mRNA_H-canaliculatus_F_contig1390.3103.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1390.3103.1
Unique NamemRNA_H-canaliculatus_F_contig1390.3103.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1390.3103.1 vs. uniprot
Match: A0A6H5JAX9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAX9_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 5.960e-9
Identity = 57/134 (42.54%), Postives = 63/134 (47.01%), Query Frame = 2 
Query:  362 RLPTPTEQTPSPRSNMSNAGARG-FAFGLAPPASQNGXXXXXRPRSADGDHDRYYQGFEGSXXXXXXXXXXGERDLYSVGLG------WRRSAERGAGNSGDEAEXXXXXXXXXDPGFREELEVFASSLRREFE 742
            R+PTPTEQTPSPR  M   G  G FAFG+  P S         P   D DH  +     GS          G    Y  G G      WR S + G G S DE E         D GFREEL+VFASSLRR+FE
Sbjct:   41 RVPTPTEQTPSPRKGMPYGGGGGVFAFGVDSPDSSG-------PDKRD-DHGYFEASEGGSKKAGGCGGNLGTG--YEQGQGVSPARRWR-SEDSGGGESDDEVEGGGV-----DAGFREELDVFASSLRRDFE 158
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1390.3103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JAX9_9PHAE5.960e-942.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1390contigH-canaliculatus_F_contig1390:24630..26503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size748
Cds size720
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1390.3103.1prot_H-canaliculatus_F_contig1390.3103.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1390 24630..26475 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929134.4013767-CDS-H-canaliculatus_F_contig1390:24629..250581622929134.4013767-CDS-H-canaliculatus_F_contig1390:24629..25058Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1390 24630..25058 -
1696845690.456688-CDS-H-canaliculatus_F_contig1390:24629..250581696845690.456688-CDS-H-canaliculatus_F_contig1390:24629..25058Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1390 24630..25058 -
1622929134.4147084-CDS-H-canaliculatus_F_contig1390:26184..264751622929134.4147084-CDS-H-canaliculatus_F_contig1390:26184..26475Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1390 26185..26475 -
1696845690.4660258-CDS-H-canaliculatus_F_contig1390:26184..264751696845690.4660258-CDS-H-canaliculatus_F_contig1390:26184..26475Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1390 26185..26475 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929134.4390366-UTR-H-canaliculatus_F_contig1390:26475..265031622929134.4390366-UTR-H-canaliculatus_F_contig1390:26475..26503Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1390 26476..26503 -
1696845690.4791396-UTR-H-canaliculatus_F_contig1390:26475..265031696845690.4791396-UTR-H-canaliculatus_F_contig1390:26475..26503Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1390 26476..26503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1390.3103.1

>prot_H-canaliculatus_F_contig1390.3103.1 ID=prot_H-canaliculatus_F_contig1390.3103.1|Name=mRNA_H-canaliculatus_F_contig1390.3103.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=240bp
MTEEQANDFTRTIPERVASQDCMTPTMVRTGAGDDARRPREELASRGSSR
WANGKATAGAPYHRRSRPSTTESTTLYGGTGGGGDGSVDEPMLPLAESLS
AETPLASVAADRLPTPTEQTPSPRSNMSNAGARGFAFGLAPPASQNGGGG
GGRPRSADGDHDRYYQGFEGSGGGAGSGGSGGERDLYSVGLGWRRSAERG
AGNSGDEAEGEGGGRGGGDPGFREELEVFASSLRREFELR
back to top

mRNA from alignment at H-canaliculatus_F_contig1390:24630..26503-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1390.3103.1 ID=mRNA_H-canaliculatus_F_contig1390.3103.1|Name=mRNA_H-canaliculatus_F_contig1390.3103.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1874bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1390:24630..26503- (Hapterophycus canaliculatus Oshoro5f female)
TCTCTCAGCAACTCAGTTCCTTACAGAGATGACCGAAGAGCAAGCAAACG
ACTTCACAAGGACGATACCCGAGCGAGTAGCGAGCCAGGACTGCATGACG
CCCACCATGGTTCGTACTGGAGCGGGAGATGACGCACGGCGCCCGAGAGA
AGAACTCGCTTCCAGGGGATCCTCGCGTTGGGCCAACGGCAAGGCCACGG
CCGGCGCCCCATACCACCGCCGCAGCCGGCCATCCACGACCGAGAGCACC
ACGTTGTACGGGGGTACCGGCGGCGGGGGCGATGGGAGTGTCGACGAACC
GATGTTGCCTCTCGCGGAGGTAAGCACTAGAGTTTTTTCTGCCAAGCATG
GTAGACCGAGATAGGGCAGCGTACTTTTTAGGCTGTCCCCCTCAGTTTGG
CCAACCCGGAAGTTGCGGAGTCCATCACACACAACCGCTCTGCACTAGTG
CGTTGGTTCCCTGCCGTGCGGCTACAGATGTTGGGGTAGAGTCTTCTCTG
TGAGGTGTGAGCTGCCAGCCCCGTTCGATTCGTACCTCTGCTGAAAGACG
CGACCCCGCCCACGGGGTTTGGATCCTGGTCTCGAGGGAAATGGGTAAGA
ACAGCAAGCGGCAGGTCTCCTTGTTCGCGCTCCTGTTGCCGTCGGTTTGT
GTTGCGAACTGAAGAAGGATCTTCTACTCTGCTTTTCATTACTGTGCGGC
ATGCTTGCAACTCTAGGCGCAAATACTTTTGGCGTAGCTGCGCGCTCTGA
AACATCGTTTCCTCATGTCTTGGGGGTAAGAGAGGGGGGGTCTGCAGATT
GGTCAGCCCCCCATGCGAAGCCATTTCAGGCCCTGTGTCTGGTTAATTGT
TAATTCTAATCGCGCACACGCGCACACCTTCCAGACTATCATAGCATTGG
TAAATCGTTGGCTAGGTTCTCGAGGAAAAGGTGCACATGTTCGGTCAGAT
GCTGTGCGGAATGGTGTTGCTTTTAATTCTCTGACACGGGAACACGAGAT
ATCGATGCGATTTTTCAGTTGCCGAGACAGCAGGCTCATTTGTCTCCTAC
ATTGCTCGACCCTCGCCTTTCCTCAATGGTACGTAGTTGGAGGACATTCG
AAGCTGGGTATCAAATAGACAACGAGTACTCTTTCCTGGCCCTTTCTACG
TATCAGACCAAGAGTCAAGCGAGAGAGACCTAAAATTGGACTGCACGTGC
GCAGGTGTGAACCATCTCCTGAACCGGATGCACCGGCTTTTCGACAATCC
CAGGCAGACATCCGCACGAGACACATCTGGGGAGATCCCTCGCTGAACAG
CGGGTAGTGTTCCAGCCCCGATCCAAACAAGCACCCTCCGATACGACACG
ATAGGACACATTTCCCTTCCCCGTTGGGCTCTCCCGCGCCCCGCCCGCTG
CTCGCTTTTTCCTTTGGCTTTTACCTTTCTCTTTCCACGCGGCAGAGCCT
TTCCGCGGAGACACCCTTGGCCTCCGTCGCTGCCGACCGTCTCCCCACGC
CGACGGAACAAACGCCATCCCCTCGGAGCAACATGTCGAACGCTGGGGCG
CGAGGCTTCGCGTTCGGACTCGCCCCGCCTGCATCGCAAAACGGCGGTGG
CGGCGGCGGCCGCCCCCGCAGCGCCGATGGCGATCACGATCGATACTACC
AGGGCTTCGAGGGGAGTGGGGGAGGAGCGGGGAGCGGCGGCAGTGGAGGA
GAGAGGGATTTGTATTCTGTTGGCCTAGGGTGGCGGCGCTCGGCGGAGCG
GGGGGCCGGGAACAGCGGTGACGAGGCGGAAGGAGAGGGAGGGGGACGAG
GGGGCGGTGACCCCGGGTTTCGAGAAGAGCTCGAGGTGTTCGCCTCGTCG
TTGCGGAGGGAGTTTGAACTCAGG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1390:24630..26503-

>mRNA_H-canaliculatus_F_contig1390.3103.1 ID=mRNA_H-canaliculatus_F_contig1390.3103.1|Name=mRNA_H-canaliculatus_F_contig1390.3103.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1440bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1390:24630..26503- (Hapterophycus canaliculatus Oshoro5f female)
ATGACCGAAGAGCAAGCAAACGACTTCACAAGGACGATACCCGAGCGAGT
AGCGAGCCAGGACTGCATGACGCCCACCATGGTTCGTACTGGAGCGGGAG
ATGACGCACGGCGCCCGAGAGAAGAACTCGCTTCCAGGGGATCCTCGCGT
TGGGCCAACGGCAAGGCCACGGCCGGCGCCCCATACCACCGCCGCAGCCG
GCCATCCACGACCGAGAGCACCACGTTGTACGGGGGTACCGGCGGCGGGG
GCGATGGGAGTGTCGACGAACCGATGTTGCCTCTCGCGGAGATGACCGAA
GAGCAAGCAAACGACTTCACAAGGACGATACCCGAGCGAGTAGCGAGCCA
GGACTGCATGACGCCCACCATGGTTCGTACTGGAGCGGGAGATGACGCAC
GGCGCCCGAGAGAAGAACTCGCTTCCAGGGGATCCTCGCGTTGGGCCAAC
GGCAAGGCCACGGCCGGCGCCCCATACCACCGCCGCAGCCGGCCATCCAC
GACCGAGAGCACCACGTTGTACGGGGGTACCGGCGGCGGGGGCGATGGGA
GTGTCGACGAACCGATGTTGCCTCTCGCGGAGAGCCTTTCCGCGGAGACA
CCCTTGGCCTCCGTCGCTGCCGACCGTCTCCCCACGCCGACGGAACAAAC
GCCATCCCCTCGGAGCAACATGTCGAACGCTGGGGCGCGAGGCTTCGCGT
TCGGACTCGCCCCGCCTGCATCGCAAAACGGCGGTGGCGGCGGCGGCCGC
CCCCGCAGCGCCGATGGCGATCACGATCGATACTACCAGGGCTTCGAGGG
GAGTGGGGGAGGAGCGGGGAGCGGCGGCAGTGGAGGAGAGAGGGATTTGT
ATTCTGTTGGCCTAGGGTGGCGGCGCTCGGCGGAGCGGGGGGCCGGGAAC
AGCGGTGACGAGGCGGAAGGAGAGGGAGGGGGACGAGGGGGCGGTGACCC
CGGGTTTCGAGAAGAGCTCGAGGTGTTCGCCTCGTCGTTGCGGAGGGAGT
TTGAACTCAGGAGCCTTTCCGCGGAGACACCCTTGGCCTCCGTCGCTGCC
GACCGTCTCCCCACGCCGACGGAACAAACGCCATCCCCTCGGAGCAACAT
GTCGAACGCTGGGGCGCGAGGCTTCGCGTTCGGACTCGCCCCGCCTGCAT
CGCAAAACGGCGGTGGCGGCGGCGGCCGCCCCCGCAGCGCCGATGGCGAT
CACGATCGATACTACCAGGGCTTCGAGGGGAGTGGGGGAGGAGCGGGGAG
CGGCGGCAGTGGAGGAGAGAGGGATTTGTATTCTGTTGGCCTAGGGTGGC
GGCGCTCGGCGGAGCGGGGGGCCGGGAACAGCGGTGACGAGGCGGAAGGA
GAGGGAGGGGGACGAGGGGGCGGTGACCCCGGGTTTCGAGAAGAGCTCGA
GGTGTTCGCCTCGTCGTTGCGGAGGGAGTTTGAACTCAGG
back to top