mRNA_H-canaliculatus_F_contig13280.2683.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13280.2683.1
Unique NamemRNA_H-canaliculatus_F_contig13280.2683.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig13280.2683.1 vs. uniprot
Match: A0A6H5KCD9_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD9_9PHAE)

HSP 1 Score: 339 bits (870), Expect = 1.070e-105
Identity = 175/216 (81.02%), Postives = 184/216 (85.19%), Query Frame = 1
Query:    1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGAGEEVPVQNTQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGAATSNGRAPKWHRRPAGASFAFGGRLTR----------AHAHTXXXXXXXG-----TVKISSVKEDAAFVSASRRFEEAMASKGFRGFCQEKEDAAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETVAR 603
            DASLLMSCAKDNRTLLWDLFSLKPVYELPPG G E+P +N QMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGA+TSNGRAPKWHRRPAGASFAFGGRL             +A         G     TVKISSVKEDAAFV+ASRRFEEAMA++GFRGFCQEKE +AATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETVA+
Sbjct:  292 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGGGAELPQENAQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGASTSNGRAPKWHRRPAGASFAFGGRLVSFSATGGDAAAGNAAVGQQGATAGGGGSKTVKISSVKEDAAFVAASRRFEEAMATQGFRGFCQEKEASAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETVAK 507          
BLAST of mRNA_H-canaliculatus_F_contig13280.2683.1 vs. uniprot
Match: A0A7S2XZL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZL8_9STRA)

HSP 1 Score: 216 bits (551), Expect = 5.500e-64
Identity = 112/208 (53.85%), Postives = 140/208 (67.31%), Query Frame = 1
Query:    1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGAGEEVPVQNTQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGAATSNGRAPKWHRRPAGASFAFGGRLTRAHAHTXXXXXXXGT-------VKISSVKEDAAFVSASRRFEEAMASKGFRGFCQEKEDAAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETVAR 603
            D SL++SC KDNRTLLWDLF L+ VYELP  +  +      +MFGG   +AQRRY V+WSP+IPAVVS CSFDRKVQ++SM+GA  S+GRAPKW  RP GA+F FGG+L              G         K++ V E+   V+AS +FE+AM SK F+G+C+ K   A T +E +VWQFMQVIFEKNAR  LL HLGFD E +A+
Sbjct:  282 DPSLVLSCGKDNRTLLWDLFRLEAVYELPSMSKSKAAGGTGEMFGGIASSAQRRYHVAWSPNIPAVVSCCSFDRKVQVYSMSGAKASSGRAPKWLSRPVGATFGFGGKLLSFGQSGADQSSTPGAPRTGPKHFKVTQVVENPDLVAASTKFEQAMLSKNFKGYCEAKVAEAKTPYEAKVWQFMQVIFEKNARAILLCHLGFDAEAIAK 489          
BLAST of mRNA_H-canaliculatus_F_contig13280.2683.1 vs. uniprot
Match: A0A7S1C338_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C338_9STRA)

HSP 1 Score: 186 bits (472), Expect = 1.170e-55
Identity = 92/200 (46.00%), Postives = 127/200 (63.50%), Query Frame = 1
Query:    1 DASLLMSCAKDNRTLLWDLFSLKPVYELP-PGAGEEVPVQNTQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGAATSNGRAPKWHRRPAGASFAFGGRLTRAHAHTXXXXXXXGTVKISSVKEDAAFVSASRRFEEAMASKGFRGFCQEKEDAAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETV 597
            DA +L++C KDNRTLLWDL+ ++ +Y++P   AG E       M+GG G + Q+RY V WSP +  V STCSFDRKVQ  S+NGA T +GR PKW +RP+G +F FGG+     A           +++  V ED    +AS  F+ A+ S   RG C  K  AAATAHE +VW F++++FE++AR +LL HLGFD + +
Sbjct:    4 DAGMLLTCGKDNRTLLWDLYKMESIYDIPNEDAGREPAEDARGMYGGLGSSQQKRYDVQWSPLLRGVASTCSFDRKVQCHSLNGAFTLSGRPPKWTQRPSGVAFGFGGQCVSFAADAP-------VLQVRKVVEDEPLAAASAEFDRALDSGDLRGLCASKSAAAATAHEAQVWSFLRILFEEDARAELLTHLGFDAKEI 196          
BLAST of mRNA_H-canaliculatus_F_contig13280.2683.1 vs. uniprot
Match: A0A7S2R415_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R415_9STRA)

HSP 1 Score: 190 bits (483), Expect = 3.530e-54
Identity = 102/203 (50.25%), Postives = 130/203 (64.04%), Query Frame = 1
Query:    1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGAGEEVPVQNTQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGAATSNGRAPKWHRRPAGASFAFGGRL-TRAHAHTXXXXXXXGTVKISSVKEDAAFVSASRRFEEAMASKGFRGFCQEKEDAAATA---HERRVWQFMQVIFEKNARNQLLAHLGFDGETV 597
            D SLL+SC KDNRT LWDL   +PVYEL        P      FGG+G    RRY+VSWSP +PAV+STCSFDRKV ++SM+G  +   +APKW RRP GASF FGG+L T +             VK+SSV ED++ V  SR FE+ M  K FRG C +K  AA  A   HE++VW+F+++IFE +AR +LL  LGF+ E +
Sbjct:  282 DTSLLLSCGKDNRTFLWDLCDCRPVYELQAAPTATAPSGG---FGGFGSAFGRRYEVSWSPKLPAVLSTCSFDRKVHVYSMSGTKSQATQAPKWLRRPVGASFGFGGKLVTFSSPPGKPGQRVPQVVKVSSVVEDSSIVQVSRAFEQRMGQKDFRGICNDKAAAAEAAGDEHEKQVWEFIKLIFEDDARAKLLDKLGFNAEEI 481          
BLAST of mRNA_H-canaliculatus_F_contig13280.2683.1 vs. uniprot
Match: M4B6P5_HYAAE (Sec16_C domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6P5_HYAAE)

HSP 1 Score: 179 bits (454), Expect = 7.520e-49
Identity = 96/202 (47.52%), Postives = 121/202 (59.90%), Query Frame = 1
Query:    1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGAGEEVPVQNTQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGAATSNGRAPKWHRRPAGASFAFGGRLT---RAHAHTXXXXXXXGTVKISSVKEDAAFVSASRRFEEAMASKGFRGFCQEKEDAAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETV 597
            D  LL+SC KDNRTLLWDLFS K V ELP  A +   + + Q FGG     QRR+ V WSP IPAV STCS D KVQ++S+ G    + R PKW RRPAGASF FGG+L         T         V +  V  D   V+ +   + ++ +K FRG+C++K   AAT  ER VW FM+++FEK+AR  LL HLG D E +
Sbjct:  287 DPGLLLSCGKDNRTLLWDLFSRKTVAELPSDAPDAPAMGSDQFFGGV-LAGQRRWNVQWSPQIPAVASTCSLDGKVQIWSLAGGGNPDCRPPKWMRRPAGASFGFGGKLVTIANPQEATSHNGDHRRLVHMQRVIGDTRLVAEAEALDRSLDTKDFRGYCEQKIATAATGEERSVWSFMKILFEKDARQHLLLHLGLDAEKI 487          
BLAST of mRNA_H-canaliculatus_F_contig13280.2683.1 vs. uniprot
Match: A0A2P4XIT7_9STRA (Protein transporter Sec31A (Fragment) n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XIT7_9STRA)

HSP 1 Score: 175 bits (444), Expect = 1.290e-48
Identity = 92/203 (45.32%), Postives = 121/203 (59.61%), Query Frame = 1
Query:    1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGAGEEVPVQNTQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGAATSNGRAPKWHRRPAGASFAFGGRLTRAHAHTXXXXXXXGT----VKISSVKEDAAFVSASRRFEEAMASKGFRGFCQEKEDAAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETV 597
            D  L++SC KDNRTLLWDLFS K V E P  A    P+ + Q FGG G   QRR+ V WSP +PAV STC+ D KVQ++ ++G      R PKW RRP GASF FGG+L    A+        G     + +  V  D   V  +   + ++ +K F+G C++K  +AATA ER VW FM+++FEK+AR  LL HLG D E +
Sbjct:  286 DPGLILSCGKDNRTLLWDLFSRKTVVEFPSDAPNAPPMGSDQFFGG-GLAGQRRWNVQWSPQVPAVASTCTLDGKVQIWGLSGGGNPACRPPKWMRRPVGASFGFGGKLVTI-ANPQEPAAPNGDHRRLIHMQRVISDTGLVVEAEALDRSLETKDFKGHCEQKIASAATAEERSVWSFMKILFEKDARQHLLLHLGLDAEKI 486          
BLAST of mRNA_H-canaliculatus_F_contig13280.2683.1 vs. uniprot
Match: H3GVL6_PHYRM (Sec16_C domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=H3GVL6_PHYRM)

HSP 1 Score: 175 bits (444), Expect = 3.850e-47
Identity = 93/203 (45.81%), Postives = 122/203 (60.10%), Query Frame = 1
Query:    1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGAGEEVPVQNTQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGAATSNGRAPKWHRRPAGASFAFGGRLTRAHAHTXXXXXXXGT----VKISSVKEDAAFVSASRRFEEAMASKGFRGFCQEKEDAAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETV 597
            D  LL+SC KDNRTLLWDLFS K V E P  A     + + Q FGG G   QRR+ V WSP +PAV STCS D K+Q++ ++G      R PKW RRPAGASF FGG+L    A+        G     + +  V  D   V+ +   + ++ +K F+G C++K  +AATA ER VW FM+++FEK+AR  LL HLG D E +
Sbjct:  286 DPGLLLSCGKDNRTLLWDLFSRKTVAEFPSDAPNAPSMGSDQFFGG-GLAGQRRWNVQWSPQVPAVASTCSLDGKLQIWGLSGGGNPACRPPKWMRRPAGASFGFGGKLVTI-ANPQEPAAPNGDNRRLIHMQRVISDTGLVAEAEALDRSLETKDFKGHCEQKIASAATAEERSVWSFMKILFEKDARQHLLLHLGLDAEKI 486          
BLAST of mRNA_H-canaliculatus_F_contig13280.2683.1 vs. uniprot
Match: A0A662WHK5_9STRA (Sec16_C domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WHK5_9STRA)

HSP 1 Score: 174 bits (441), Expect = 9.640e-47
Identity = 92/203 (45.32%), Postives = 122/203 (60.10%), Query Frame = 1
Query:    1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGAGEEVPVQNTQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGAATSNGRAPKWHRRPAGASFAFGGRLTRAHAHTXXXXXXXGT----VKISSVKEDAAFVSASRRFEEAMASKGFRGFCQEKEDAAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETV 597
            D  LL+SC KDNRTLLWDLFS K V E P  A     + + Q FGG G   QRR+ V WSP +PAV STC+ D KVQ++ ++G      R PKW RRPAGASF FGG+L    A+        G     + +  V  +A  V+ +   + ++ +K F+G C++K   AA A+ER VW FM+++FEK+AR  LL HLG D E +
Sbjct:  286 DPGLLLSCGKDNRTLLWDLFSRKTVVEFPSDAPNAPAMGSDQFFGG-GLAGQRRWNVQWSPQVPAVASTCTLDGKVQIWGLSGGGNPECRPPKWMRRPAGASFGFGGKLVTI-ANPQEPVAPNGDRRRLIHMHRVVSEAPLVAEAEALDRSLETKDFKGHCEQKIATAANANERSVWSFMKILFEKDARQHLLLHLGLDAEKI 486          
BLAST of mRNA_H-canaliculatus_F_contig13280.2683.1 vs. uniprot
Match: A0A0P1A449_PLAHL (Vesicle coat complex COPII, subunit SEC31 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A449_PLAHL)

HSP 1 Score: 173 bits (439), Expect = 1.750e-46
Identity = 88/202 (43.56%), Postives = 119/202 (58.91%), Query Frame = 1
Query:    1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGAGEEVPVQNTQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGAATSNGRAPKWHRRPAGASFAFGGRL---TRAHAHTXXXXXXXGTVKISSVKEDAAFVSASRRFEEAMASKGFRGFCQEKEDAAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETV 597
            D  L++S  KDNRTLLWDLFS K + E P       P   +  F G G   QRR+ V WSP +PAV STCS D K+Q++ ++G    + R PKW RRPAGASF FGG+L   T +             + +  V  D A V+ +   + ++ SK F+G+C++K  +A TA ER VW FM+++FEK+AR  LL HLG D E +
Sbjct:    7 DPGLILSSGKDNRTLLWDLFSRKTIIEFP-SESPNAPTMGSDHFFGGGLAGQRRWNVQWSPQVPAVASTCSLDGKLQIWGLSGGGNPDCRPPKWMRRPAGASFGFGGKLVIATNSQETLALNGDHSRLIHMQRVISDPALVAEAENLDRSLESKDFKGYCEQKIASATTAEERSVWSFMKILFEKDARQHLLLHLGLDAEKI 207          
BLAST of mRNA_H-canaliculatus_F_contig13280.2683.1 vs. uniprot
Match: A0A421FTT1_9STRA (Sec16_C domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A421FTT1_9STRA)

HSP 1 Score: 172 bits (437), Expect = 3.280e-46
Identity = 91/203 (44.83%), Postives = 123/203 (60.59%), Query Frame = 1
Query:    1 DASLLMSCAKDNRTLLWDLFSLKPVYELPPGAGEEVPVQNTQMFGGYGKTAQRRYQVSWSPHIPAVVSTCSFDRKVQLFSMNGAATSNGRAPKWHRRPAGASFAFGGRLTRAHAHTXXXXXXXGTVK----ISSVKEDAAFVSASRRFEEAMASKGFRGFCQEKEDAAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETV 597
            D  L++SC KDNRTLLWDLFS K V E P  A     + + Q FGG G   QRR+ V WS  IPAV STC+ D K+Q++ ++G      R PKW RRPAGASF FGG+L  A A+          ++    +  V  D   V+ +   + ++ +K F+G+C++K  AAA A+ER VW FM+++FEK+AR  LL HLG D E +
Sbjct:  286 DPGLILSCGKDNRTLLWDLFSRKTVTEFPSDAPNAPAMGSDQFFGG-GLAGQRRWNVQWSAQIPAVASTCTLDGKLQIWGLSGGGNPACRPPKWMRRPAGASFGFGGKLV-AIANPQEPAGPNADIRRLIHVQRVVSDLGLVAEAEALDRSLETKDFKGYCEQKIAAAANANERSVWSFMKILFEKDARQHLLLHLGLDAEKI 486          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13280.2683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCD9_9PHAE1.070e-10581.02WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S2XZL8_9STRA5.500e-6453.85Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1C338_9STRA1.170e-5546.00Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S2R415_9STRA3.530e-5450.25Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
M4B6P5_HYAAE7.520e-4947.52Sec16_C domain-containing protein n=1 Tax=Hyaloper... [more]
A0A2P4XIT7_9STRA1.290e-4845.32Protein transporter Sec31A (Fragment) n=2 Tax=Phyt... [more]
H3GVL6_PHYRM3.850e-4745.81Sec16_C domain-containing protein n=11 Tax=Phytoph... [more]
A0A662WHK5_9STRA9.640e-4745.32Sec16_C domain-containing protein n=2 Tax=Nothophy... [more]
A0A0P1A449_PLAHL1.750e-4643.56Vesicle coat complex COPII, subunit SEC31 n=1 Tax=... [more]
A0A421FTT1_9STRA3.280e-4644.83Sec16_C domain-containing protein n=2 Tax=Phytopht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13280contigH-canaliculatus_F_contig13280:164..1721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.6
Seed ortholog evalue6.9e-43
Seed eggNOG ortholog272952.HpaP801946
KEGG koko:K14005
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
GOsGO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016192,GO:0033036,GO:0034613,GO:0042886,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705
EggNOG free text desc.Sec23-binding domain of Sec16
EggNOG OGs3QEA1@4776,KOG0307@1,KOG0307@2759
COG Functional cat.U
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size606
Cds size591
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13280.2683.1prot_H-canaliculatus_F_contig13280.2683.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13280 164..1706 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929065.7295408-CDS-H-canaliculatus_F_contig13280:163..4421622929065.7295408-CDS-H-canaliculatus_F_contig13280:163..442Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13280 164..442 -
1696845666.596925-CDS-H-canaliculatus_F_contig13280:163..4421696845666.596925-CDS-H-canaliculatus_F_contig13280:163..442Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13280 164..442 -
1622929065.749258-CDS-H-canaliculatus_F_contig13280:987..11991622929065.749258-CDS-H-canaliculatus_F_contig13280:987..1199Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13280 988..1199 -
1696845666.616623-CDS-H-canaliculatus_F_contig13280:987..11991696845666.616623-CDS-H-canaliculatus_F_contig13280:987..1199Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13280 988..1199 -
1622929065.7647028-CDS-H-canaliculatus_F_contig13280:1606..17061622929065.7647028-CDS-H-canaliculatus_F_contig13280:1606..1706Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13280 1607..1706 -
1696845666.6269052-CDS-H-canaliculatus_F_contig13280:1606..17061696845666.6269052-CDS-H-canaliculatus_F_contig13280:1606..1706Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13280 1607..1706 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929065.7923422-UTR-H-canaliculatus_F_contig13280:1706..17211622929065.7923422-UTR-H-canaliculatus_F_contig13280:1706..1721Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13280 1707..1721 -
1696845666.638482-UTR-H-canaliculatus_F_contig13280:1706..17211696845666.638482-UTR-H-canaliculatus_F_contig13280:1706..1721Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13280 1707..1721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13280.2683.1

>prot_H-canaliculatus_F_contig13280.2683.1 ID=prot_H-canaliculatus_F_contig13280.2683.1|Name=mRNA_H-canaliculatus_F_contig13280.2683.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=197bp
MSCAKDNRTLLWDLFSLKPVYELPPGAGEEVPVQNTQMFGGYGKTAQRRY
QVSWSPHIPAVVSTCSFDRKVQLFSMNGAATSNGRAPKWHRRPAGASFAF
GGRLTRAHAHTQGAGAGSGTVKISSVKEDAAFVSASRRFEEAMASKGFRG
FCQEKEDAAATAHERRVWQFMQVIFEKNARNQLLAHLGFDGETVAR*
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mRNA from alignment at H-canaliculatus_F_contig13280:164..1721-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13280.2683.1 ID=mRNA_H-canaliculatus_F_contig13280.2683.1|Name=mRNA_H-canaliculatus_F_contig13280.2683.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1558bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13280:164..1721- (Hapterophycus canaliculatus Oshoro5f female)
GACGCGAGCCTGCTCATGTCGTGTGCCAAGGACAACCGGACCCTTCTCTG GGACCTGTTCAGCCTCAAGCCTGTCTACGAACTCCCTCCCGGAGCGGGAG AGGAAGTGCCGGTGCGTCTCTCGGGCTGTGCGTGGAGCCTGTCATTCGCG GTTTTTGCGGCTTGGGTTCGTTCTCGCATGCTTCGGTCTCGGTCGTGTGC GCGCGTGCGTTCACGAGACGCATGTGCTTCGCGTGTGCTCGGTGGCGTCG GGTCGGGAGTGGAGAGCGGCGGAGGTGCCGTTGTTGACAGCATCATACAT CAGATAAGACGCATGCTTCGAGAAACGATCAGCGCGAACACGTTCTCGTG CAGCCTGCACCGTTCTTTACCGCCGCCGCCGTCGCCGCCGTATTTTTTAG AGCGGAACACCCTTCCCTCTCGTCCTGCGCTCATCAACCCCCCCCCCCGG CCGCCCTCCTGTGTGCCTGCCCCCCGCCTCCTCCTCCCCTGCCCCCTTGC GCGACACAAAAATAACAGCAAGAGAACACCCAGATGTTCGGCGGCTACGG GAAGACAGCGCAGCGGCGGTACCAGGTGTCGTGGTCGCCCCACATCCCGG CGGTGGTGAGCACCTGCTCCTTCGACCGTAAGGTCCAGCTGTTCAGCATG AACGGCGCCGCCACCTCCAACGGCAGGGCGCCCAAGTGGCATCGCCGCCC CGCCGGAGCCTCCTTCGCGTTCGGCGGCCGCTTGGTGTCGTTCTCCGCGA GCGGCGGCGATGCGGCGGCGGGGAGCGCTGCTGGCCAGCAGGTGGGTCGG AAGGGCGGAGACGGGGAGGGGGGTGGAGGGAAGGGCGGGGAGGGGGGGGG GGGCAGACGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGAGACGCGGGATGCGTACGGCTCTTTGAGTTCGCTGCAAGAAGG GCAACGCAAACTGTTTGGTGGGTTTGGTGGGTTGGCTCCGCTCGAAGAGA AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGCGTCTAGAGCCATTTGTC GCCTTGCTTCGTTTCTGTTCTGCTGCTCCGTCTGCGGGTTTGACTTGGAA AACCCTGTGATATGGTGACGACCCTCGTAAAGCGTGCTTCCCGCCATCTC GCTTGTCTCTTGTCTCTTGTCTCTTGAGCGGTCACACCGCTCTTGGTATC ATCTACACACGACACACACCCATACACAGACACGCGCGCACGCGCATACG CAGGGCGCCGGTGCCGGCAGCGGGACTGTGAAGATCTCGTCCGTGAAGGA GGACGCGGCCTTCGTGTCGGCGTCGAGGCGCTTCGAGGAGGCCATGGCGT CCAAGGGGTTCCGCGGATTCTGCCAGGAGAAGGAGGACGCGGCCGCCACC GCGCACGAGAGGCGGGTGTGGCAGTTCATGCAGGTCATCTTCGAGAAGAA CGCTCGCAACCAGCTCCTGGCGCACCTCGGCTTCGACGGGGAAACCGTGG CGAGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13280:164..1721-

>mRNA_H-canaliculatus_F_contig13280.2683.1 ID=mRNA_H-canaliculatus_F_contig13280.2683.1|Name=mRNA_H-canaliculatus_F_contig13280.2683.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1182bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13280:164..1721- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGTGTGCCAAGGACAACCGGACCCTTCTCTGGGACCTGTTCAGCCT
CAAGCCTGTCTACGAACTCCCTCCCGGAGCGGGAGAGGAAGTGCCGGTGC
ATGTCGTGTGCCAAGGACAACCGGACCCTTCTCTGGGACCTGTTCAGCCT
CAAGCCTGTCTACGAACTCCCTCCCGGAGCGGGAGAGGAAGTGCCGGTGC
AGAACACCCAGATGTTCGGCGGCTACGGGAAGACAGCGCAGCGGCGGTAC
CAGGTGTCGTGGTCGCCCCACATCCCGGCGGTGGTGAGCACCTGCTCCTT
CGACCGTAAGGTCCAGCTGTTCAGCATGAACGGCGCCGCCACCTCCAACG
GCAGGGCGCCCAAGTGGCATCGCCGCCCCGCCGGAGCCTCCTTCGCGTTC
GGCGGCCGCTTGAGAACACCCAGATGTTCGGCGGCTACGGGAAGACAGCG
CAGCGGCGGTACCAGGTGTCGTGGTCGCCCCACATCCCGGCGGTGGTGAG
CACCTGCTCCTTCGACCGTAAGGTCCAGCTGTTCAGCATGAACGGCGCCG
CCACCTCCAACGGCAGGGCGCCCAAGTGGCATCGCCGCCCCGCCGGAGCC
TCCTTCGCGTTCGGCGGCCGCTTGACACGCGCGCACGCGCATACGCAGGG
CGCCGGTGCCGGCAGCGGGACTGTGAAGATCTCGTCCGTGAAGGAGGACG
CGGCCTTCGTGTCGGCGTCGAGGCGCTTCGAGGAGGCCATGGCGTCCAAG
GGGTTCCGCGGATTCTGCCAGGAGAAGGAGGACGCGGCCGCCACCGCGCA
CGAGAGGCGGGTGTGGCAGTTCATGCAGGTCATCTTCGAGAAGAACGCTC
GCAACCAGCTCCTGGCGCACCTCGGCTTCGACGGGGAAACCGTGGCGAGG
TGAACACGCGCGCACGCGCATACGCAGGGCGCCGGTGCCGGCAGCGGGAC
TGTGAAGATCTCGTCCGTGAAGGAGGACGCGGCCTTCGTGTCGGCGTCGA
GGCGCTTCGAGGAGGCCATGGCGTCCAAGGGGTTCCGCGGATTCTGCCAG
GAGAAGGAGGACGCGGCCGCCACCGCGCACGAGAGGCGGGTGTGGCAGTT
CATGCAGGTCATCTTCGAGAAGAACGCTCGCAACCAGCTCCTGGCGCACC
TCGGCTTCGACGGGGAAACCGTGGCGAGGTGA
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