mRNA_H-canaliculatus_F_contig1369.2958.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1369.2958.1
Unique NamemRNA_H-canaliculatus_F_contig1369.2958.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1369.2958.1 vs. uniprot
Match: D7FHP4_ECTSI (AP-1 complex subunit gamma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHP4_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 2.010e-52
Identity = 92/101 (91.09%), Postives = 94/101 (93.07%), Query Frame = 1 
Query:    1 GYPSHFGQMECIKLITSSNYMDKRIGYLGLTLLLTDQEEVLMLVTNSLKVDLHSENMFVVGLSLTTVGNLSTPDIARDLMMEVEKHLRGARPYLVKKVWRC 303
            GYPSHFGQMECIKLITS NYMDKRIGYLGLTLLLTDQEEVLMLVTNSLKVD+HS NMFV GLSLTTVGNL+TPDIARDLMMEVEKHLRG RPYLVKK   C
Sbjct:   58 GYPSHFGQMECIKLITSPNYMDKRIGYLGLTLLLTDQEEVLMLVTNSLKVDMHSSNMFVAGLSLTTVGNLATPDIARDLMMEVEKHLRGGRPYLVKKAALC 158
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BLAST of mRNA_H-canaliculatus_F_contig1369.2958.1 vs. uniprot
Match: A0A836CEJ3_9STRA (AP-1 complex subunit gamma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEJ3_9STRA)

HSP 1 Score: 155 bits (391), Expect = 9.450e-42
Identity = 77/101 (76.24%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:    1 GYPSHFGQMECIKLITSSNYMDKRIGYLGLTLLLTDQEEVLMLVTNSLKVDLHSENMFVVGLSLTTVGNLSTPDIARDLMMEVEKHLRGARPYLVKKVWRC 303
            GYPSHFGQMECIKLITS  + DKRIGYLGL LLLT++EEVLMLVTNSLKVDL+S+N FVVGL+LTTVGNL+TPDIARDLMM+V+++L+   PYL KK   C
Sbjct:   58 GYPSHFGQMECIKLITSPEFTDKRIGYLGLMLLLTEKEEVLMLVTNSLKVDLNSQNPFVVGLALTTVGNLATPDIARDLMMDVDRYLQSNNPYLRKKAALC 158
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BLAST of mRNA_H-canaliculatus_F_contig1369.2958.1 vs. uniprot
Match: A0A485KG16_9STRA (AP-1 complex subunit gamma n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KG16_9STRA)

HSP 1 Score: 142 bits (358), Expect = 2.790e-37
Identity = 69/97 (71.13%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:    1 GYPSHFGQMECIKLITSSNYMDKRIGYLGLTLLLTDQEEVLMLVTNSLKVDLHSENMFVVGLSLTTVGNLSTPDIARDLMMEVEKHLRGARPYLVKK 291
            GYPSHFGQMEC+KLI +SN+ +KRIGYLGL LLLTDQEEVLMLVTNSLK DL+  N FVVGLSLT VGN+++PD+ARDL+ +++KHL+    YL KK
Sbjct:   58 GYPSHFGQMECLKLIAASNFSEKRIGYLGLMLLLTDQEEVLMLVTNSLKNDLNHSNPFVVGLSLTAVGNIASPDMARDLITDIDKHLKSENNYLRKK 154
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BLAST of mRNA_H-canaliculatus_F_contig1369.2958.1 vs. uniprot
Match: A0A425C4M0_9STRA (Adaptin_N domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425C4M0_9STRA)

HSP 1 Score: 136 bits (342), Expect = 3.970e-37
Identity = 66/97 (68.04%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    1 GYPSHFGQMECIKLITSSNYMDKRIGYLGLTLLLTDQEEVLMLVTNSLKVDLHSENMFVVGLSLTTVGNLSTPDIARDLMMEVEKHLRGARPYLVKK 291
            GYPSHFGQMEC+KLI ++N+ +KRIGYLGL LLLTDQEEVL LVTNSLK DL+  N FVVGLSLT VGN+++PD+ARDL+ +++KHL+    +L KK
Sbjct:   58 GYPSHFGQMECLKLIAANNFSEKRIGYLGLMLLLTDQEEVLTLVTNSLKNDLNHVNPFVVGLSLTAVGNIASPDMARDLITDIDKHLKSDNHFLRKK 154
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1369.2958.1 vs. uniprot
Match: A0A397DE85_9STRA (Adaptin_N domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DE85_9STRA)

HSP 1 Score: 136 bits (342), Expect = 6.350e-37
Identity = 66/97 (68.04%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    1 GYPSHFGQMECIKLITSSNYMDKRIGYLGLTLLLTDQEEVLMLVTNSLKVDLHSENMFVVGLSLTTVGNLSTPDIARDLMMEVEKHLRGARPYLVKK 291
            GYPSHFGQMEC+KLI ++N+ +KRIGYLGL LLLTDQEEVL LVTNSLK DL+  N FVVGLSLT VGN+++PD+ARDL+ +++KHL+    +L KK
Sbjct:   58 GYPSHFGQMECLKLIAANNFSEKRIGYLGLMLLLTDQEEVLTLVTNSLKNDLNHVNPFVVGLSLTAVGNIASPDMARDLITDIDKHLKSDNHFLRKK 154
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1369.2958.1 vs. uniprot
Match: A0A6G0WMQ6_9STRA (AP-1 complex subunit gamma n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WMQ6_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.820e-36
Identity = 68/97 (70.10%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    1 GYPSHFGQMECIKLITSSNYMDKRIGYLGLTLLLTDQEEVLMLVTNSLKVDLHSENMFVVGLSLTTVGNLSTPDIARDLMMEVEKHLRGARPYLVKK 291
            GYPSHFGQMEC+KLI +SN+ +KRIGYLGL LLLTDQEEVL LVTNSLK DL+  N FVVGLSLT VGN+++PD+ARDL+ +++KHL+    YL KK
Sbjct:   58 GYPSHFGQMECLKLIAASNFSEKRIGYLGLMLLLTDQEEVLTLVTNSLKNDLNHSNPFVVGLSLTAVGNIASPDMARDLITDIDKHLKSENNYLRKK 154
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BLAST of mRNA_H-canaliculatus_F_contig1369.2958.1 vs. uniprot
Match: A0A397F0B5_9STRA (Adaptin_N domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F0B5_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.010e-35
Identity = 66/97 (68.04%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    1 GYPSHFGQMECIKLITSSNYMDKRIGYLGLTLLLTDQEEVLMLVTNSLKVDLHSENMFVVGLSLTTVGNLSTPDIARDLMMEVEKHLRGARPYLVKK 291
            GYPSHFGQMEC+KLI ++N+ +KRIGYLGL LLLTDQEEVL LVTNSLK DL+  N FVVGLSLT VGN+++PD+ARDL+ +++KHL+    +L KK
Sbjct:   58 GYPSHFGQMECLKLIAANNFSEKRIGYLGLMLLLTDQEEVLTLVTNSLKNDLNHVNPFVVGLSLTAVGNIASPDMARDLITDIDKHLKSDNHFLRKK 154
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1369.2958.1 vs. uniprot
Match: K8YRB5_NANGC (AP-1 complex subunit gamma-1 (Fragment) n=3 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YRB5_NANGC)

HSP 1 Score: 137 bits (345), Expect = 1.030e-35
Identity = 68/97 (70.10%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    1 GYPSHFGQMECIKLITSSNYMDKRIGYLGLTLLLTDQEEVLMLVTNSLKVDLHSENMFVVGLSLTTVGNLSTPDIARDLMMEVEKHLRGARPYLVKK 291
            GYPSHFGQMEC+KLI S ++ +KRIGYLGL+LLLT+QEEVL LVTNS+K DL+S N FVVGL+L+ VGNL+T DIARDL M+V+KHL+    YL KK
Sbjct:   64 GYPSHFGQMECLKLIASPHFFEKRIGYLGLSLLLTEQEEVLTLVTNSIKNDLNSPNPFVVGLALSAVGNLATEDIARDLAMDVDKHLKSNNSYLRKK 160
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1369.2958.1 vs. uniprot
Match: W7TQP3_9STRA (AP-1 complex subunit gamma n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQP3_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.640e-35
Identity = 68/97 (70.10%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    1 GYPSHFGQMECIKLITSSNYMDKRIGYLGLTLLLTDQEEVLMLVTNSLKVDLHSENMFVVGLSLTTVGNLSTPDIARDLMMEVEKHLRGARPYLVKK 291
            GYPSHFGQMEC+KLI S ++ +KRIGYLGL+LLLT+QEEVL LVTNS+K DL+S N FVVGL+L+ VGNL+T DIARDL M+V+KHL+    YL KK
Sbjct:   58 GYPSHFGQMECLKLIASPHFFEKRIGYLGLSLLLTEQEEVLTLVTNSIKNDLNSPNPFVVGLALSAVGNLATEDIARDLAMDVDKHLKSNNSYLRKK 154
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1369.2958.1 vs. uniprot
Match: A0A1V9YXT6_9STRA (AP-1 complex subunit gamma n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YXT6_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.950e-35
Identity = 66/97 (68.04%), Postives = 81/97 (83.51%), Query Frame = 1 
Query:    1 GYPSHFGQMECIKLITSSNYMDKRIGYLGLTLLLTDQEEVLMLVTNSLKVDLHSENMFVVGLSLTTVGNLSTPDIARDLMMEVEKHLRGARPYLVKK 291
            GYPSHFGQMEC+KLI ++N+ +KRIGYLGL LLL DQEEVL LVTNSLK DL+  N FVVGLSLT VGN+++PD+ARDL+ +++KHL+    YL KK
Sbjct:   58 GYPSHFGQMECLKLIAANNFSEKRIGYLGLMLLLNDQEEVLTLVTNSLKNDLNHVNPFVVGLSLTAVGNIASPDMARDLITDIDKHLKSENDYLRKK 154
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1369.2958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHP4_ECTSI2.010e-5291.09AP-1 complex subunit gamma n=2 Tax=Ectocarpus TaxI... [more]
A0A836CEJ3_9STRA9.450e-4276.24AP-1 complex subunit gamma n=1 Tax=Tribonema minus... [more]
A0A485KG16_9STRA2.790e-3771.13AP-1 complex subunit gamma n=1 Tax=Aphanomyces ste... [more]
A0A425C4M0_9STRA3.970e-3768.04Adaptin_N domain-containing protein n=1 Tax=Aphano... [more]
A0A397DE85_9STRA6.350e-3768.04Adaptin_N domain-containing protein n=2 Tax=Aphano... [more]
A0A6G0WMQ6_9STRA1.820e-3670.10AP-1 complex subunit gamma n=1 Tax=Aphanomyces eut... [more]
A0A397F0B5_9STRA1.010e-3568.04Adaptin_N domain-containing protein (Fragment) n=1... [more]
K8YRB5_NANGC1.030e-3570.10AP-1 complex subunit gamma-1 (Fragment) n=3 Tax=Na... [more]
W7TQP3_9STRA1.640e-3570.10AP-1 complex subunit gamma n=3 Tax=Monodopsidaceae... [more]
A0A1V9YXT6_9STRA2.950e-3568.04AP-1 complex subunit gamma n=3 Tax=Saprolegniaceae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1369contigH-canaliculatus_F_contig1369:695..1584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.5
Seed ortholog evalue2.4e-38
Seed eggNOG ortholog2880.D7FHP4
KEGG koko:K11279,ko:K12391
KEGG Pathwayko04142,map04142
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG4354@1,KOG1062@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1369.2958.1prot_H-canaliculatus_F_contig1369.2958.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1369 695..1560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929109.0721138-CDS-H-canaliculatus_F_contig1369:694..8501622929109.0721138-CDS-H-canaliculatus_F_contig1369:694..850Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1369 695..850 -
1696845682.290198-CDS-H-canaliculatus_F_contig1369:694..8501696845682.290198-CDS-H-canaliculatus_F_contig1369:694..850Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1369 695..850 -
1622929109.088547-CDS-H-canaliculatus_F_contig1369:1437..15601622929109.088547-CDS-H-canaliculatus_F_contig1369:1437..1560Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1369 1438..1560 -
1696845682.3015764-CDS-H-canaliculatus_F_contig1369:1437..15601696845682.3015764-CDS-H-canaliculatus_F_contig1369:1437..1560Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1369 1438..1560 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929109.103897-UTR-H-canaliculatus_F_contig1369:1560..15841622929109.103897-UTR-H-canaliculatus_F_contig1369:1560..1584Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1369 1561..1584 -
1696845682.3115213-UTR-H-canaliculatus_F_contig1369:1560..15841696845682.3115213-UTR-H-canaliculatus_F_contig1369:1560..1584Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1369 1561..1584 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1369.2958.1

>prot_H-canaliculatus_F_contig1369.2958.1 ID=prot_H-canaliculatus_F_contig1369.2958.1|Name=mRNA_H-canaliculatus_F_contig1369.2958.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=93bp
MECIKLITSSNYMDKRIGYLGLTLLLTDQEEVLMLVTNSLKVDLHSENMF
VVGLSLTTVGNLSTPDIARDLMMEVEKHLRGARPYLVKKVWRC
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mRNA from alignment at H-canaliculatus_F_contig1369:695..1584-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1369.2958.1 ID=mRNA_H-canaliculatus_F_contig1369.2958.1|Name=mRNA_H-canaliculatus_F_contig1369.2958.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=890bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1369:695..1584- (Hapterophycus canaliculatus Oshoro5f female)
GGCTACCCGTCGCACTTCGGCCAGATGGAGTGTATCAAGCTCATCACGTC
TTCTAACTACATGGACAAGCGAATCGGATACCTAGGGCTGACCCTGCTCC
TCACGGACCAGGAGGAGGTGCTGATGCTCGTCACCAATTCCCTCAAGGTG
GGGTATCTATCGTGCGTGACGCTTGAAAGCATCATCCCTTCACCCGGCCC
CCGTACCTCATACGACGCTCGGTGATCAGCCGCTCCTGAAACCTTTGGAT
GCCGTTCGGCGATGCTAGTGGCGTTCTAGCAAAATATCTCCTATTAATAT
TAGCTTTCTTTGGGGCTGCCTTGATCGTGTGGCCTCTTAGCCTTTCCAAG
TGTAAGCCGTGTTCCAAATGACCAACCCGTCACTATCACCGTCGCCTTCA
CCACCACCGCACCACCGCCACCACCACAACCACTCCCAACATGATAGGGG
AATGTTGCTCAACAACTTGGTACCAAGATAACAACAGCTACCGTAGCAAG
AAGTTATCCGAGACCATCCCTGCCACTTCGTCCGCGTTAGCCAGACGAAT
GACAGCAACAGCTTTTGTGGCGACCTCAGGGAATCATAAGCATGCAAGGA
CTAATCCGGTGCCGCCACTGATGCCTCGTCCGCTTTCGCTAGACGAACAT
GGCAATAGCAAGAAGGGCACCTACCACTACGAGGACTCATCCGGCGCTAA
CGCTGCCGCCGCCGCCTCACCCACTCGCACGCAGGTGGACTTGCACAGCG
AAAATATGTTCGTGGTCGGGCTCAGCTTGACCACGGTGGGAAACCTGTCC
ACCCCTGACATCGCCCGAGATCTGATGATGGAGGTGGAGAAGCACCTCCG
GGGAGCAAGGCCGTACCTTGTCAAGAAGGTATGGCGGTGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1369:695..1584-

>mRNA_H-canaliculatus_F_contig1369.2958.1 ID=mRNA_H-canaliculatus_F_contig1369.2958.1|Name=mRNA_H-canaliculatus_F_contig1369.2958.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=558bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1369:695..1584- (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGTGTATCAAGCTCATCACGTCTTCTAACTACATGGACAAGCGAAT
CGGATACCTAGGGCTGACCCTGCTCCTCACGGACCAGGAGGAGGTGCTGA
TGCTCGTCACCAATTCCCTCAAGATGGAGTGTATCAAGCTCATCACGTCT
TCTAACTACATGGACAAGCGAATCGGATACCTAGGGCTGACCCTGCTCCT
CACGGACCAGGAGGAGGTGCTGATGCTCGTCACCAATTCCCTCAAGGTGG
ACTTGCACAGCGAAAATATGTTCGTGGTCGGGCTCAGCTTGACCACGGTG
GGAAACCTGTCCACCCCTGACATCGCCCGAGATCTGATGATGGAGGTGGA
GAAGCACCTCCGGGGAGCAAGGCCGTACCTTGTCAAGAAGGTATGGCGGT
GCGTGGACTTGCACAGCGAAAATATGTTCGTGGTCGGGCTCAGCTTGACC
ACGGTGGGAAACCTGTCCACCCCTGACATCGCCCGAGATCTGATGATGGA
GGTGGAGAAGCACCTCCGGGGAGCAAGGCCGTACCTTGTCAAGAAGGTAT
GGCGGTGC
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