mRNA_H-canaliculatus_F_contig1388.3078.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1388.3078.1
Unique NamemRNA_H-canaliculatus_F_contig1388.3078.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1388.3078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1388contigH-canaliculatus_F_contig1388:666..854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size189
Cds size168
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929131.7795043-UTR-H-canaliculatus_F_contig1388:665..6861622929131.7795043-UTR-H-canaliculatus_F_contig1388:665..686Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1388 666..686 +
1696845689.3624558-UTR-H-canaliculatus_F_contig1388:665..6861696845689.3624558-UTR-H-canaliculatus_F_contig1388:665..686Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1388 666..686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929131.7926486-CDS-H-canaliculatus_F_contig1388:686..8541622929131.7926486-CDS-H-canaliculatus_F_contig1388:686..854Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1388 687..854 +
1696845689.3716815-CDS-H-canaliculatus_F_contig1388:686..8541696845689.3716815-CDS-H-canaliculatus_F_contig1388:686..854Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1388 687..854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1388.3078.1prot_H-canaliculatus_F_contig1388.3078.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1388 687..854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1388.3078.1

>prot_H-canaliculatus_F_contig1388.3078.1 ID=prot_H-canaliculatus_F_contig1388.3078.1|Name=mRNA_H-canaliculatus_F_contig1388.3078.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=56bp
MRDSAVPPDVTTYTTILSGCKRDSDWKRAETLLLEMGEFGIQPNSRTLTT
ALKVCG
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mRNA from alignment at H-canaliculatus_F_contig1388:666..854+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1388.3078.1 ID=mRNA_H-canaliculatus_F_contig1388.3078.1|Name=mRNA_H-canaliculatus_F_contig1388.3078.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=189bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1388:666..854+ (Hapterophycus canaliculatus Oshoro5f female)
GCTGACGAGATCGTGAAGCGGATGCGCGACAGCGCGGTGCCGCCGGACGT
GACGACGTACACCACCATCCTGTCCGGGTGCAAGAGGGACTCCGATTGGA
AGAGGGCGGAGACCTTGCTGTTGGAGATGGGGGAGTTCGGCATCCAGCCC
AACTCGAGGACGCTGACGACGGCGCTCAAGGTGTGCGGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1388:666..854+

>mRNA_H-canaliculatus_F_contig1388.3078.1 ID=mRNA_H-canaliculatus_F_contig1388.3078.1|Name=mRNA_H-canaliculatus_F_contig1388.3078.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=336bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1388:666..854+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGCGACAGCGCGGTGCCGCCGGACGTGACGACGTACACCACCATCCT
GTCCGGGTGCAAGAGGGACTCCGATTGGAAGAGGGCGGAGACCTTGCTGT
TGGAGATGGGGGAGTTCGGCATCCAGCCCAACTCGAGGACGCTGACGACG
GCGCTCAAGGTGTGCGGAATGCGCGACAGCGCGGTGCCGCCGGACGTGAC
GACGTACACCACCATCCTGTCCGGGTGCAAGAGGGACTCCGATTGGAAGA
GGGCGGAGACCTTGCTGTTGGAGATGGGGGAGTTCGGCATCCAGCCCAAC
TCGAGGACGCTGACGACGGCGCTCAAGGTGTGCGGA
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