prot_H-canaliculatus_F_contig1388.3078.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig1388.3078.1
Unique Nameprot_H-canaliculatus_F_contig1388.3078.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length56
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1388.3078.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..56
e-value: 1.9E-13
score: 52.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 12..45
e-value: 1.6E-7
score: 29.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 8..55
e-value: 2.6E-10
score: 40.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 11.148
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..20
score: 5.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1388contigH-canaliculatus_F_contig1388:687..854 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1388.3078.1mRNA_H-canaliculatus_F_contig1388.3078.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig1388 666..854 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig1388.3078.1 ID=prot_H-canaliculatus_F_contig1388.3078.1|Name=mRNA_H-canaliculatus_F_contig1388.3078.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=56bp
MRDSAVPPDVTTYTTILSGCKRDSDWKRAETLLLEMGEFGIQPNSRTLTT
ALKVCG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf