mRNA_H-canaliculatus_F_contig13697.2960.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13697.2960.1
Unique NamemRNA_H-canaliculatus_F_contig13697.2960.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig13697.2960.1 vs. uniprot
Match: A0A6H5JB66_9PHAE (Methylenetetrahydrofolate reductase (NAD(P)H) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JB66_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 2.250e-39
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 1
Query:   10 TPQGVKNLMDRLGRMKATKPLFVDFTWGAGGSTADLTLDLTLRTKKEHGLVPNMHLTCTNMPVDKIDNALAKCK 231
            T  GVKNLM+RLGRMKATKPLFVDFTWGAGGSTA+LTLDLT RTKKEHGLVPNMHLTCTNMPVDKID+ALA+CK
Sbjct:   38 TDTGVKNLMERLGRMKATKPLFVDFTWGAGGSTAELTLDLTTRTKKEHGLVPNMHLTCTNMPVDKIDHALAQCK 111          
BLAST of mRNA_H-canaliculatus_F_contig13697.2960.1 vs. uniprot
Match: A0A836C869_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C869_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.680e-27
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 1
Query:   10 TPQGVKNLMDRLGRMKATKPLFVDFTWGAGGSTADLTLDLTLRTKKEHGLVPNMHLTCTNMPVDKIDNALAKCK 231
            T QGV NL +RL R+K   P+F DFTWGAGGSTADLTLDLTL  K  HGL PNMHLTCTNMP+++I++AL +C+
Sbjct:   43 TTQGVDNLRERLQRLKKVGPVFADFTWGAGGSTADLTLDLTLEAKHAHGLRPNMHLTCTNMPLERIESALRRCR 116          
BLAST of mRNA_H-canaliculatus_F_contig13697.2960.1 vs. uniprot
Match: A0A836CIM9_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIM9_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.520e-27
Identity = 51/74 (68.92%), Postives = 57/74 (77.03%), Query Frame = 1
Query:   10 TPQGVKNLMDRLGRMKATKPLFVDFTWGAGGSTADLTLDLTLRTKKEHGLVPNMHLTCTNMPVDKIDNALAKCK 231
            T  GV NL +R+ R+K   P F+DFTWGAGG+TADLTLDL L  K EHGL PNMHLTCTNMPV KIDNAL  C+
Sbjct:   40 TVAGVVNLRERIQRLKRVAPFFIDFTWGAGGNTADLTLDLVLEAKLEHGLEPNMHLTCTNMPVLKIDNALQACR 113          
BLAST of mRNA_H-canaliculatus_F_contig13697.2960.1 vs. uniprot
Match: A0A7S1C6C6_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6C6_9STRA)

HSP 1 Score: 106 bits (265), Expect = 5.880e-26
Identity = 51/74 (68.92%), Postives = 57/74 (77.03%), Query Frame = 1
Query:   10 TPQGVKNLMDRLGRMKATKPLFVDFTWGAGGSTADLTLDLTLRTKKEHGLVPNMHLTCTNMPVDKIDNALAKCK 231
            T  GV NL  RLGRM   +PL+VDFTWGAGGSTADLTL+LT+ +KK  GL PNMHLTCTNMPV+KI  AL   K
Sbjct:   39 TDDGVANLYKRLGRMAQQEPLYVDFTWGAGGSTADLTLELTVESKKRFGLEPNMHLTCTNMPVEKITTALEGAK 112          
BLAST of mRNA_H-canaliculatus_F_contig13697.2960.1 vs. uniprot
Match: A0A7S1ALW9_NOCSC (Methylenetetrahydrofolate reductase (NAD(P)H) (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1ALW9_NOCSC)

HSP 1 Score: 100 bits (250), Expect = 9.430e-25
Identity = 48/74 (64.86%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   10 TPQGVKNLMDRLGRMKATKPLFVDFTWGAGGSTADLTLDLTLRTKKEHGLVPNMHLTCTNMPVDKIDNALAKCK 231
            T +GVKNL  R+ RMK   PLF+DFTWGAGGST+DLT+ L  + K E G V NMHLTCTNM  DK+D ALA CK
Sbjct:   33 TEEGVKNLYKRILRMKTLDPLFLDFTWGAGGSTSDLTMQLCDKVKNEFGAVANMHLTCTNMEKDKVDVALADCK 106          
BLAST of mRNA_H-canaliculatus_F_contig13697.2960.1 vs. uniprot
Match: A0A7S3GGD2_9EUKA (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GGD2_9EUKA)

HSP 1 Score: 100 bits (249), Expect = 1.200e-23
Identity = 45/74 (60.81%), Postives = 57/74 (77.03%), Query Frame = 1
Query:   10 TPQGVKNLMDRLGRMKATKPLFVDFTWGAGGSTADLTLDLTLRTKKEHGLVPNMHLTCTNMPVDKIDNALAKCK 231
            T +GVKNL  R GRMK   P+FVD TWGAGGST+DLT+++  + K E+GL PNMHLTCTNM   K+++AL KC+
Sbjct:   28 TDEGVKNLYARFGRMKEQHPVFVDVTWGAGGSTSDLTVEICEKAKHEYGLEPNMHLTCTNMVPQKVEDALKKCR 101          
BLAST of mRNA_H-canaliculatus_F_contig13697.2960.1 vs. uniprot
Match: A0A7S2W8U0_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W8U0_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.480e-23
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 1
Query:   10 TPQGVKNLMDRLGRMKATKPLFVDFTWGAGGSTADLTLDLTLRTKKEHGLVPNMHLTCTNMPVDKIDNAL 219
            T QGV+NL  RL RM    PL+VDFTWGAGGST+DLTL+L+ + ++++ LV NMHLTCTNMP DK+DNAL
Sbjct:   38 TEQGVENLKKRLARMAEFNPLYVDFTWGAGGSTSDLTLELSQKAQEDNKLVSNMHLTCTNMPKDKLDNAL 107          
BLAST of mRNA_H-canaliculatus_F_contig13697.2960.1 vs. uniprot
Match: W7TUD6_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUD6_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 4.040e-23
Identity = 44/74 (59.46%), Postives = 56/74 (75.68%), Query Frame = 1
Query:   10 TPQGVKNLMDRLGRMKATKPLFVDFTWGAGGSTADLTLDLTLRTKKEHGLVPNMHLTCTNMPVDKIDNALAKCK 231
            TP+GV+ L +RL  M    PLFVDFTWGAGGSTA+LTL+LT+  ++  GL+ NMHLTCTNMP +K+ +AL   K
Sbjct:   42 TPEGVEKLYERLAEMAPYNPLFVDFTWGAGGSTAELTLELTIEARRRFGLIANMHLTCTNMPTEKVVDALKSAK 115          
BLAST of mRNA_H-canaliculatus_F_contig13697.2960.1 vs. uniprot
Match: A0A7S1FBX8_NOCSC (Multifunctional fusion protein (Fragment) n=2 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FBX8_NOCSC)

HSP 1 Score: 100 bits (250), Expect = 4.090e-23
Identity = 48/74 (64.86%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   10 TPQGVKNLMDRLGRMKATKPLFVDFTWGAGGSTADLTLDLTLRTKKEHGLVPNMHLTCTNMPVDKIDNALAKCK 231
            T +GVKNL  R+ RMK   PLF+DFTWGAGGST+DLT+ L  + K E G V NMHLTCTNM  DK+D ALA CK
Sbjct:   33 TEEGVKNLYKRILRMKTLDPLFLDFTWGAGGSTSDLTMQLCDKVKNEFGAVANMHLTCTNMEKDKVDVALADCK 106          
BLAST of mRNA_H-canaliculatus_F_contig13697.2960.1 vs. uniprot
Match: A0A6V1V0A8_HETAK (Methylenetetrahydrofolate reductase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1V0A8_HETAK)

HSP 1 Score: 100 bits (250), Expect = 4.110e-23
Identity = 46/74 (62.16%), Postives = 60/74 (81.08%), Query Frame = 1
Query:   10 TPQGVKNLMDRLGRMKATKPLFVDFTWGAGGSTADLTLDLTLRTKKEHGLVPNMHLTCTNMPVDKIDNALAKCK 231
            T +GV+NL++R+ RMK+  PLFVDFTWGAGGST++LTLDL+L+ ++E G+  NMHLTCTNM   K+D AL  CK
Sbjct:   31 TAKGVENLVERIQRMKSIDPLFVDFTWGAGGSTSELTLDLSLKAQQEIGVQANMHLTCTNMEAAKVDAALEGCK 104          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13697.2960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JB66_9PHAE2.250e-3990.54Methylenetetrahydrofolate reductase (NAD(P)H) n=2 ... [more]
A0A836C869_9STRA1.680e-2767.57Methylenetetrahydrofolate reductase (NAD(P)H) n=1 ... [more]
A0A836CIM9_9STRA3.520e-2768.92Methylenetetrahydrofolate reductase (NAD(P)H) n=1 ... [more]
A0A7S1C6C6_9STRA5.880e-2668.92Methylenetetrahydrofolate reductase (NAD(P)H) n=1 ... [more]
A0A7S1ALW9_NOCSC9.430e-2564.86Methylenetetrahydrofolate reductase (NAD(P)H) (Fra... [more]
A0A7S3GGD2_9EUKA1.200e-2360.81Methylenetetrahydrofolate reductase (NAD(P)H) n=1 ... [more]
A0A7S2W8U0_9STRA1.480e-2365.71Methylenetetrahydrofolate reductase (NAD(P)H) n=1 ... [more]
W7TUD6_9STRA4.040e-2359.46Methylenetetrahydrofolate reductase (NAD(P)H) n=2 ... [more]
A0A7S1FBX8_NOCSC4.090e-2364.86Multifunctional fusion protein (Fragment) n=2 Tax=... [more]
A0A6V1V0A8_HETAK4.110e-2362.16Methylenetetrahydrofolate reductase n=1 Tax=Hetero... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13697contigH-canaliculatus_F_contig13697:188..418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue2.8e-32
Seed eggNOG ortholog2880.D8LCN9
KEGG rclassRC00081
KEGG koko:K00297
KEGG ReactionR01224,R07168
KEGG Pathwayko00670,ko00720,ko01100,ko01120,ko01200,ko01523,map00670,map00720,map01100,map01120,map01200,map01523
KEGG ModuleM00377
EggNOG free text desc.methylenetetrahydrofolate reductase (NAD(P)H) activity
EggNOG OGsCOG0685@1,KOG0564@2759
EC1.5.1.20
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929109.9040122-CDS-H-canaliculatus_F_contig13697:187..4181622929109.9040122-CDS-H-canaliculatus_F_contig13697:187..418Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13697 188..418 -
1696845682.3385592-CDS-H-canaliculatus_F_contig13697:187..4181696845682.3385592-CDS-H-canaliculatus_F_contig13697:187..418Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13697 188..418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13697.2960.1prot_H-canaliculatus_F_contig13697.2960.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13697 188..418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13697.2960.1

>prot_H-canaliculatus_F_contig13697.2960.1 ID=prot_H-canaliculatus_F_contig13697.2960.1|Name=mRNA_H-canaliculatus_F_contig13697.2960.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=77bp
MHVTPQGVKNLMDRLGRMKATKPLFVDFTWGAGGSTADLTLDLTLRTKKE
HGLVPNMHLTCTNMPVDKIDNALAKCK
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mRNA from alignment at H-canaliculatus_F_contig13697:188..418-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13697.2960.1 ID=mRNA_H-canaliculatus_F_contig13697.2960.1|Name=mRNA_H-canaliculatus_F_contig13697.2960.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=231bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13697:188..418- (Hapterophycus canaliculatus Oshoro5f female)
ATGCATGTAACACCCCAGGGCGTCAAAAACCTCATGGACCGCCTGGGCCG CATGAAGGCCACTAAGCCTCTCTTCGTGGACTTCACGTGGGGCGCGGGGG GCAGCACGGCCGACCTCACCCTGGACCTTACCCTGAGGACCAAGAAGGAG CACGGCCTGGTGCCCAACATGCACCTCACGTGCACCAACATGCCCGTGGA CAAGATAGACAACGCCCTGGCGAAGTGTAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13697:188..418-

>mRNA_H-canaliculatus_F_contig13697.2960.1 ID=mRNA_H-canaliculatus_F_contig13697.2960.1|Name=mRNA_H-canaliculatus_F_contig13697.2960.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=462bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13697:188..418- (Hapterophycus canaliculatus Oshoro5f female)
ATGCATGTAACACCCCAGGGCGTCAAAAACCTCATGGACCGCCTGGGCCG
CATGAAGGCCACTAAGCCTCTCTTCGTGGACTTCACGTGGGGCGCGGGGG
GCAGCACGGCCGACCTCACCCTGGACCTTACCCTGAGGACCAAGAAGGAG
CACGGCCTGGTGCCCAACATGCACCTCACGTGCACCAACATGCCCGTGGA
CAAGATAGACAACGCCCTGGCGAAGTGTAAGATGCATGTAACACCCCAGG
GCGTCAAAAACCTCATGGACCGCCTGGGCCGCATGAAGGCCACTAAGCCT
CTCTTCGTGGACTTCACGTGGGGCGCGGGGGGCAGCACGGCCGACCTCAC
CCTGGACCTTACCCTGAGGACCAAGAAGGAGCACGGCCTGGTGCCCAACA
TGCACCTCACGTGCACCAACATGCCCGTGGACAAGATAGACAACGCCCTG
GCGAAGTGTAAG
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