mRNA_H-canaliculatus_F_contig1393.3124.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1393.3124.1
Unique NamemRNA_H-canaliculatus_F_contig1393.3124.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1393.3124.1 vs. uniprot
Match: A0A6H5KDV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV2_9PHAE)

HSP 1 Score: 486 bits (1251), Expect = 2.000e-168
Identity = 255/308 (82.79%), Postives = 278/308 (90.26%), Query Frame = 1
Query:    1 PTQSCLKAGLVAEE-RGTSPERSGGQRGEDQFERWAGQAGIKAPKLRHEVFADDLIGQLR--RAVEATSKSEQLVTVPAKAAISLTASESSPFRSWVSSEFWESQQWYVKLALKLLWERQLGAASAVEGYVNVLPAQGSFETLIHWTDEELDALKYSKCAASAKRQRATWDKLHQDLAARCPEGAGRMVTRDDLIWALECVLSRAFNGRFGGGQNSALLSAGLLVASGAAYVLTEQPVWALVAALALLPLTLPELGSINSALTGR--SATASSDYVLVPFVDSMNHVTSAKTELSFSPVSGDLSVSVN 909
            P +S LKA  VAE+ R TS E+SG +RGED+FERWA QAGI+APKLRHEVFAD L+G LR  +AVEATSKSEQLVTVPAKAAISLTASES+PFRSWVS EFW+SQQWYVKLALKLLWERQLGAASAVEGYVNVLP QGSFETLIHWTD+ELD LKYS+CAASAKRQRA WDKLH+DL ARCPEGAGR VTRDDL+WALECVLSRAFNGRFGGGQ SA+LSAGL  ASGAAY +TEQPVW LVAALALLPLTLPELGS+ +A++G+  +  A+SDYVLVPFVDSMNHVTSAKTELSFSPVSGDL VSVN
Sbjct:   54 PAESRLKAEAVAEDSRSTSSEKSGERRGEDRFERWAAQAGIRAPKLRHEVFADGLVGDLRGLKAVEATSKSEQLVTVPAKAAISLTASESTPFRSWVSPEFWDSQQWYVKLALKLLWERQLGAASAVEGYVNVLPVQGSFETLIHWTDQELDTLKYSRCAASAKRQRAAWDKLHEDLVARCPEGAGRAVTRDDLVWALECVLSRAFNGRFGGGQKSAVLSAGLFAASGAAYAVTEQPVWVLVAALALLPLTLPELGSLQAAVSGKPDAKAAASDYVLVPFVDSMNHVTSAKTELSFSPVSGDLGVSVN 361          
BLAST of mRNA_H-canaliculatus_F_contig1393.3124.1 vs. uniprot
Match: D7G8L0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L0_ECTSI)

HSP 1 Score: 365 bits (936), Expect = 1.260e-123
Identity = 185/221 (83.71%), Postives = 201/221 (90.95%), Query Frame = 1
Query:    1 PTQSCLKAGLVAEE-RGTSPERSGGQRGEDQFERWAGQAGIKAPKLRHEVFADDLIGQLR--RAVEATSKSEQLVTVPAKAAISLTASESSPFRSWVSSEFWESQQWYVKLALKLLWERQLGAASAVEGYVNVLPAQGSFETLIHWTDEELDALKYSKCAASAKRQRATWDKLHQDLAARCPEGAGRMVTRDDLIWALECVLSRAFNGRFGGGQNSALLSA 654
            P +SCLKA  VA++ R TS E+SG +RGED+FERWA QAGI+APKLRHEVFAD L+G LR  +AVEATSKSEQLVTVPAKAAISLTASES+PFRSWVS EFW+SQQWYVKLALKLLWERQLGAASAVEGYVNVLPAQGSFETLIHWTD+ELDAL+YS+CAASAKRQRA WDKLH+DL  RCPEGAGR VTRDDL+WALECVLSRAFNGRFGGGQ SA L A
Sbjct:   54 PAESCLKAEAVAQDSRSTSSEKSGERRGEDRFERWAAQAGIRAPKLRHEVFADGLVGDLRGLKAVEATSKSEQLVTVPAKAAISLTASESTPFRSWVSPEFWDSQQWYVKLALKLLWERQLGAASAVEGYVNVLPAQGSFETLIHWTDQELDALEYSRCAASAKRQRAAWDKLHEDLVVRCPEGAGRAVTRDDLVWALECVLSRAFNGRFGGGQKSAPLMA 274          
BLAST of mRNA_H-canaliculatus_F_contig1393.3124.1 vs. uniprot
Match: A0A7S3XNH5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNH5_HETAK)

HSP 1 Score: 193 bits (490), Expect = 2.400e-52
Identity = 120/278 (43.17%), Postives = 162/278 (58.27%), Query Frame = 1
Query:   91 FERWAGQAGIKAPKLRHEVFADDLIGQLRRAVEATSK---SEQLVTVPAKAAISLTASESSPFRSWVSSEFWESQQWYVKLALKLLWERQLGAASAVEGYVNVLPAQGSFETLIHWTDEELDALKYSKCAASAKRQRATWDKLHQDLAARCPEGAGRMVTRDDLIWALECVLSRAFNGRFGGGQNSALLSAGL--LVASGAAYVLTEQPVWALVAALALLPLTLPELGSINSALTGRSATAS-SDYVLVPFVDSMNHVTSAKTELSFSPVSGDLSVSV 906
            FE WA    IK   LRHE F  + +G   + ++A  K    +QLV +P K  IS   SE  PF  W+S+ FW+ Q  Y++LALKLLWE++LG  SAV+ YV++LP   + +TL +WTDEELD L+Y     S  RQR  WD+LH+ L +  P GA      ++L WAL CVLSRAF G   G QN A L+  L  L+A    YV  + P W L AA AL    LP  G++  A T        S+ VL+P +DS+NH T+ +T+L F+P++    +SV
Sbjct:   66 FENWAQNKNIKFDGLRHEQF--EFLGSKIQGIKALGKVDAGKQLVQLPKKFTISTYVSEKCPFPGWISNSFWDKQPNYIRLALKLLWEKKLGENSAVQAYVDLLPDPENLDTLYYWTDEELDLLRYPVLKNSVLRQRKEWDELHKQLVSSSPGGAEGAPAPEELAWALGCVLSRAFAGARTGLQNRATLAVQLAALLAGAGLYVAQDSP-WGLAAAAAL---ALP--GTLQEARTAMDPELQKSELVLLPMIDSINHQTTVETDLGFNPLTESFGISV 335          
BLAST of mRNA_H-canaliculatus_F_contig1393.3124.1 vs. uniprot
Match: A0A7S3XME2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XME2_HETAK)

HSP 1 Score: 193 bits (490), Expect = 2.680e-52
Identity = 120/278 (43.17%), Postives = 162/278 (58.27%), Query Frame = 1
Query:   91 FERWAGQAGIKAPKLRHEVFADDLIGQLRRAVEATSK---SEQLVTVPAKAAISLTASESSPFRSWVSSEFWESQQWYVKLALKLLWERQLGAASAVEGYVNVLPAQGSFETLIHWTDEELDALKYSKCAASAKRQRATWDKLHQDLAARCPEGAGRMVTRDDLIWALECVLSRAFNGRFGGGQNSALLSAGL--LVASGAAYVLTEQPVWALVAALALLPLTLPELGSINSALTGRSATAS-SDYVLVPFVDSMNHVTSAKTELSFSPVSGDLSVSV 906
            FE WA    IK   LRHE F  + +G   + ++A  K    +QLV +P K  IS   SE  PF  W+S+ FW+ Q  Y++LALKLLWE++LG  SAV+ YV++LP   + +TL +WTDEELD L+Y     S  RQR  WD+LH+ L +  P GA      ++L WAL CVLSRAF G   G QN A L+  L  L+A    YV  + P W L AA AL    LP  G++  A T        S+ VL+P +DS+NH T+ +T+L F+P++    +SV
Sbjct:   66 FENWAQNKNIKFDGLRHEQF--EFLGSKIQGIKALGKVDAGKQLVQLPKKFTISTYVSEKCPFPGWISNSFWDKQPNYIRLALKLLWEKKLGENSAVQAYVDLLPDPENLDTLYYWTDEELDLLRYPVLKNSVLRQRKEWDELHKQLVSSSPGGAEGAPAPEELAWALGCVLSRAFAGARTGLQNRATLAVQLAALLAGAGLYVAQDSP-WGLAAAAAL---ALP--GTLQEARTAMDPELQKSELVLLPMIDSINHQTTVETDLGFNPLTESFGISV 335          
BLAST of mRNA_H-canaliculatus_F_contig1393.3124.1 vs. uniprot
Match: A0A7S2UY30_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY30_9STRA)

HSP 1 Score: 140 bits (354), Expect = 7.670e-37
Identity = 75/172 (43.60%), Postives = 104/172 (60.47%), Query Frame = 1
Query:   91 FERWAGQAGIKAPKLRHEVFADDLIGQLRRAVEAT---SKSEQLVTVPAKAAISLTASESSPFRSWVSSEFWESQQWYVKLALKLLWERQLGAASAVEGYVNVLPAQGSFETLIHWTDEELDALKYSKCAASAKRQRATWDKLHQDLAARCPEGAGRMVTRDDLIWALECVL 597
            FE WA  +GIK   L+H  F  D +G+    V+A     + ++LV VP    IS T SE  PF  WV  +FW  Q  Y++LALKLLWER+LG+ S +EGY+  LP   SF TL HW+ EEL+ L+      + + Q+ TW   + +L    P+GAG+ +T +DL+WAL+CVL
Sbjct:   70 FEDWAKGSGIKFDGLKHVDF--DYMGESAPGVKADVDIPERKRLVFVPKDRTISATPSEDCPFPDWVDGDFWNRQPLYMRLALKLLWERKLGSQSKMEGYIKSLPEPDSFNTLQHWSAEELEYLRDPILIETVQAQQGTWKDTYNELTLFSPDGAGKDLTEEDLVWALDCVL 239          
BLAST of mRNA_H-canaliculatus_F_contig1393.3124.1 vs. uniprot
Match: A0A0G4FC07_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FC07_VITBC)

HSP 1 Score: 126 bits (316), Expect = 6.080e-29
Identity = 103/295 (34.92%), Postives = 144/295 (48.81%), Query Frame = 1
Query:   91 FERWAGQ-AGIKAPKLRHEVFADDLIGQLRRAVEATSK------------SEQLVTVPAKAAISLTASESSP--FRSWVSSEFWESQQWYVKLALKLLWERQLGAASAVEGYVNVLPAQGSFETLIHWTDEELDALKYSKCAASAKRQRATWDKLHQDLAAR-CPEGAGRMVTRDDLIWALECVLSRAFNGRFGGGQNSALLSAGLLVASGAAYVLT-----------EQPVWALVA--ALALLPLTLPELGSINSALTGRSAT--ASSDYVLVPFVDSMNHVTSAKTELSFSPV 882
            FE+WA + A +    + H  F D   G+   ++ A  +             E L+ VP  AAI  TA+ + P     W+++ +W+     V+LALKLL E++ G AS    YV  LP  GSF T +HW+D+EL  LK  +     KRQR  W  LH+DL  R   + +G  ++ +D  WALE V SRAF G F   Q S LL   L +A   A               + P+  +VA  A ALLP      G  +SAL GR       SD  LVP +DS+NH+T ++ +  +  V
Sbjct:  105 FEQWAREKARVMFQSVSHGYFLDSNRGKPALSLAALQRCRGVKVNADVKAGEALIAVPIDAAIVATANGTLPEELSGWLNAPYWKEASLPVRLALKLLHEKEKGEASEWAEYVAFLPPVGSFPTPLHWSDDELQKLKLGRMIEMVKRQREGWRGLHEDLLQRGLKDASGGSLSWEDFAWALEIVSSRAFAGNFT--QTSPLLLGALQLAWAIAVAFAIVQLYTSSGQADPPIPLIVAGGAAALLP------GIASSALEGRRGADKGGSDLALVPVLDSVNHLTVSEAQFGYDGV 391          
BLAST of mRNA_H-canaliculatus_F_contig1393.3124.1 vs. uniprot
Match: A0A7S3EP57_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EP57_9RHOD)

HSP 1 Score: 110 bits (275), Expect = 8.530e-24
Identity = 85/266 (31.95%), Postives = 138/266 (51.88%), Query Frame = 1
Query:  100 WAGQAGIKAPKLRHEVFADDLIGQLRRAVEATSKSEQLVTVPAKAAI-SLTASESSPFRSWVSSEFWESQQWYVKLALKLLWERQLGAASAVEGYVNVLPAQGSFETLIHWTDEELDALKYSKCAASAKRQRATWDKLHQDLAARCPEGAGRMVTRDDLIWALECVLSRAFNGR-----FGGGQNSALLSAGLLVASGAAYVL-TEQPVWAL-VAALALLPLTLPELGSINSALTGRSATASSDYVLVPFVDSMNHVTSAKTELSF 873
            WA   GI+   +    FA ++ G +  A +    S  +V VP +  + S +  E++P  S+V+S +W+SQ+W+V+LAL+L++++Q      + GYVN LP   +F T  HWT EEL   +Y         Q+  W +LH+ L     +   R V  D+ +WALECV SRAF+G      FG    +   +  L VA+   ++  +EQ +  L +A +ALL   L     +  A+ G        Y+L P +D  NH + A++++S+
Sbjct:   36 WARDGGIQWNVMNLHTFAGNVRGMI--AEQDFDASSAIVKVPKEMVLESNSIPETNPIPSFVTSSYWKSQRWWVRLALRLVYQKQTDKKPNLSGYVNALPK--TFSTPFHWTAEELQETQYIPIQKQVVNQQQEWKRLHRLLTENLKDE--RSVEFDEFVWALECVRSRAFSGEAEATPFGERLKTIAFAGALSVAALTLHLADSEQVLNGLSLAVIALLSYDLI-YPRVQKAIGGEEWKR---YILCPIIDFCNHSSRAESDISY 291          
BLAST of mRNA_H-canaliculatus_F_contig1393.3124.1 vs. uniprot
Match: A0A5J4XRG8_9CHLO (N-methyltransferase (ISS) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XRG8_9CHLO)

HSP 1 Score: 107 bits (268), Expect = 1.840e-23
Identity = 59/158 (37.34%), Postives = 88/158 (55.70%), Query Frame = 1
Query:  181 AVEATSKSEQLVTVPAKAAISLTASESSPFRSWVSSEFWESQQWYVKLALKLLWERQLGAASAVEGYVNVLPAQGSFETLIHWTDEELDALKYSKCAASAKRQRATWDKLHQDLAARCPEGAGRMVTRDDLIWALECVLSRAFNGRFGGGQNSALLSA 654
            A  A +  + +VT+P  AA+ +T     PF   +   +W   QW+ K+AL LL ER+ G  SAV GY+  LPA+  F+TL HW+ EEL  L Y       ++Q+  W   ++++ A   +     V  D+L+WALECV SRAF+G + G   +  L+A
Sbjct:    3 AATAINTGDSVVTLPRTAALLVTPKMKCPFPDLIDQAYWAKSQWFEKMALMLLHERKKGKNSAVSGYIEQLPAR--FDTLFHWSPEELQLLMYPPLIQQVQQQKQYWHDHYKNVKAASSDNP---VGEDELVWALECVRSRAFSGPYSGESQTTGLTA 155          
BLAST of mRNA_H-canaliculatus_F_contig1393.3124.1 vs. uniprot
Match: A0A7S3ER15_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ER15_9RHOD)

HSP 1 Score: 105 bits (262), Expect = 5.120e-23
Identity = 62/173 (35.84%), Postives = 96/173 (55.49%), Query Frame = 1
Query:  100 WAGQAGIKAPKLRHEVFADDLIGQLRRAVEATSKSEQLVTVPAKAAI-SLTASESSPFRSWVSSEFWESQQWYVKLALKLLWERQLGAASAVEGYVNVLPAQGSFETLIHWTDEELDALKYSKCAASAKRQRATWDKLHQDLAARCPEGAGRMVTRDDLIWALECVLSRAFNG 615
            WA   GI+   +    FA ++ G +  A +    S  +V VP +  + S +  E++P  S+V+S +W+SQ+W+V+LAL+L++++Q      + GYVN LP   +F T  HWT EEL   +Y         Q+  W +LH+ L     +   R V  D+ +WALECV SRAF+G
Sbjct:   36 WARDGGIQWNVMNLHTFAGNVRGMI--AEQDFDASSAIVKVPKEMVLESNSIPETNPIPSFVTSSYWKSQRWWVRLALRLVYQKQTDKKPNLSGYVNALPK--TFSTPFHWTAEELQETQYIPIQKQVVNQQQEWKRLHRLLTENLKDE--RSVEFDEFVWALECVRSRAFSG 202          
BLAST of mRNA_H-canaliculatus_F_contig1393.3124.1 vs. uniprot
Match: A0A7S3WKM2_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WKM2_EMIHU)

HSP 1 Score: 100 bits (249), Expect = 2.260e-20
Identity = 99/296 (33.45%), Postives = 138/296 (46.62%), Query Frame = 1
Query:   49 TSPERSGGQRGEDQFERWAGQAGIKAPKLRHEVFADDLIGQLRRAVEATSKSEQLVTVP-------AKAAISLTASESSPFRSWVSSEFWESQQWYVKLALKLLWERQLGAASAVEGYVNVLPAQGSFET-LIHWTDEELDALKYSKCAASAKRQRATWDKLHQDLAARCPEGAGRMVTRDDLIWALECVLSRAFNGRFGGGQNSALLSAGLLVASGAAYVLTE-------QPVWA---LVAALALLPLTLPELGSINSALTGRSATASS-DYVLVPFVDSMNHVTSAKTELSFSP 879
            T+P  +GG      FE WA  AGI APK+R +  AD+L   +  A     + E L  VP       A  A+  T + +SP      +  W S  W+ +L++ LL E + G AS + GY++ LP+  SFE  L+ WTD EL  L+Y   AA+ + QR +  +L + L A     AG  VT ++L WA + VLSRAF      G+  A   A   + S AA +          Q  W    L   +A     LP L  +  A+ G      S    L+P +DS NH + A    SF P
Sbjct:   40 TTPPPAGGIA--SSFEGWASSAGIVAPKIRIDD-ADELRNVIVTAD--VEEGEVLCVVPRTRCLDLASLAVDPTKAGASPCERLAPTRLWASLDWHERLSVWLLAEARRGRASEICGYIDYLPSPASFEDGLLDWTDAELAELRYPPLAAAVREQRDSIRRLLEALRAGGGADAGS-VTLEELSWAQQLVLSRAFASDINKGERGATSGA---MGSRAAPLPXXXXXKSGFQKAWERSELSTVVATRMPKLPSLDDLKGAIGGEPVNDPSFAMALMPMLDSFNHKSGAVNGCSFDP 326          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1393.3124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDV2_9PHAE2.000e-16882.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8L0_ECTSI1.260e-12383.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3XNH5_HETAK2.400e-5243.17Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XME2_HETAK2.680e-5243.17Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UY30_9STRA7.670e-3743.60Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A0G4FC07_VITBC6.080e-2934.92Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S3EP57_9RHOD8.530e-2431.95Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A5J4XRG8_9CHLO1.840e-2337.34N-methyltransferase (ISS) n=1 Tax=Trebouxia sp. A1... [more]
A0A7S3ER15_9RHOD5.120e-2335.84Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3WKM2_EMIHU2.260e-2033.45Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1393contigH-canaliculatus_F_contig1393:16650..20613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue1.7e-24
Seed eggNOG ortholog2880.D7G027
EggNOG OGs2CYRM@1,2S5YE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_010890.1
Exons6
Model size909
Cds size909
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1393.3124.1prot_H-canaliculatus_F_contig1393.3124.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1393 16650..20613 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929138.5643973-CDS-H-canaliculatus_F_contig1393:16649..168291622929138.5643973-CDS-H-canaliculatus_F_contig1393:16649..16829Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 16650..16829 +
1696845691.9778152-CDS-H-canaliculatus_F_contig1393:16649..168291696845691.9778152-CDS-H-canaliculatus_F_contig1393:16649..16829Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 16650..16829 +
1622929138.5835645-CDS-H-canaliculatus_F_contig1393:17472..175941622929138.5835645-CDS-H-canaliculatus_F_contig1393:17472..17594Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 17473..17594 +
1696845691.9900172-CDS-H-canaliculatus_F_contig1393:17472..175941696845691.9900172-CDS-H-canaliculatus_F_contig1393:17472..17594Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 17473..17594 +
1622929138.5995991-CDS-H-canaliculatus_F_contig1393:18896..190321622929138.5995991-CDS-H-canaliculatus_F_contig1393:18896..19032Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 18897..19032 +
1696845692.000746-CDS-H-canaliculatus_F_contig1393:18896..190321696845692.000746-CDS-H-canaliculatus_F_contig1393:18896..19032Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 18897..19032 +
1622929138.6193767-CDS-H-canaliculatus_F_contig1393:19212..194101622929138.6193767-CDS-H-canaliculatus_F_contig1393:19212..19410Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 19213..19410 +
1696845692.0148606-CDS-H-canaliculatus_F_contig1393:19212..194101696845692.0148606-CDS-H-canaliculatus_F_contig1393:19212..19410Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 19213..19410 +
1622929138.6341493-CDS-H-canaliculatus_F_contig1393:20037..201761622929138.6341493-CDS-H-canaliculatus_F_contig1393:20037..20176Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 20038..20176 +
1696845692.026377-CDS-H-canaliculatus_F_contig1393:20037..201761696845692.026377-CDS-H-canaliculatus_F_contig1393:20037..20176Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 20038..20176 +
1622929138.6463351-CDS-H-canaliculatus_F_contig1393:20479..206131622929138.6463351-CDS-H-canaliculatus_F_contig1393:20479..20613Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 20480..20613 +
1696845692.036791-CDS-H-canaliculatus_F_contig1393:20479..206131696845692.036791-CDS-H-canaliculatus_F_contig1393:20479..20613Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 20480..20613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1393.3124.1

>prot_H-canaliculatus_F_contig1393.3124.1 ID=prot_H-canaliculatus_F_contig1393.3124.1|Name=mRNA_H-canaliculatus_F_contig1393.3124.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=303bp
PTQSCLKAGLVAEERGTSPERSGGQRGEDQFERWAGQAGIKAPKLRHEVF
ADDLIGQLRRAVEATSKSEQLVTVPAKAAISLTASESSPFRSWVSSEFWE
SQQWYVKLALKLLWERQLGAASAVEGYVNVLPAQGSFETLIHWTDEELDA
LKYSKCAASAKRQRATWDKLHQDLAARCPEGAGRMVTRDDLIWALECVLS
RAFNGRFGGGQNSALLSAGLLVASGAAYVLTEQPVWALVAALALLPLTLP
ELGSINSALTGRSATASSDYVLVPFVDSMNHVTSAKTELSFSPVSGDLSV
SVN
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mRNA from alignment at H-canaliculatus_F_contig1393:16650..20613+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1393.3124.1 ID=mRNA_H-canaliculatus_F_contig1393.3124.1|Name=mRNA_H-canaliculatus_F_contig1393.3124.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3964bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1393:16650..20613+ (Hapterophycus canaliculatus Oshoro5f female)
CCTACGCAGTCGTGCTTGAAGGCAGGGTTGGTCGCAGAGGAGAGAGGGAC TTCCCCGGAAAGGAGCGGGGGGCAGCGAGGGGAGGATCAGTTCGAGCGAT GGGCCGGGCAGGCCGGGATCAAGGCCCCCAAGTTGCGGCACGAGGTCTTT GCGGATGATCTCATCGGACAACTTCGGCGAGTAACTTGTACCGAACTTGG GCTGTGGAGACGTGGGAGCAAAGGTGGCGTGCGAAATATAGGGGTGCCCA TCAACGTGGAGAGCTTCCGCACAACTACGAACGGCAAATAACATCCATCA ATCCATTTATGTGTACTATCGCTATTCTCCACCAGAAGCAAAGACAAAAG AATCTCCTTTCGTTCCGTCGATCAGCTTGATCACTTCGCCTCCAAAGCTC AAAAGCCCTCTTAGGCAGGATGTTCACGTACAATTTATCGCTCGTTCAGT ATAAGCATAACTTAGACTGAATGACTGAACAAACGATCCCGTCGTTGAAT AGCCGGCGTGGCGCAATTGATGTCCCGCGCAGGAAGACAAGCTTGCGGAT TCACGAGTACCTTGTAGGAGTGCCCGGCGCTTAAGGAAGCCCTTTCGTTT TGGCCAAGACGAGAGTGGCTCGTTTCCGCTAGCGCACTGAAGTACAAATT GGCTGGGTCATGATAATCCGCAGCCACAAACACGCAACACACATATACAC ATAGACGCATACACACGTTCTCCCGCAGTATACTGCTGATTAATTGGCTG CTCGTTTTGCTGACGTTTCTTCCTCGACTGGCCCTTCACCCTGCGCACGA CGAAAATCGAAAGGGGTCTGAAGGCGGTGGAAGCAACGTCCAAATCGGAG CAGCTCGTGACGGTTCCGGCAAAGGCTGCCATATCCCTTACTGCGTCTGA GTCGTCGCCATTTAGGTCGTGGGTCTCATCAGAGTTCTGGGAAAGGTATG TGTTTTGGGCGGGTGGGCGGGTGGGCGGGCGGTTGGGTGAGAAGCCGGGT AGATGTCCTTTCGGTCCGTTGCTTCATCGCCCTTTTAGTCAGAGTATTTT GTTCTCCCGACCAGTTTTTTGACGCTGCGGTCAGTTTGGACAATATCTGT CTCGTGCCCTGCTTCGGGTGATAATGAGCCGAGCGAGCAGCGAAATCGCG AGCCTTTATTTCCCTTTGATTCCAGAGGGAAAAAAGGCTTCATATACCAA CCATCGTTCCGATCTTGCGTGTGGGGGTGTCTCAAACTTGACTAGTCGTG GTCGTCAAAAACAGCACTTTTTTGGGAACAGCAAGACGTACAGAGGACCA AATGTCGATCTGACGGCTTCTGATAGGGAAGAAAAATACGGCATGATGCG TAACACCGATGTGCCGGTGTGCCGGTAAGAGATGGCCGCGCTACAGGACG TTTTGTCGCGGAGATTCGGGGAAAACACGCCTTCTCCCGGGGGTTTCCAA CAAAACCACACCAAATGACTGCTGCGTGTGCGGCTCGTTTCGTAGCTTAC AGCAGCACAACAACTCAGCATCCATAGAACGGTCGACCCAGCAAGCAGGC AGCCCAACAGGCATATGAGAGTAGGGTGAGCGCGTGAAGTCTCTGGAGGA GGTGAGGGGCTGCTGGGCGTCACCGACGGCGAAAGTCGTCTGGGTCACAA GCAGCGGCGAGAATGTGACATTCGGTGTAGACAACACGTTCAGATAAATA TGCATCCGCCCCGTACTTTTTGCCATCATGACCAAGTCGCCCGCACTACG CCCCAACGCTGCCTGGGGCAAATTCCAACAGAAAACACCACTCTCTGTTG TTGTGTCAAGTGTTTCTGGGCGTTGCCTGCTTCTGTGGGTCTATCAACTA GTTCTACTGGGAAGTATTCGGAGCGCACCAGCAACGGCTGCAGCGACCGC AGCAGCGTTATTTTCGGAACCGATCCGGGGGGCTCCGGGGGATACCACCC TTCCTCGCACTCGTGAAAATTTTTCCCACCACGAAAATATGGCACGGGTG ATCCAAAAAAGCGTAGCCATTTGTATAAACACATGGTTTCCGACACACGT ACAATGGCACAGCATTGCAGCTGGACCACTGCCAGGTTTTGAGTCCGCTT GGCTCCTCACCCTATATTTTCTAGCCGCTCCGGCTGTTGCTACTGCTGTT GCTGCTGCTCCTTAGGTCACTACTCTCTTGCTGCTGATTTAACGTCAAAC AAAGGCCGCGGGCTTGCTTTCGTTGTTCGTTGTACGCAAACAAATAGCCA ACAGTGGTACGTGAAGCTGGCGCTGAAGCTGTTGTGGGAGCGGCAGCTGG GGGCGGCTTCCGCCGTTGAGGGATACGTCAATGTGCTCCCGGCGCAGGGG AGCTTCGAAACGCTCATACATTGGACCGACGAGGTCAGAAGGTGTAGTGT GAAGGCCGGTCAGCAGTAGCAGTGCCTTGGAACGTTTCTTATGGGTCTGA CAACCGCCACGTCGCATCGCATCGTGTCCCGTTTCAACGCACCACGTAGC GACTTTCAAGTTCCAGCCGCCGCCATGGATGATCCCCTCCCCACTCCGTT GTCCTCTTTTTAGGAGCTGGATGCTCTCAAGTACTCCAAGTGTGCGGCCT CAGCAAAGCGGCAGCGCGCCACTTGGGATAAGCTCCACCAGGATTTGGCG GCGCGTTGCCCTGAGGGGGCCGGTCGAATGGTGACGAGAGACGACCTCAT CTGGGCTTTGGAGTGCGTCCTAAGCCGCGCCTTCAACGGTCGCTTCGGGG GTGGGCAAAACGTGAGAGGGGGTCGTGGGAGCGCGAGAGGGCGAGAGAAA GTTAAATGAGAGAGAGAGATAGAGAGAGAGGGGGAGAGAGAGAGAGAGGG GGGGAGAGAGAGAGAGAGGGGGAGAGAGAGGGAGAGACACAGACAGAGTC AGAGACAGAGACAGAGACAGACAAGCAGATAGGCAGACAGGCAGACAGAC AGACAGAAGACAGAGATACACACATACACAGATAGAGAGAGAGACAGAGA AAGAGAAGCGAAAGGGCAGGCGGGGGAGAGAAAATTGGTGGAGAATGGGA AAGTGAGGGGAGAAAGAGGGCGAGAGCGGTCAAGAGCCAGCGAGAGATAG GGGGTGGGGACTGGGTACAACGAGCAAACTACGGGGAATTGGATACCTGC AGTTCTCTCTGCCCTATGGGATCTCGCGGACTAAGAAGATGGGCTAGACG CCGCGGTTGTTCAGTTGGTACACCCGTGCAACCTGCTGACGGCTGACGGC TCGATCGAGAGAGATTCATCCCTCTGAAGTAGCACAGGAAGAGCTTGACT CGCGGGTACTCTTGTTCACCCATGCCACCCTCTCCCCAAATGCCGCCCGG TCTCCGCTGTCTTCCTCGCCGTTTCCCCATTCTGGTAGTCGGCCCTTTTG AGCGCCGGATTGTTGGTGGCTTCTGGCGCAGCGTACGTGCTGACGGAGCA GCCTGTATGGGCGTTGGTGGCCGCTCTGGCGTTGCTGCCGCTGACTTTAC CCGAGCTCGGCTCGATAAACTCTGCACGTGAGAAAACAACATATCGCTCA AGTCTTGGTGTACCCTACAGCACAAGTCAGACGTTGCTGGTGGTGGCTGT CGGTTTGTCGTTTGTTGGTGTTTCGTGGTGTCCTAGTATGGACTCGTCGC TTTTTAGTGCTTCGGCAGGAACTTGAAGAGAGTTCCTCGTCATTTCCAAA GCGCGGCTATGGTTCCCTATGTTGGCCAACCCTCCTGTCTCCTCCGGTCT CTCTTTTCCCCGCTACTATTCACTGGTCTCCTTCTGCTTCTGCTCGTCTC CTTCCTCGCCGCAAACGATAACCAACGCAGTCACGGGAAGGTCGGCCACG GCGTCCTCAGACTACGTTCTCGTGCCCTTCGTGGACAGCATGAACCATGT CACCAGCGCAAAGACGGAGCTATCCTTCAGTCCCGTTTCGGGTGACCTGA GTGTCTCTGTCAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1393:16650..20613+

>mRNA_H-canaliculatus_F_contig1393.3124.1 ID=mRNA_H-canaliculatus_F_contig1393.3124.1|Name=mRNA_H-canaliculatus_F_contig1393.3124.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1818bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1393:16650..20613+ (Hapterophycus canaliculatus Oshoro5f female)
CCTACGCAGTCGTGCTTGAAGGCAGGGTTGGTCGCAGAGGAGAGAGGGAC
TTCCCCGGAAAGGAGCGGGGGGCAGCGAGGGGAGGATCAGTTCGAGCGAT
GGGCCGGGCAGGCCGGGATCAAGGCCCCCAAGTTGCGGCACGAGGTCTTT
GCGGATGATCTCATCGGACAACTTCGGCGACCTACGCAGTCGTGCTTGAA
GGCAGGGTTGGTCGCAGAGGAGAGAGGGACTTCCCCGGAAAGGAGCGGGG
GGCAGCGAGGGGAGGATCAGTTCGAGCGATGGGCCGGGCAGGCCGGGATC
AAGGCCCCCAAGTTGCGGCACGAGGTCTTTGCGGATGATCTCATCGGACA
ACTTCGGCGAGCGGTGGAAGCAACGTCCAAATCGGAGCAGCTCGTGACGG
TTCCGGCAAAGGCTGCCATATCCCTTACTGCGTCTGAGTCGTCGCCATTT
AGGTCGTGGGTCTCATCAGAGTTCTGGGAAAGGCGGTGGAAGCAACGTCC
AAATCGGAGCAGCTCGTGACGGTTCCGGCAAAGGCTGCCATATCCCTTAC
TGCGTCTGAGTCGTCGCCATTTAGGTCGTGGGTCTCATCAGAGTTCTGGG
AAAGCCAACAGTGGTACGTGAAGCTGGCGCTGAAGCTGTTGTGGGAGCGG
CAGCTGGGGGCGGCTTCCGCCGTTGAGGGATACGTCAATGTGCTCCCGGC
GCAGGGGAGCTTCGAAACGCTCATACATTGGACCGACGAGCCAACAGTGG
TACGTGAAGCTGGCGCTGAAGCTGTTGTGGGAGCGGCAGCTGGGGGCGGC
TTCCGCCGTTGAGGGATACGTCAATGTGCTCCCGGCGCAGGGGAGCTTCG
AAACGCTCATACATTGGACCGACGAGGAGCTGGATGCTCTCAAGTACTCC
AAGTGTGCGGCCTCAGCAAAGCGGCAGCGCGCCACTTGGGATAAGCTCCA
CCAGGATTTGGCGGCGCGTTGCCCTGAGGGGGCCGGTCGAATGGTGACGA
GAGACGACCTCATCTGGGCTTTGGAGTGCGTCCTAAGCCGCGCCTTCAAC
GGTCGCTTCGGGGGTGGGCAAAACGAGCTGGATGCTCTCAAGTACTCCAA
GTGTGCGGCCTCAGCAAAGCGGCAGCGCGCCACTTGGGATAAGCTCCACC
AGGATTTGGCGGCGCGTTGCCCTGAGGGGGCCGGTCGAATGGTGACGAGA
GACGACCTCATCTGGGCTTTGGAGTGCGTCCTAAGCCGCGCCTTCAACGG
TCGCTTCGGGGGTGGGCAAAACTCGGCCCTTTTGAGCGCCGGATTGTTGG
TGGCTTCTGGCGCAGCGTACGTGCTGACGGAGCAGCCTGTATGGGCGTTG
GTGGCCGCTCTGGCGTTGCTGCCGCTGACTTTACCCGAGCTCGGCTCGAT
AAACTCTGCACTCGGCCCTTTTGAGCGCCGGATTGTTGGTGGCTTCTGGC
GCAGCGTACGTGCTGACGGAGCAGCCTGTATGGGCGTTGGTGGCCGCTCT
GGCGTTGCTGCCGCTGACTTTACCCGAGCTCGGCTCGATAAACTCTGCAC
TCACGGGAAGGTCGGCCACGGCGTCCTCAGACTACGTTCTCGTGCCCTTC
GTGGACAGCATGAACCATGTCACCAGCGCAAAGACGGAGCTATCCTTCAG
TCCCGTTTCGGGTGACCTGAGTGTCTCTGTCAACTCACGGGAAGGTCGGC
CACGGCGTCCTCAGACTACGTTCTCGTGCCCTTCGTGGACAGCATGAACC
ATGTCACCAGCGCAAAGACGGAGCTATCCTTCAGTCCCGTTTCGGGTGAC
CTGAGTGTCTCTGTCAAC
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