mRNA_H-canaliculatus_F_contig14149.3268.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14149.3268.1
Unique NamemRNA_H-canaliculatus_F_contig14149.3268.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig14149.3268.1 vs. uniprot
Match: A0A6H5KUG3_9PHAE (Mitochondrial inner membrane protease subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUG3_9PHAE)

HSP 1 Score: 361 bits (926), Expect = 1.170e-125
Identity = 172/183 (93.99%), Postives = 176/183 (96.17%), Query Frame = 1
Query:    1 GIQEWWEREGKSDVKIYATSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLSNKLSRPYQRKDVVVFYPPPKFSEFSNRGKGDALIKRVIAVGGDNVQIKDGSLFVNGQEQFEDYTFEEPEYRWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRVGAIET 549
            GIQEWWER+GKSD+KIY TSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLS+KLSRPYQRKDVVVFYPPPKF EFS+RGK DALIKRVIAVGGD VQIKDGSLFVNGQEQFEDYTFEEPEY WGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWR G IET
Sbjct:   29 GIQEWWERDGKSDLKIYGTSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFREFSDRGKKDALIKRVIAVGGDVVQIKDGSLFVNGQEQFEDYTFEEPEYSWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRAGTIET 211          
BLAST of mRNA_H-canaliculatus_F_contig14149.3268.1 vs. uniprot
Match: D8LS42_ECTSI (Mitochondrial inner membrane protease subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS42_ECTSI)

HSP 1 Score: 361 bits (927), Expect = 1.070e-124
Identity = 172/183 (93.99%), Postives = 176/183 (96.17%), Query Frame = 1
Query:    1 GIQEWWEREGKSDVKIYATSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLSNKLSRPYQRKDVVVFYPPPKFSEFSNRGKGDALIKRVIAVGGDNVQIKDGSLFVNGQEQFEDYTFEEPEYRWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRVGAIET 549
            GIQEWWER+GKSD+KIY TSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLS+KLSRPYQRKDVVVFYPPPKF EFS+RGK DALIKRVIAVGGD VQIKDGSLFVNGQEQFEDYTFEEPEY WGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWR G IET
Sbjct:  102 GIQEWWERDGKSDLKIYGTSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFREFSDRGKKDALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYSWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRAGTIET 284          
BLAST of mRNA_H-canaliculatus_F_contig14149.3268.1 vs. uniprot
Match: A0A6T5N089_HETAK (Mitochondrial inner membrane protease subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5N089_HETAK)

HSP 1 Score: 261 bits (668), Expect = 1.700e-85
Identity = 126/185 (68.11%), Postives = 154/185 (83.24%), Query Frame = 1
Query:    1 GIQEWWE-REGKSDVKIYATSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLSNKLSRPYQRKDVVVFYPPPKFSEFSNRGKGDALIKRVIAVGGDNVQIKDGS-LFVNGQEQFEDYTFEEPEYRWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRVGAIET 549
            G+  W +  EGK D++IY TSLA+ALV+R+  +EPR+IPSLSM+PTF+IGDQLAVDKLS K++RPYQR+DVVVF PP  FS FS+R +G+ALIKRV+AV GD V+IKDG  LF+NG++Q E YT E+  Y WGPQTVP+G V+VLGDNRNHSLD H+WGFLPTEN+IGRA+FKYWPPWR G I  
Sbjct:   88 GLINWAQSEEGKEDLRIYGTSLAVALVLRTFVVEPRWIPSLSMYPTFDIGDQLAVDKLS-KVARPYQRRDVVVFTPPDAFSIFSDR-RGEALIKRVVAVAGDVVEIKDGGHLFINGEKQEEKYTNEDALYEWGPQTVPKGCVLVLGDNRNHSLDGHVWGFLPTENIIGRAVFKYWPPWRAGGIAV 270          
BLAST of mRNA_H-canaliculatus_F_contig14149.3268.1 vs. uniprot
Match: A0A7S2S8J5_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8J5_9STRA)

HSP 1 Score: 238 bits (606), Expect = 3.710e-76
Identity = 118/184 (64.13%), Postives = 143/184 (77.72%), Query Frame = 1
Query:    7 QEWWEREG-KSDVKIYATSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLSNKLSRPYQRKDVVVFYPPPKFSEFSNRG-KGDALIKRVIAVGGDNVQIKDG-SLFVNGQEQFEDYTFEEPEYRWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRVGAIET 549
            Q WW  E  +++VK Y  SL LAL+ R+  +EPRFIPSLSMFPTF++GDQLAVDK+S K+ RPY+R DVVVF PP  F +    G K +ALIKRV+AV GD V++KDG +L+VNG  Q E +T E+  Y WGP+ VP GM+MVLGDNRNHSLDSH+WGFLP ENVIGRA+FKYWP WR+G IET
Sbjct:   79 QRWWADEDLRAEVKSYTVSLGLALLFRAFIVEPRFIPSLSMFPTFDVGDQLAVDKIS-KVVRPYERNDVVVFTPPQAFFDVMGSGTKKEALIKRVVAVAGDVVEMKDGGTLYVNGVPQPEGFTNEKAFYDWGPREVPAGMLMVLGDNRNHSLDSHVWGFLPKENVIGRAVFKYWPVWRLGLIET 261          
BLAST of mRNA_H-canaliculatus_F_contig14149.3268.1 vs. uniprot
Match: A0A836CAW9_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAW9_9STRA)

HSP 1 Score: 231 bits (589), Expect = 3.270e-75
Identity = 105/151 (69.54%), Postives = 124/151 (82.12%), Query Frame = 1
Query:   94 LEPRFIPSLSMFPTFEIGDQLAVDKLSNKLSRPYQRKDVVVFYPPPKFSEFSNRGKGDALIKRVIAVGGDNVQIKDGSLFVNGQEQFEDYTFEEPEYRWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRVGAIE 546
            +EPR+IPSLSMFPTFE+GDQLAV+K++ +  RPY R DVVVFYPP  FS FS RG  +ALIKR++AV GD VQI+ G +++NGQ Q E +  ++PEY WGP  VP G VMVLGDNRNHSLDSHIWGFLP ENVIGRA+FKYWPPWR GA+E
Sbjct:    1 MEPRYIPSLSMFPTFEVGDQLAVEKVT-RYYRPYSRHDVVVFYPPEAFSLFSARGTDEALIKRIVAVEGDTVQIRGGKVYLNGQAQDEPFVTDKPEYEWGPMVVPAGKVMVLGDNRNHSLDSHIWGFLPRENVIGRAVFKYWPPWRAGAVE 150          
BLAST of mRNA_H-canaliculatus_F_contig14149.3268.1 vs. uniprot
Match: B8BZJ0_THAPS (Mitochondrial inner membrane protease subunit (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZJ0_THAPS)

HSP 1 Score: 229 bits (585), Expect = 3.980e-74
Identity = 110/181 (60.77%), Postives = 139/181 (76.80%), Query Frame = 1
Query:   10 EWWER-EGKSDVKIYATSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLSNKLSRPYQRKDVVVFYPPPKFSEF---SNRGKGDALIKRVIAVGGDNVQIKDGSLFVNGQEQFEDYTFEEPEYRWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRVGA 540
            EW+   EGK DVK Y  SL +AL++R + +EPR+IPSLSMFPTFE+GDQLAV+K++ ++ RP+ R +VVVF+PP KF E    ++R   +ALIKR++A  GD V++  G LFVNG EQ E +T E+ EY +GP  VP G V+VLGDNRNHSLD HIWGFLPTENVIGRA+F YWPPWR G+
Sbjct:    1 EWFASDEGKEDVKTYTVSLGVALLLRLLIIEPRYIPSLSMFPTFEVGDQLAVEKVTKRI-RPFSRNEVVVFHPPMKFREIVGDTSRKAKEALIKRIVATEGDKVEVMGGKLFVNGVEQEEPFTAEDAEYDFGPVVVPPGNVLVLGDNRNHSLDGHIWGFLPTENVIGRAVFVYWPPWRCGS 180          
BLAST of mRNA_H-canaliculatus_F_contig14149.3268.1 vs. uniprot
Match: K0S0N9_THAOC (Mitochondrial inner membrane protease subunit n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S0N9_THAOC)

HSP 1 Score: 229 bits (585), Expect = 1.060e-72
Identity = 108/182 (59.34%), Postives = 139/182 (76.37%), Query Frame = 1
Query:    4 IQEWW-EREGKSDVKIYATSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLSNKLSRPYQRKDVVVFYPPPKFSEF---SNRGKGDALIKRVIAVGGDNVQIKDGSLFVNGQEQFEDYTFEEPEYRWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRVG 537
            +QEW+   EGK DV+ Y TSL +AL++R + +EPR+IPSLSM+PTFE+GDQLAV+K++ ++ RP  R +VVVF PP  F E    ++R   +ALIKR++A  GD V++  G LFVNG+EQ E +T E+ +Y +GP  VP G V+VLGDNRNHSLD HIWGFLP ENVIGRA+F YWPPWRVG
Sbjct:  101 VQEWFASEEGKEDVRTYTTSLGIALLLRLLIIEPRYIPSLSMYPTFEVGDQLAVEKVTKRI-RPLNRNEVVVFNPPTSFKEIVGDTSRKAKEALIKRIVATEGDKVEVMGGKLFVNGKEQDEPFTAEDAQYEFGPVLVPAGEVLVLGDNRNHSLDGHIWGFLPAENVIGRAVFVYWPPWRVG 281          
BLAST of mRNA_H-canaliculatus_F_contig14149.3268.1 vs. uniprot
Match: A0A6V1AJW1_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6V1AJW1_9STRA)

HSP 1 Score: 229 bits (585), Expect = 1.060e-72
Identity = 112/183 (61.20%), Postives = 142/183 (77.60%), Query Frame = 1
Query:    4 IQEWWER-EGKSDVKIYATSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLSNKLSRPYQRKDVVVFYPPPKFSEF---SNRGKGDALIKRVIAVGGDNVQIK-DGSLFVNGQEQFEDYTFEEPEYRWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRVG 537
            IQEW+   EGK DVK Y  SL++AL++R + +EPR+IPSLSM+PTFE+GDQLAV+K++ ++ RP+ R +VVVF PP +F E    S+R   +ALIKR++AV GD V++K  G LFVNG +Q E +T E+ EY +GP  VP G V+VLGDNRNHSLD HIWGFLP ENVIGRA+F YWPPWRVG
Sbjct:  100 IQEWFASDEGKEDVKTYTVSLSVALLLRLLIIEPRYIPSLSMYPTFEVGDQLAVEKVTKRI-RPFNRNEVVVFNPPERFRELVGESSRKSKEALIKRIVAVEGDTVEVKMGGKLFVNGVQQDEPFTAEDAEYEFGPVIVPPGDVLVLGDNRNHSLDGHIWGFLPAENVIGRAVFVYWPPWRVG 281          
BLAST of mRNA_H-canaliculatus_F_contig14149.3268.1 vs. uniprot
Match: A0A7R9WYP6_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WYP6_9STRA)

HSP 1 Score: 229 bits (583), Expect = 4.180e-72
Identity = 110/187 (58.82%), Postives = 139/187 (74.33%), Query Frame = 1
Query:    1 GIQEWWER-EGKSDVKIYATSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLSNKLSRPYQRKDVVVFYPPPKFSEFSNRGKG-------DALIKRVIAVGGDNVQIKDGSLFVNGQEQFEDYTFEEPEYRWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRVG 537
            GIQ W +  EGK D+K Y TSLALAL++R   +EPRFIPSLSM+PTF++GDQLAV+K++ ++ +P  R++VVVF PP  F E      G       +ALIKR++A+ GD V++K G L++NG  Q E YT E+ EY +GP  VPEG V+VLGDNRNHSLD HIWGFLP ENVIGRA+F YWPPWR+G
Sbjct:  118 GIQRWLKSDEGKEDIKTYFTSLALALLLRFTIIEPRFIPSLSMYPTFDVGDQLAVEKVTKRI-KPLYRREVVVFNPPATFREVIVNDYGQDPKRAKEALIKRIVAIEGDQVEVKKGKLYINGDLQNEPYTAEDAEYEFGPVVVPEGAVLVLGDNRNHSLDGHIWGFLPQENVIGRAVFVYWPPWRLG 303          
BLAST of mRNA_H-canaliculatus_F_contig14149.3268.1 vs. uniprot
Match: A0A7J7IBZ0_9RHOD (Mitochondrial inner membrane protease subunit n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IBZ0_9RHOD)

HSP 1 Score: 226 bits (577), Expect = 4.930e-72
Identity = 111/200 (55.50%), Postives = 137/200 (68.50%), Query Frame = 1
Query:    7 QEWWER----EGKSDVKIYATSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLSNKLSRPYQRKDVVVFYPPPKFSEFSNR----------------GKGDALIKRVIAVGGDNVQIKDGSLFVNGQEQFEDYTFEEPEYRWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRVGAIE 546
            + WW R    E  SDV+++  S A A+++R   +EPR+IPSLSMFPTFEIGDQL VDK + KL R  +R DVVVFYPPP   E S                  G  DA+IKRV+AV GD V ++DG L+VNG+ Q E Y  E+P+YRWGP  VPEG ++VLGDNR++SLDSHIWGFLP  NVIGRA+F+YWP  R+G IE
Sbjct:   46 RRWWHRLLYDEQFSDVRVFTASFAAAVLLRVFVIEPRYIPSLSMFPTFEIGDQLFVDKATQKLGRHIERGDVVVFYPPPALIEASKMTAQALNAAGEKDVHQYGAKDAMIKRVVAVAGDTVAVRDGRLYVNGEAQIEPYVTEQPDYRWGPVQVPEGCLVVLGDNRSNSLDSHIWGFLPERNVIGRAVFRYWPITRMGLIE 245          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14149.3268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUG3_9PHAE1.170e-12593.99Mitochondrial inner membrane protease subunit n=1 ... [more]
D8LS42_ECTSI1.070e-12493.99Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A6T5N089_HETAK1.700e-8568.11Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A7S2S8J5_9STRA3.710e-7664.13Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A836CAW9_9STRA3.270e-7569.54Mitochondrial inner membrane protease subunit n=1 ... [more]
B8BZJ0_THAPS3.980e-7460.77Mitochondrial inner membrane protease subunit (Fra... [more]
K0S0N9_THAOC1.060e-7259.34Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A6V1AJW1_9STRA1.060e-7261.20Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A7R9WYP6_9STRA4.180e-7258.82Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A7J7IBZ0_9RHOD4.930e-7255.50Mitochondrial inner membrane protease subunit n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14149contigH-canaliculatus_F_contig14149:771..2675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score363.6
Seed ortholog evalue5.4e-98
Seed eggNOG ortholog2880.D8LS42
Preferred nameTPP1
KEGG koko:K03100
KEGG Pathwayko02024,ko03060,map02024,map03060
GOsGO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006465,GO:0006508,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008233,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009657,GO:0009668,GO:0009987,GO:0010027,GO:0010467,GO:0016020,GO:0016043,GO:0016485,GO:0016787,GO:0019538,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034641,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0051604,GO:0055035,GO:0061024,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564
EggNOG free text desc.serine-type peptidase activity
EggNOG OGsCOG0681@1,KOG0171@2759
EC3.4.21.89
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSignal peptidase I (SPase I) (Leader peptidase I)
Ec32 orthologEc-12_004880.1
Exons3
Model size553
Cds size552
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14149.3268.1prot_H-canaliculatus_F_contig14149.3268.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14149 771..2675 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929164.7508724-CDS-H-canaliculatus_F_contig14149:770..9501622929164.7508724-CDS-H-canaliculatus_F_contig14149:770..950Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14149 771..950 -
1696845701.873178-CDS-H-canaliculatus_F_contig14149:770..9501696845701.873178-CDS-H-canaliculatus_F_contig14149:770..950Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14149 771..950 -
1622929164.762926-CDS-H-canaliculatus_F_contig14149:1979..20841622929164.762926-CDS-H-canaliculatus_F_contig14149:1979..2084Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14149 1980..2084 -
1696845701.88647-CDS-H-canaliculatus_F_contig14149:1979..20841696845701.88647-CDS-H-canaliculatus_F_contig14149:1979..2084Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14149 1980..2084 -
1622929164.7726016-CDS-H-canaliculatus_F_contig14149:2408..26751622929164.7726016-CDS-H-canaliculatus_F_contig14149:2408..2675Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14149 2409..2675 -
1696845701.8954227-CDS-H-canaliculatus_F_contig14149:2408..26751696845701.8954227-CDS-H-canaliculatus_F_contig14149:2408..2675Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14149 2409..2675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14149.3268.1

>prot_H-canaliculatus_F_contig14149.3268.1 ID=prot_H-canaliculatus_F_contig14149.3268.1|Name=mRNA_H-canaliculatus_F_contig14149.3268.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=184bp
GIQEWWEREGKSDVKIYATSLALALVVRSVALEPRFIPSLSMFPTFEIGD
QLAVDKLSNKLSRPYQRKDVVVFYPPPKFSEFSNRGKGDALIKRVIAVGG
DNVQIKDGSLFVNGQEQFEDYTFEEPEYRWGPQTVPEGMVMVLGDNRNHS
LDSHIWGFLPTENVIGRAIFKYWPPWRVGAIET*
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mRNA from alignment at H-canaliculatus_F_contig14149:771..2675-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14149.3268.1 ID=mRNA_H-canaliculatus_F_contig14149.3268.1|Name=mRNA_H-canaliculatus_F_contig14149.3268.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1905bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14149:771..2675- (Hapterophycus canaliculatus Oshoro5f female)
GGGATCCAAGAGTGGTGGGAAAGAGAGGGCAAGTCGGACGTTAAGATCTA CGCCACCTCTCTCGCGCTCGCGCTGGTGGTGAGGTCGGTGGCCCTCGAGC CGCGCTTCATCCCGTCCCTTTCCATGTTCCCGACCTTCGAGATCGGCGAC CAGTTGGCCGTGGACAAGCTTTCGAACAAACTCTCTCGCCCTTACCAGAG GAAAGACGTGGTTGTGTTCTACCCGCCTCCCAAGTTCAGCGAGTTTTCCA ACAGGGGGAAGGGCGACGTGAGTGCGCTCGTTTTCGATCGGGGTCGAAGA AAGGAAGCAGAGAAAGCGCTTGGATTCTGACCAGTCCGTTCCGTTGGCGG CCCGGCAGGCACGTCCTCTGAAGTGATGCGTTGCCAGCGTTTTGGAAAAC AAGGGGGAAAAGACAGCTGCTCAAGCATGAACAGTCACCGCCGACAGCGC CACATGCACGCTTGTGGCGCACTCTACTCTCCAGCAGGAGTTGTTGCTCT TTAAGCCGTTGATTACGCTGCTGCCGCCCGTTTCTTTCTCTCCTGCCCCC CACCTCTCGCCCCATCGGTTGGGCGGGTTCCACTCGCGCAGGCGCTTATC AAGCGAGTCATCGCCGTGGGCGGAGACAACGTGCAGATTAAGGACGGCTC GCTGTTTGTGAACGGGCAGGAGCAGTTCGAGGACTACACTTTCGAGGTGC GCGCGCCCTCTTGCGTCCGCGTACGGTCGCTCGCGTCGTTGAACATCTTG CTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTGTCGCCATCCCCGTTCCT AATCCTCGTCCGTGCCGCGTTGCTCAATTGCGTCTCTTCCACGAAGTGCG AATTATATCGTCGTTGTTGTGCTGTTGCGCCCGCTTCACTTAAATGGCAA GCGTCAAGCTTCCAACAGAGCGGCCGGGGGACACAAATCCCGTGACGAAG CGGACTGCGCTCGCCGTGCAAGGTCGAACACCGCACTTGTTTTAGAGGGA GCAGCCTCTGTAGAGGGCGGACAGCAGCACAAGTCACCCCAACCGATCAG CAGGACAAAACGGATGTAGCGGGCCCCCCAAATGTATGGCTAACGACGAA AGAGGCCATGCGCGAAGACAAAGCTAGGGGCGCTGTACTTACCATACAGT CTTCGCTGCCCTGTTGTGATCAACCCGGTCTCTGCTGCTGCGGCTGCTGT TGTAAGTTGCTTTTGTTGCTTTTGACCTCCTGCTGCAACCTCTCTCTATT TTGGTACAAGAGAGGTGGACAGAGCGTGTAGGAGAAGTAGAGCTGCAGCG GAGGCATGCTCTGGCAGAGGAGCCATGAATCCCCACCACCCTGGCCTCCA GAGACATGATTTTTTGTCCTCTGCCAGTCCTCGCTTACTCTCGGGTTCAA ATCGTTCGCATTTCCCCCCCCATCGTGCGGCCGTCGCGGAAAATCTGAGG CTTTCTGGAATTTTCCTCAAGCCAAACTTCAATCTGCGGAAATCTGAGCC AGTGATCTTAACAAAATAGGCAAACGTCTGATAGCACAAGTATCAGTCAC ATGTCGCGTATTGCTGCACAGCACCATTATGAATAGCGGTTCAAGATGAG TTCAGTGGGCCGAAGGGACTCTCATTTAATGACTAGGGCTGCTGCTGCTG CTGCTGCTGCTGCTACCACTACTGCTCTCTCCTACATCACATCGCGCCAA CCCCCTGTTACTTTTTTTGCTGCAGGAGCCAGAATACAGGTGGGGGCCGC AGACTGTCCCGGAGGGCATGGTCATGGTGTTGGGAGACAATCGGAACCAC AGCCTGGACTCGCACATCTGGGGGTTCCTTCCGACGGAAAACGTAATAGG AAGGGCCATTTTCAAGTATTGGCCGCCGTGGCGAGTCGGGGCTATTGAGA CCTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14149:771..2675-

>mRNA_H-canaliculatus_F_contig14149.3268.1 ID=mRNA_H-canaliculatus_F_contig14149.3268.1|Name=mRNA_H-canaliculatus_F_contig14149.3268.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1104bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14149:771..2675- (Hapterophycus canaliculatus Oshoro5f female)
GGGATCCAAGAGTGGTGGGAAAGAGAGGGCAAGTCGGACGTTAAGATCTA
CGCCACCTCTCTCGCGCTCGCGCTGGTGGTGAGGTCGGTGGCCCTCGAGC
CGCGCTTCATCCCGTCCCTTTCCATGTTCCCGACCTTCGAGATCGGCGAC
CAGTTGGCCGTGGACAAGCTTTCGAACAAACTCTCTCGCCCTTACCAGAG
GAAAGACGTGGTTGTGTTCTACCCGCCTCCCAAGTTCAGCGAGTTTTCCA
ACAGGGGGAAGGGCGACGGGATCCAAGAGTGGTGGGAAAGAGAGGGCAAG
TCGGACGTTAAGATCTACGCCACCTCTCTCGCGCTCGCGCTGGTGGTGAG
GTCGGTGGCCCTCGAGCCGCGCTTCATCCCGTCCCTTTCCATGTTCCCGA
CCTTCGAGATCGGCGACCAGTTGGCCGTGGACAAGCTTTCGAACAAACTC
TCTCGCCCTTACCAGAGGAAAGACGTGGTTGTGTTCTACCCGCCTCCCAA
GTTCAGCGAGTTTTCCAACAGGGGGAAGGGCGACGCGCTTATCAAGCGAG
TCATCGCCGTGGGCGGAGACAACGTGCAGATTAAGGACGGCTCGCTGTTT
GTGAACGGGCAGGAGCAGTTCGAGGACTACACTTTCGAGGCGCTTATCAA
GCGAGTCATCGCCGTGGGCGGAGACAACGTGCAGATTAAGGACGGCTCGC
TGTTTGTGAACGGGCAGGAGCAGTTCGAGGACTACACTTTCGAGGAGCCA
GAATACAGGTGGGGGCCGCAGACTGTCCCGGAGGGCATGGTCATGGTGTT
GGGAGACAATCGGAACCACAGCCTGGACTCGCACATCTGGGGGTTCCTTC
CGACGGAAAACGTAATAGGAAGGGCCATTTTCAAGTATTGGCCGCCGTGG
CGAGTCGGGGCTATTGAGACCTAGGAGCCAGAATACAGGTGGGGGCCGCA
GACTGTCCCGGAGGGCATGGTCATGGTGTTGGGAGACAATCGGAACCACA
GCCTGGACTCGCACATCTGGGGGTTCCTTCCGACGGAAAACGTAATAGGA
AGGGCCATTTTCAAGTATTGGCCGCCGTGGCGAGTCGGGGCTATTGAGAC
CTAG
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