRLPRSKLEEVAEVMRLKVRRRDGTIGRFKKDHRSSF 246
            V+   P ++FLG+ SPGTQIWSRLR AGLE  ++Y+LD R V+LK+R P  +LE+VAE ++LK++ + G    F++D  + F
Sbjct:  694 VIQAPPSDYFLGYGSPGTQIWSRLRSAGLETQRVYALDTRRVMLKVRCPVDRLEDVAEALKLKLKTKSGDYVPFREDLITEF 775          
BLAST of mRNA_H-canaliculatus_F_contig14246.3337.1 vs. uniprot
Match: A0A7S2JXK3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JXK3_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.580e-16
Identity = 38/77 (49.35%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   16 PPEFFLGWTSPGTQIWSRLRMAGLEVDKLYSLDRRHVLLKIRLPRSKLEEVAEVMRLKVRRRDGTIGRFKKDHRSSF 246
            P ++FLG++S GT+IW+RLR AGLE  ++Y LDR+ V+L +R P  +L++VAEV+RLK+R +DG    F++ H   F
Sbjct:  516 PSDYFLGFSSAGTKIWARLRQAGLETQRVYGLDRKRVMLLVRCPEDRLQDVAEVIRLKLRTKDGLFLPFRETHSHIF 592          
BLAST of mRNA_H-canaliculatus_F_contig14246.3337.1 vs. uniprot
Match: A0A7S2EGT0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EGT0_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.190e-16
Identity = 38/77 (49.35%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   16 PPEFFLGWTSPGTQIWSRLRMAGLEVDKLYSLDRRHVLLKIRLPRSKLEEVAEVMRLKVRRRDGTIGRFKKDHRSSF 246
            P ++FLG+ S GTQIWSRLR AGLE  ++Y+LD++ V++K+R P  +L +VAEV+RLK++ RDG    F++   S +
Sbjct:  776 PSDYFLGFKSSGTQIWSRLRQAGLETTRIYALDKKRVMIKLRCPPERLMDVAEVLRLKLKTRDGVYAPFRESMISQY 852          
BLAST of mRNA_H-canaliculatus_F_contig14246.3337.1 vs. uniprot
Match: B7G9W7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G9W7_PHATC)

HSP 1 Score: 80.9 bits (198), Expect = 5.590e-16
Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 1
Query:    1 VMGGA---PPEFFLGWTSPGTQIWSRLRMAGLEVDKLYSLDRRHVLLKIRLPRSKLEEVAEVMRLKVRRRDGTIGRFKKDHRSSF 246
             M GA   P ++FLG+ S GT IWSRLR AGLE  ++YSLD R VL+K+R P  +L +VAEV++LK+R  +G    F++D    F
Sbjct:  833 TMAGALPPPSDYFLGFKSAGTSIWSRLRQAGLETQRVYSLDPRRVLIKVRCPSDRLMDVAEVLKLKLRSSEGGFAPFREDMMDMF 917          
BLAST of mRNA_H-canaliculatus_F_contig14246.3337.1 vs. uniprot
Match: A0A482RUE1_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUE1_9ARCH)

HSP 1 Score: 78.2 bits (191), Expect = 4.930e-15
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   10 GAPPEF----FLGWTSPGTQIWSRLRMAGLEVDKLYSLDRRHVLLKIRLPRSKLEEVAEVMRLKVRRRDGTIGRFKKDHRSSF 246
            GAPP      FLGW S GTQIW+RL++AGL+V  +YS D   V+LK++ P  +LE++AE MR+K++ R G +  F+   R SF
Sbjct:  195 GAPPSLPIAQFLGWNSAGTQIWARLKLAGLDVKVVYSYDLYRVILKLKCPAWRLEQMAEQMRIKIKTRGGYMKPFRVSRRDSF 277          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14246.3337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LIM0_ECTSI7.440e-2696.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Z5KN45_FISSO8.050e-1956.94Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S3QEB7_9STRA1.510e-1854.43Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1TPM3_9STRA1.310e-1748.68Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S4HJC6_9STRA3.310e-1751.95Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
K0TEN3_THAOC8.620e-1748.78Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S2JXK3_9STRA1.580e-1649.35Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S2EGT0_9STRA2.190e-1649.35Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
B7G9W7_PHATC5.590e-1649.41Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A482RUE1_9ARCH4.930e-1548.19Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14246contigH-canaliculatus_F_contig14246:1226..2000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue2.8e-22
Seed eggNOG ortholog2880.D8LIM0
EggNOG free text desc.intracellular chloride channel activity
EggNOG OGsKOG2513@1,KOG2513@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size243
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14246.3337.1prot_H-canaliculatus_F_contig14246.3337.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14246 1226..1997 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929174.0827796-CDS-H-canaliculatus_F_contig14246:1225..13061622929174.0827796-CDS-H-canaliculatus_F_contig14246:1225..1306Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14246 1226..1306 -
1696845706.3365357-CDS-H-canaliculatus_F_contig14246:1225..13061696845706.3365357-CDS-H-canaliculatus_F_contig14246:1225..1306Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14246 1226..1306 -
1622929174.0943894-CDS-H-canaliculatus_F_contig14246:1835..19971622929174.0943894-CDS-H-canaliculatus_F_contig14246:1835..1997Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14246 1836..1997 -
1696845706.3503222-CDS-H-canaliculatus_F_contig14246:1835..19971696845706.3503222-CDS-H-canaliculatus_F_contig14246:1835..1997Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14246 1836..1997 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929174.1066363-UTR-H-canaliculatus_F_contig14246:1997..20001622929174.1066363-UTR-H-canaliculatus_F_contig14246:1997..2000Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14246 1998..2000 -
1696845706.3590014-UTR-H-canaliculatus_F_contig14246:1997..20001696845706.3590014-UTR-H-canaliculatus_F_contig14246:1997..2000Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14246 1998..2000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14246.3337.1

>prot_H-canaliculatus_F_contig14246.3337.1 ID=prot_H-canaliculatus_F_contig14246.3337.1|Name=mRNA_H-canaliculatus_F_contig14246.3337.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=81bp
MGGAPPEFFLGWTSPGTQIWSRLRMAGLEVDKLYSLDRRHVLLKIRLPRS
KLEEVAEVMRLKVRRRDGTIGRFKKDHRSSF
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mRNA from alignment at H-canaliculatus_F_contig14246:1226..2000-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14246.3337.1 ID=mRNA_H-canaliculatus_F_contig14246.3337.1|Name=mRNA_H-canaliculatus_F_contig14246.3337.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=775bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14246:1226..2000- (Hapterophycus canaliculatus Oshoro5f female)
GTCATGGGCGGCGCCCCTCCGGAGTTTTTCCTGGGGTGGACGAGCCCCGG GACTCAGATCTGGTCGAGGCTGCGCATGGCCGGGCTCGAGGTTGACAAGC TGTACAGCCTCGACAGGAGGCACGTGCTGCTCAAGATCAGGCTCCCGAGG AGCAAGCTAGAAGAGGTGATGGTGCTCCTGCCGCAAGGTCCATTTAGGGA CGACGCGAATGTCGGCGCAGGGGTTCCGCCGATTACGTAGACGACAGGAA GGGGTGGCGGGGGGTTTCTCACTGATGCCGATGGTGGAGGGGCAGCACAG AAGACAGGATCGACGATACCACGCTTGCGTCTCCGTTCCGTTGGCCCCCC CCCAAAAAATGTACTTTACGCCGTCCTTTGTCGCGCCCCACGGTTTGTCG CGATTCGGAAGACACGGGCGCGGCTCGCAGCAGCCGGCTGGAGGGGGTGT GACGCAAGTGAACGTACCGGGAGTCAAATCTAATCACTGGGGTGATGTAG CTCCGATGGTTCGGGCGCTCCCTAGGAGGCCGTGCGTATTTTTCGATTCA AGTGGTTCTTTCTTTTCTTGATCCCAACTAGGAAAAATAGCAACCACCAT CACAACAACAGCAAAAATAAAAACAGCAGCAACAACAATAGTAACAACGA CAACAACAACAACGACAAAGATATCGATCGACGGCAACCAACAGGTGGCC GAAGTTATGCGGCTCAAGGTCAGGAGGCGCGACGGAACGATCGGGCGTTT CAAGAAAGACCACCGAAGCTCCTTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14246:1226..2000-

>mRNA_H-canaliculatus_F_contig14246.3337.1 ID=mRNA_H-canaliculatus_F_contig14246.3337.1|Name=mRNA_H-canaliculatus_F_contig14246.3337.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=486bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14246:1226..2000- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCGGCGCCCCTCCGGAGTTTTTCCTGGGGTGGACGAGCCCCGGGAC
TCAGATCTGGTCGAGGCTGCGCATGGCCGGGCTCGAGGTTGACAAGCTGT
ACAGCCTCGACAGGAGGCACGTGCTGCTCAAGATCAGGCTCCCGAGGAGC
AAGCTAGAAGAGATGGGCGGCGCCCCTCCGGAGTTTTTCCTGGGGTGGAC
GAGCCCCGGGACTCAGATCTGGTCGAGGCTGCGCATGGCCGGGCTCGAGG
TTGACAAGCTGTACAGCCTCGACAGGAGGCACGTGCTGCTCAAGATCAGG
CTCCCGAGGAGCAAGCTAGAAGAGGTGGCCGAAGTTATGCGGCTCAAGGT
CAGGAGGCGCGACGGAACGATCGGGCGTTTCAAGAAAGACCACCGAAGCT
CCTTCGTGGCCGAAGTTATGCGGCTCAAGGTCAGGAGGCGCGACGGAACG
ATCGGGCGTTTCAAGAAAGACCACCGAAGCTCCTTC
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