mRNA_H-canaliculatus_F_contig1324.2660.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1324.2660.1
Unique NamemRNA_H-canaliculatus_F_contig1324.2660.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1324.2660.1 vs. uniprot
Match: A0A6H5L7M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7M4_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 1.060e-41
Identity = 112/269 (41.64%), Postives = 146/269 (54.28%), Query Frame = 3 
Query: 1356 FGDCIEMAANRAEGTEAAQDTADFLQTMLDTDCKICTCLPQYLIRMPSCDPWTRYHAVAMLLEDVCEHI--GTATSMEFLGPADASVVKAVEGEEAVSAVVEEEEGQKESQDETPEAQVELPGQEDLEVKAAEQEKRASGGVVGEEEVVEPHLPNTFGPCQQEGHVHTDPNDPTSCQPATTQEEGFGSP-QDRTDDRXXXXXXXXXGLVGLGMSVIGVVAIGXXXXXXXVWAWGKFQSGTRQPGVRYMATDIADHDLGTELGPFGRQYA 2153
            F +C++ A   AE  EA+Q T  FL+ ML  +  IC CLP +LI+MPSC PW RYH V  ++++VC+ I  G  T +  +  A+  V                   +++SQD    A +     + LE              +       P LPNTFGPC     VH  P+DP +CQP+   EE  G    D  D R         G++ LG+SVIGVVA+G  XX   +WAWGKFQSGTRQPGVRYMAT + D+++GTELGPFGRQYA
Sbjct:  173 FQECVKEA--EAEDEEASQATVQFLEKMLAEESTICACLPPFLIKMPSCGPWIRYHDVGEIVQNVCDFIDDGNNTVVADMDIAEVDVTPE----------------ERDSQDNATVAVLPAEDTKKLEXXXXXXXXXXXEAGIXXXXXRRPRLPNTFGPCPPGQEVH--PSDPKACQPSLNSEEYQGEEFGDGRDSRREGG-----GMISLGLSVIGVVAVGGVXXVGGLWAWGKFQSGTRQPGVRYMATGL-DNNIGTELGPFGRQYA 415
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1324.2660.1 vs. uniprot
Match: D8LR88_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR88_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 5.020e-33
Identity = 108/277 (38.99%), Postives = 144/277 (51.99%), Query Frame = 3 
Query: 1326 QEIRNQMDEIFGDCIEMAANRAEGTEAAQDTADFLQTMLDTDCKICTCLPQYLIRMPSCDPWTRYHAVAMLLEDVCEHIGTATSMEFLGPADASVVKAVEGEEAVSAVVEEEEGQKESQDETPEAQVELPGQEDLEVKAAEQEKRASGGVVGEEEVVEPHLPNTFGPCQQEGHVHTDPNDPTSCQPATTQEEGFGSP-QDRTDDRXXXXXXXXXGLVGLGMSVIGVVAIGXXXXXXXVWAWGKFQSGTRQPGVRYMATDIADHDLGTELGPFGRQYA 2153
            QE   ++   F +C++ A   A   EA+Q T  FL+ +L  +  IC CL  +LI+MP+C PW RYH V  ++++V            +   D +  +    ++A+ AV+  E  +K            L                       E      HLPN FGPC      H  P+DP +CQP+   EE  G    D  D R         G++ LG+SV+GVVA+GXXXXXXX WAWGKFQSGTRQPGVRYMAT + D+++GTELGPFGRQYA
Sbjct:  163 QETAEKLATAFQECVKEA--EAGDEEASQATVQFLEKLLAEESTICACLSPFLIKMPTCGPWIRYHDVGKIVQNV-----------LVAEVDLTPEEKDSQDDAIVAVLPAENTKK------------LXXXXXXXXXXXXXXXXXXXXXXXEHPA---HLPNAFGPCPPGQEAH--PSDPKACQPSMNSEEYQGEEFGDGRDGRREGG-----GMISLGLSVMGVVAVGXXXXXXXXWAWGKFQSGTRQPGVRYMATGL-DNNIGTELGPFGRQYA 403
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1324.2660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7M4_9PHAE1.060e-4141.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LR88_ECTSI5.020e-3338.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1324contigH-canaliculatus_F_contig1324:13944..23300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_003470.1
Exons7
Model size3869
Cds size1143
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929062.2550557-UTR-H-canaliculatus_F_contig1324:13943..139751622929062.2550557-UTR-H-canaliculatus_F_contig1324:13943..13975Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1324 13944..13975 +
1696845665.3127034-UTR-H-canaliculatus_F_contig1324:13943..139751696845665.3127034-UTR-H-canaliculatus_F_contig1324:13943..13975Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1324 13944..13975 +
1622929062.2719533-UTR-H-canaliculatus_F_contig1324:15938..161461622929062.2719533-UTR-H-canaliculatus_F_contig1324:15938..16146Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1324 15939..16146 +
1696845665.3250895-UTR-H-canaliculatus_F_contig1324:15938..161461696845665.3250895-UTR-H-canaliculatus_F_contig1324:15938..16146Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1324 15939..16146 +
1622929062.289605-UTR-H-canaliculatus_F_contig1324:16766..175391622929062.289605-UTR-H-canaliculatus_F_contig1324:16766..17539Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1324 16767..17539 +
1696845665.3357778-UTR-H-canaliculatus_F_contig1324:16766..175391696845665.3357778-UTR-H-canaliculatus_F_contig1324:16766..17539Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1324 16767..17539 +
1622929062.3904653-UTR-H-canaliculatus_F_contig1324:21587..233001622929062.3904653-UTR-H-canaliculatus_F_contig1324:21587..23300Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1324 21588..23300 +
1696845665.395551-UTR-H-canaliculatus_F_contig1324:21587..233001696845665.395551-UTR-H-canaliculatus_F_contig1324:21587..23300Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1324 21588..23300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929062.3063917-CDS-H-canaliculatus_F_contig1324:17539..179831622929062.3063917-CDS-H-canaliculatus_F_contig1324:17539..17983Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1324 17540..17983 +
1696845665.344089-CDS-H-canaliculatus_F_contig1324:17539..179831696845665.344089-CDS-H-canaliculatus_F_contig1324:17539..17983Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1324 17540..17983 +
1622929062.320932-CDS-H-canaliculatus_F_contig1324:18867..189261622929062.320932-CDS-H-canaliculatus_F_contig1324:18867..18926Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1324 18868..18926 +
1696845665.3545969-CDS-H-canaliculatus_F_contig1324:18867..189261696845665.3545969-CDS-H-canaliculatus_F_contig1324:18867..18926Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1324 18868..18926 +
1622929062.3354063-CDS-H-canaliculatus_F_contig1324:19897..199831622929062.3354063-CDS-H-canaliculatus_F_contig1324:19897..19983Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1324 19898..19983 +
1696845665.3635182-CDS-H-canaliculatus_F_contig1324:19897..199831696845665.3635182-CDS-H-canaliculatus_F_contig1324:19897..19983Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1324 19898..19983 +
1622929062.352031-CDS-H-canaliculatus_F_contig1324:20310..206061622929062.352031-CDS-H-canaliculatus_F_contig1324:20310..20606Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1324 20311..20606 +
1696845665.376667-CDS-H-canaliculatus_F_contig1324:20310..206061696845665.376667-CDS-H-canaliculatus_F_contig1324:20310..20606Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1324 20311..20606 +
1622929062.3675401-CDS-H-canaliculatus_F_contig1324:21329..215871622929062.3675401-CDS-H-canaliculatus_F_contig1324:21329..21587Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1324 21330..21587 +
1696845665.3872125-CDS-H-canaliculatus_F_contig1324:21329..215871696845665.3872125-CDS-H-canaliculatus_F_contig1324:21329..21587Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1324 21330..21587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1324.2660.1prot_H-canaliculatus_F_contig1324.2660.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1324 17540..21587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1324.2660.1

>prot_H-canaliculatus_F_contig1324.2660.1 ID=prot_H-canaliculatus_F_contig1324.2660.1|Name=mRNA_H-canaliculatus_F_contig1324.2660.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=381bp
MTTGQIIKHGSATPRSLIAAHSHVPSARSCELTQRVKSQSKVPQPTAPRL
VAHIKHNRTTGTAPQLPPRNMHTTSSPHYRKPPNTMPRPPQGKITPGEKT
DEELQEIRNQMDEIFGDCIEMAANRAEGTEAAQDTADFLQTMLDTDCKIC
TCLPQYLIRMPSCDPWTRYHAVAMLLEDVCEHIGTATSMEFLGPADASVV
KAVEGEEAVSAVVEEEEGQKESQDETPEAQVELPGQEDLEVKAAEQEKRA
SGGVVGEEEVVEPHLPNTFGPCQQEGHVHTDPNDPTSCQPATTQEEGFGS
PQDRTDDRRSSEEGGGGGLVGLGMSVIGVVAIGGVVGVGGVWAWGKFQSG
TRQPGVRYMATDIADHDLGTELGPFGRQYA*
back to top

mRNA from alignment at H-canaliculatus_F_contig1324:13944..23300+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1324.2660.1 ID=mRNA_H-canaliculatus_F_contig1324.2660.1|Name=mRNA_H-canaliculatus_F_contig1324.2660.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=9357bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1324:13944..23300+ (Hapterophycus canaliculatus Oshoro5f female)
GTGGCAGCAGTTGCAGGGGACAGCTGGGACAGGTGTGCGGCGAAGCGCAT
TGTTGTGTGCATGGCTCGTGTGGTAGTTGCTGGAGCCCTACTTGTGTATG
GGAAGGGTGTTCTTCAAGAGAAGGCTGGTCAGCTTGAATTTTTCCTCTCC
CTAATCCTCAAAGCGTGTCTCCCCTCGTCTGTCTACAAGTACACTATCCG
CGGCACAGCAGTGCTGTGAGTCACCTCACCCAAATTAAGTCGGAGTGTCG
AGTTTGAAACGGCCCAGTGCCAAAGGCGTACGCGCCGAATCCACGCGGCG
GAGATTATACTGCGCATCGCCCACCGTATGCGGCCGGCCCTGTTGGAGTG
TGCCAGTTCCGCAGGTGATATCAAACGCCGCAGCGGTGATCTCTCTGATA
CCGAAAGTGTCCGTAACGTCTGTTGGGCGTTACTTCGTTACTTCAACCGT
GACTTCGTCACTCCCCGCCGAGCGGCCGGGCGTACAAGGGAGCAACATAG
CCAGTGGCCTGCCGTTGAGATCGGCCGACAACGATCGTGGAAGTTGGCAC
TTGCGTTTACGATCGTGACTGCAATTGTGATTGCGATCGGCAGGTCCTTG
CGGTGCTCTCACCGTCGCGCGAATGTTGGGTGATGCTCCCTCTACCCACA
ACTTCCGGACACAGAGTACCGGAGCCCACTCACACGGCGGGCACCCGTGC
CCCCTTTTTTGTTTTTTCCTCTCCACACACGAGTACTGTAAGCAGAGGTG
TACGCGTTCCAACGCTTCTTGGAGGAACGGCTCCAGCGGGTCTCATGCTG
TCCTTCCCGTCCGCAAGTCACGCTGCGTTTTATTAGAGTTTGTCTTCGCC
GGGCAGCAGGCTTCGAAGGGGTGGCGTTCACCCGCGATACTGCTGTACTC
GGGATTCTTGGATACAAGCAGTAGGCGCCACCACTTAAGAACCTCTTATT
TTTCCCGAGGCTCAGTTCTGACTTGCCTGAGGGGTATCTCTATGTAGGAG
TTAGTGTACAGGTTCTTATCCGGGTATCGCAAGTGAGGCTGAAGTTCTCA
TGTGCCAAGTTCTGAAGTGGTGGCGCCAGCTGTATGCTTGGCGCTATTCC
TTCGGGTCCTCCATCCTCAATCCCCGGACAGAGCCAAATTTCAAAATTCT
TTTTGAAATAACGGAATGAAGAACGAAGAACTTGCGGGGACGCCGCTGCT
CTGGAGGTTTTTGAGCTTGCGCATCGCATTCCATGCCCTCTGTCTCGTTC
TCGTCTCCGTCTTAAACTTTTCTCGCGGCGTCGTCCATCATACTTCTAAG
TAGTTTGTCTACGTACAGTATCACGAACGTATTTCCCTCGAAGATTTCGC
GGCCGTTTCGTGCAGCGGATGAGTTGAGTCTCTCTTCTCCCCTTCGTTCC
CTCCGCCCTTGTACGAGACCACTACTGATGCGTCTCGAGAACATCACCAG
GAACCCACATACTTCTTTGTAACACAAATGTTTCGAACTTGGGATAAAAA
CCTGGAAAAATCTAACCGTGTGCTGTCCTGTAACACGAAGGCCGATGCAA
GCCCTACCCTTGTCTCCTTCGGTGGTAATAGCATCTAATTCAATCCAATC
GATCATCGAGTTGTTTGCCATCATGGACGCGCTGGGGTTGCACGCGCACG
TGGGACGTCGGTTCGATTCCCCCCCCCCCAGTTTTTCACCGCTTTTTGTC
TTTGTATTACAAGTATTAGTGTTTCGTTTCTCCTGGTTGCCAATGCTGCA
GGGTACGGAAAATTCGCGCTGCGCCTCGCGCTTGGTTGCGGACACGGCCC
CTGCCGCTGTTCCGTTGGCGAACGCCGCAACTGCCCTGATATCGTAACTG
CTGTGGAGTTTGAGTGTCCCTGTTCATTCCTCTCGGTTTTTCCTTTTGAT
GCTTTGGTTGGGCCACTACTCATGCGCCGTGTTTCACCCACTGCAACGCT
TTCCCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGATCTTCAGCCCCG
ACCACGGAGATCACGAGCACCACCCCTTTGGGCATGACGAACACGATCAT
GACCACGACCATGGCCACGACCACGACCACCACGGCTTTCACGGTCCCGA
GCACGAACACGATGGCATGCACCCTGGTCCCCTCGAGCATGACGGGGCCC
CCGGCGGGGAGAATGGCTCCTGCACGCCGGCGCAGACCCAGGTTGCCTTG
AAGGTACGCGGTGTACTGCTTCGCTCTTTCCTTCCCTTCTTGATCCCCCG
GTCGTTTGTTGTTTCTTGCTCAAGTTTGACGCCGCCGTCAAAGACTCCAT
TGATCGGTCGTTTGGACACGTAGCGGCATGAGAGTGATGAGGTTTCGATT
GATGCTGCTCGTCAAGCCTTCTGTGCCAGGAACAGTGGTATCACGACGTC
GTCACCCCCCCTCCCCTTCCTCGGTCACCCACGGTGAGATGCCGGCAAGA
TGAGGCGCTTTGATTGCAGTGTGGAGTCCCAGAGTTCCCTCGACGGTCTA
CCTTCAATTCACCCCCAACGTCTAGTCTGTCGAACCGATTGCACACGCGT
GAAGGCACACTGTCCGCATGTCAAATTGTCAAAATGTCAAAATGTCAACA
TCAACACATCGGTGCATCGCTCGTGGGCGTCGCCCCTTGCTTCCACGCAT
CCTCCTCGCCTGCAGCTTCAACAGCACGAATTCCGGGAGCCGCAGCTTCA
ACAGCATGAATTCCGGGAGCCGCAGAGAAGGCGAAGAAAGCGCGATCGCG
CGATCCTCATCACTCCTCCCACGCCGTTCGCTGTGCCCGTGCTCCTCTCG
CCCACGGATACTGTTCTGTACAGGCGACCTCGGACTACGTGAGCTGCGCC
TTCCTGAACTACGCCGACTTCCAGGCTCTGGTGCACGCCGACATGGACAT
TCTTAACGACGCCGCCGTTTGCTTCAAAGAGAAGGCGGAGGAAGCCGAGG
TGGTTTTTTTTTTGCCTTTTTTCATGCGTTGCGCCCTGATTCCACGGACC
CCGGTGTTGCAAAAGGACGGCGTTTTCCTTCCCGCGTGCGCGATGTGCTT
CCCCCATCCAGGAATCCGACGTTGATACTGCAGCTTCATTTCGAAGGTCC
ATATCTTTCCTTTTGTGATGCCGATGTCCATTTTTGTTCGATCTGGCGCC
ATCGGTCAACAGTTTCGTTCGTTTTACCGAGCACAATCATTTGTCACAGC
CGTGCGTGCTTCCTTCTTTCACCTCTTTTTCTTTGCCTTCCCGAAACCTG
ATGAAAAGGGTGCAACCTTCCCTGGCCTACAGTACGGTTACTGAATCGTG
GTGCCATCGGAACGCGCGCTATGTGCTCTGTCTCTTGTGAAAGGCGCCGT
GATTTCGTTGTCTTCCCAACTACGAGGTACAATATCGATACTCAGACGAC
ACGCGTCAAGCAAGTATGGTCCTAAGCACCACTACCCCCACCGCCACAAA
CGGTCTCTGTCTGCGACCATGTCCGTCCTTGTGAAACCCTTCCCACTCTG
CCCAAGAAACGCGTCATCTAAAGAGACCGCCTCTCAGCATTAGACTGCAC
GTCTTGGGATGAAGCGCACGAGTAAACTCAGCGCCACGCGACCGATATGA
CGACGGGACAGATCATCAAGCATGGATCAGCAACACCTCGCTCGCTTATC
GCAGCACACTCCCACGTGCCAAGCGCTAGATCGTGTGAACTGACCCAACG
CGTCAAGTCACAGAGTAAAGTGCCTCAGCCTACAGCCCCTCGCCTTGTCG
CCCACATCAAGCACAACCGCACTACTGGAACAGCACCACAGCTCCCGCCA
AGAAACATGCACACAACCTCATCACCACACTACCGAAAACCGCCCAACAC
CATGCCGCGGCCACCTCAGGGGAAGATCACCCCTGGAGAGAAGACGGACG
AAGAGCTGCAAGAGATCAGGAATCAAATGGATGAGATCTTCGGAGACTGC
ATCGAAATGGCGGCAAATAGGGCGGAAGGCACGGAGGCCGCACAGGACAC
GGCCGACTTCCTCCAAACCATGCTCGACACGGACTGCAAGGTACGTCGTA
GGCATGCGGGGGAGGGGGGAGGGGGTATTGGTTCGGGCGGCGTACTTTGA
TGCCTCCTTGCGCGGAAGCCCACGCTCTTGAGTTGTGGCGAGGGTGGGAT
CTGAGGGGACGACCAAGACGTGACGCCAAAGTCCCGCTGGAACGCCCGAC
TCCCCTCCTCAAATGCGATCTGTTCCGCGTCGGTTACAACAGACAAGGCG
TCGTCGGCGCGATCTTAAAGCTGGCGAGAGAAGCCAGCGCGCTGTCGGAG
TGTTTATGAGCGTTAGTAGAAATTTGGAGATTTCAGATTTTTCGCGACGC
TTTTCCCGTCCTCGGTGCCGATGTCGGACGTGCACAATTTCGGGGCACAG
AAGTGCTCCGAAGAGTCTTCAGTCTCGATATTCCTCCCAAGGTTGATATT
CGCTCTTCCTAAGATCGAATTGGGAAGGGGTGTCACTGTGAGCGCTGAAA
CCGCTCGGACGACACCCCGCGTGGACGTGTCGTGTGGTGTGAACGTTCCT
TGCTTGTCGAGGTGTGGCGTGGCGAGTGACGCGGGAGACACCCGGGCTCC
AGTAATCAAAGCCGATGGCACTCTCGCGACTTGCAACCGCCGGGCCATCG
CGTCACGTCGTCTGCACGGCATGGCGTGGCACGGCAAGGTTTTTCGGAAC
AATTCTGCACGAGCCCCCTCTCCACGTACCTACCGCCTACGCTCCCGCTT
GGTCGGCACCAGTCAACCAACAGCCCCAACCACCCTTTCGTCTGTCTGCC
TCTTGCCCCCTCTGCCTGCGACCTCGTCGCCCCTTGCCTGCCGGCCCGGC
TCGGCGCGATGATGCGCCCGACGCCTCCTGCGGCGCTGCCCCGGGCCCCT
CGGAAACACGCGTGCGTGCCGTAGATCTGCACCTGCCTCCCTCAGTACCT
GATCAGGATGCCCAGCTGCGACCCGTGGACAAGGTGGGTGGACCGTCGCT
AGGGTGGTGGGGTGGTGGGCGAGGGTGGCAGATAGGGAAAGTGCGCTTTG
GCCCGGGCCAGGCGTGCGGAGGAGGGTGGCGAGCCGGGTCGCCCTTCGTG
CCCGGCTTTGTGGTGGGAAGATACGAAGACCGTGCGTTGCTCGATTTTTC
GAGTGCGTGTTTTTTGTTTTGCTCTTGCCCTCTCTCCTGCGGCGATACAT
GTTTGCAGCGCTTTGCTGTGTGTATGGCGCACGTGTCCTGGGGTGGTGAT
AGTGCTGCATTGCAGGCACATCGTCCGGTGTGCTTGGGGTCAGCGTTACC
AATGTTCCGGTACCTATTACTGGCGGCTGCCATGTTCGCTCGGTGCGGGT
ATGTGTGCTGCAAGACGGTCGTGTTTTTTTTTTTTCCCTTCAGTTGTGAC
CCCGACGCTTTACCCCCCCGGCTGGGTTTGTACAAGGTTACCCACGCCGT
CGAGCTTGCCTGATTACCCCCTAACGTGTTGCCGCTGCCGCCCCTGCCGA
AAGCGGATTAGTAAGACTCGGCTTTACTTTCCGAGAAGCGAAGAGGTGGT
GCCGGACCCGCCCTCATACGACGCGCATAACTCATGTCGGAATACGAAGA
AAATAATTCGTAATGATGATTCGTCGCAAGCTACGCTACGCATCCATGAT
CGCGATGGTCGTGCCCACCTGGTAGGCGTCTCGAGGGCCTTCAGAGACAC
ATTTTGGAAAGTCAGAGGTGCATGCCAAGCCACTGGATGCGGTGGTTCCC
GCTTCCACTGTCGTCTGCGTTTCGCGTCGCCTCTGCCCCATGCGTCGTCT
GGCCCGCGCGCGGCGGCGTAGCGGGTAACCACCGATGAGCGTGAAGATGA
GGCTGCGCGAGAGGACGGAACAGAGGCAAGAGGCAAGGTCTTGTTCGCGT
GTCTAGACCCCACATCGCGACGTGATCAAATTTACCACTCGCCTCATCCA
CCAGGTACCACGCCGTGGCCATGCTCTTGGAGGACGTGTGCGAGCACATC
GGCACCGCCACCTCCATGGAGTTCCTCGGCCCCGCGGATGGTAAGTCCCG
CGCGCCCTGTAGACACACAGCATCTTTGAAGCGAAAGCTCGTTCTTCGTC
CGCCCGCCTCGCACAGCCTGCTATCCGGGTCGCGGCCGATTTGTCCACGA
TTGGTTTTCGAATCCCTCTACGAATGGCGGCCTTTTGGCTCTCCTGCCCG
CCCACGTTCTTCCTTCGCGATTGCAAAAGGGCCCACTTTTCTGGCGCCGC
TCTCGACGTCCCCCTCTACGTTGAGTTGAGGCGATTTCCGATGTTCAATT
CCTCCGGTCGATTACTGCCGTCTCCCCGGTCGATTTTCTTCCGTCTCCCC
TCCGCCCCGCCGACCAGCTTCCGTCGTAAAGGCTGTAGAGGGGGAGGAGG
CCGTCTCCGCCGTCGTGGAGGAAGAGGAAGGGCAGAAGGAGAGCCAAGAT
GAAACGCCCGAGGCACAAGTGGAACTCCCCGGCCAGGAGGACCTGGAGGT
CAAGGCGGCCGAGCAGGAGAAGAGAGCTTCGGGAGGCGTTGTCGGAGAGG
AAGAGGTGGTGGAGCCTCACCTGCCCAACACGTTCGGCCCCTGCCAGCAG
GAGGGGCACGTGCACACCGACCCCAACGACCCTACGTCTTGCCAGCCCGC
CACGACCCAGGAGGTAGGTGTTGGAGAGGGGAGAGGGGGGGGGGGCTGAA
AGAGGGTCGAAGTGATTGGAGTCGCGGACGAGTCACACCAGTGGACCCAA
GGTCTGCGTGACGCCAAGGCTCCACAAGACGCCGGATAAATCGACGCTCG
CTCGTGCGTGCGTTGTCGAGGGAGACCAGATTGTCTTCTTGTGGGATGAG
TCACCTGCGACTCGGTTCAACGCTGCTGGGTGTTCCGAACCAGAACAAAT
GTTTGTGCCGGCCGAAAAGTTAGACCACCACGAAAGTAATCGAGGAAAGC
AGGTAGCGAAGTGATACGGGCAGAAAATCAGACAATCAGACAAGTCGGCT
GTTCAAACAAGTCGCTTCATGCTCGAAGCTCTTTCCTGGTTCCGAGCGAG
TTTTTGTTCTGTGTCTCTTCATGTGATGTGTCCGTGTCGACGTCGGCGGT
GGCGGTGGCGGCGGTGGTGGCGGCGATAGCGATTTTTTGGAGTGCTTCGT
TTCCTCGCTACAAGCCCGCCAGAGCAGGACCTCACGCATCAACCCATGTT
TGTTGCTAGCCTACGGTTGCGACTCCTCCTGCGGCAGCCGCCACCACACC
TGCACACACCTGTACACCAGTCACTCTCCACCGACCCGTGTGCCGTCGCC
GTTGCCGCTCCCCTCTTCGTGCCCCCACCCCCTTCCTCCGCTCTCTCCGG
GGCCCCCACCCCCTCTCATCCTCTCATCGCCAACAGGAAGGATTCGGGAG
CCCCCAGGACCGAACTGACGATAGGCGCTCGTCGGAGGAGGGCGGCGGCG
GCGGGCTCGTGGGCCTCGGCATGTCGGTCATCGGTGTCGTCGCCATCGGC
GGAGTGGTAGGCGTCGGCGGCGTGTGGGCGTGGGGCAAGTTCCAGAGCGG
CACCCGCCAGCCGGGAGTGCGGTACATGGCCACGGACATCGCTGACCACG
ATCTCGGGACCGAGCTCGGGCCGTTCGGCCGCCAGTACGCCTAACTCTAC
GGTGCTCTGGACGCCCCCGTGTTGTATCTCTTCCGTCGTTGCTGGCTAAT
TGGTTCCGATCGGTGGCGCAGGTGCCGACGGAATCCATGGAACACTATGC
AGGCGGACACTCGTAAGACCGACCATGTCTACCGCCGAAAATTAGGTCTG
CTGGCTTCCGACTGGCTGGCTGGCTGCACTTCCTCTCTTGCAAGTTCCTC
TCGAGGTTGGCCCTCGGGCTTGTCGACCCCCCGGGCGTGTAGCCCGTCTA
GTCCGAGGCCTGGGTCCCCACAAACACCGTTCCTCGCTGGGGTCGAGTGT
TGTGTTGTTCTCAGGGACGACGTCGAATTGTTGGAAACGGCTCGTGGTGA
TCTACGCTATCGGCTTGGACTGCCGGTCTCGCCAGGTCGGATGGAACAGT
GCGTTCGCTGACGGTTCGGCACGATGTGTACTGCTCAAGTCGTCCGGGAG
AGGGGGGGCCAGGGAAGAGTTTCTGTACATGGGGCGGGCAAAGCTGTCGG
TAAACGGATAGCAACAGCAGTGGAGAGGAGAGCTCCCGCGAAACGCAGGA
GCTGGCCACAGGATACGGGGTGCGTCCCGGAGCCGAACTTCCGGGAAGAG
GAACGTGGACGCGCCTCCGTTGTTGGTCGTTGGGGTAGCGGTGCGCGTCA
GGTGGTTCTTTCTTGGTAGCCCGTGATGGAATGAGGTCCAGCTTTGATGC
GACGAGTGCAGAAGAGTGGAGCTGCGGCGTGCTCTTAGGTTCGCTGCCGG
GAGGGGGGGGAGGAGACGAGGGAGGAAGAGGGGGCGAGAACGAGCTGAGG
ATCCGACTGGACCATCTGCCTTGTTGCTGCCCGCGGTTGTTCTCTCCGTC
TCCCTCTGGCTCTTCTCGTGTGTGTGTGTAGGATTCTTCGCTGGGTGTTC
GTTAGCCCGGGTTATTCGGAACTATATGACCCCGCCGAGGACTTTCTTCA
GAGGTAGCACAGACGTCAGCCCTCACGGGGTGTTTTTCGATGTTGCGGGG
CCTCGTTGTTGTTAGCTCTCATGATGTGCTGGAAAATAGCAGCCTCTTGT
TGCAACAGCAGTACGTCCGAGACTTGCTGCGCCCCCCCCCCCCATAGTAG
TCTTGATGTTTGATTGTCCATGACGTCGTTTTTGATGATGCAGGGTAATG
AAGCCTGGATGGGTCGAGAGCCACGTTCGAATCGATTTATTTGGCATCAG
CTGCGGCCGATGAACGTTTTTTACGCCCGAGGCTCTTCGACCAATAAAAA
AACTGCGTGCCCCGAATCCTCACCTCTCCCAAACAGTGTCGTCCCTACTT
CGTTACTTTTTTGGACCGATCGGTTTACATGTTTTTCTGGTGTGACTGTG
TTTCGTGGGGTCGCACTTGAAAAAGCGCACACGTCGGGATCCCGTTGTAC
CATCCCTAGTAGTCCGGGAAAAACCCGATTCACAGGAGTTCAGAGGAATA
CCTGTTCTGTTTCTCGCCTGGGTAGGGAGGTACGGCCTGCATGTTGTCGA
AACAGCTCGGTGGATTCGGCCTGTCTGCCCCTGCCACTCCTTATCGCGGG
TGCAATGTTGGCTTCACGAGCTTGTAAGGAGTATTCCGCTAAACTACGCC
GGGGCTTTGCTTGGATGCATCCCCTAATGCTGCTGTGGGAGGATTCCCAA
CACTTTTATGTTGCGATCGTCCGCCAGATTTCTCTGGACCAAACGCGCCT
AGTGACT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1324:13944..23300+

>mRNA_H-canaliculatus_F_contig1324.2660.1 ID=mRNA_H-canaliculatus_F_contig1324.2660.1|Name=mRNA_H-canaliculatus_F_contig1324.2660.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2286bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1324:13944..23300+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACGACGGGACAGATCATCAAGCATGGATCAGCAACACCTCGCTCGCT
TATCGCAGCACACTCCCACGTGCCAAGCGCTAGATCGTGTGAACTGACCC
AACGCGTCAAGTCACAGAGTAAAGTGCCTCAGCCTACAGCCCCTCGCCTT
GTCGCCCACATCAAGCACAACCGCACTACTGGAACAGCACCACAGCTCCC
GCCAAGAAACATGCACACAACCTCATCACCACACTACCGAAAACCGCCCA
ACACCATGCCGCGGCCACCTCAGGGGAAGATCACCCCTGGAGAGAAGACG
GACGAAGAGCTGCAAGAGATCAGGAATCAAATGGATGAGATCTTCGGAGA
CTGCATCGAAATGGCGGCAAATAGGGCGGAAGGCACGGAGGCCGCACAGG
ACACGGCCGACTTCCTCCAAACCATGCTCGACACGGACTGCAAGATGACG
ACGGGACAGATCATCAAGCATGGATCAGCAACACCTCGCTCGCTTATCGC
AGCACACTCCCACGTGCCAAGCGCTAGATCGTGTGAACTGACCCAACGCG
TCAAGTCACAGAGTAAAGTGCCTCAGCCTACAGCCCCTCGCCTTGTCGCC
CACATCAAGCACAACCGCACTACTGGAACAGCACCACAGCTCCCGCCAAG
AAACATGCACACAACCTCATCACCACACTACCGAAAACCGCCCAACACCA
TGCCGCGGCCACCTCAGGGGAAGATCACCCCTGGAGAGAAGACGGACGAA
GAGCTGCAAGAGATCAGGAATCAAATGGATGAGATCTTCGGAGACTGCAT
CGAAATGGCGGCAAATAGGGCGGAAGGCACGGAGGCCGCACAGGACACGG
CCGACTTCCTCCAAACCATGCTCGACACGGACTGCAAGATCTGCACCTGC
CTCCCTCAGTACCTGATCAGGATGCCCAGCTGCGACCCGTGGACAAGATC
TGCACCTGCCTCCCTCAGTACCTGATCAGGATGCCCAGCTGCGACCCGTG
GACAAGGTACCACGCCGTGGCCATGCTCTTGGAGGACGTGTGCGAGCACA
TCGGCACCGCCACCTCCATGGAGTTCCTCGGCCCCGCGGATGGTACCACG
CCGTGGCCATGCTCTTGGAGGACGTGTGCGAGCACATCGGCACCGCCACC
TCCATGGAGTTCCTCGGCCCCGCGGATGCTTCCGTCGTAAAGGCTGTAGA
GGGGGAGGAGGCCGTCTCCGCCGTCGTGGAGGAAGAGGAAGGGCAGAAGG
AGAGCCAAGATGAAACGCCCGAGGCACAAGTGGAACTCCCCGGCCAGGAG
GACCTGGAGGTCAAGGCGGCCGAGCAGGAGAAGAGAGCTTCGGGAGGCGT
TGTCGGAGAGGAAGAGGTGGTGGAGCCTCACCTGCCCAACACGTTCGGCC
CCTGCCAGCAGGAGGGGCACGTGCACACCGACCCCAACGACCCTACGTCT
TGCCAGCCCGCCACGACCCAGGAGCTTCCGTCGTAAAGGCTGTAGAGGGG
GAGGAGGCCGTCTCCGCCGTCGTGGAGGAAGAGGAAGGGCAGAAGGAGAG
CCAAGATGAAACGCCCGAGGCACAAGTGGAACTCCCCGGCCAGGAGGACC
TGGAGGTCAAGGCGGCCGAGCAGGAGAAGAGAGCTTCGGGAGGCGTTGTC
GGAGAGGAAGAGGTGGTGGAGCCTCACCTGCCCAACACGTTCGGCCCCTG
CCAGCAGGAGGGGCACGTGCACACCGACCCCAACGACCCTACGTCTTGCC
AGCCCGCCACGACCCAGGAGGAAGGATTCGGGAGCCCCCAGGACCGAACT
GACGATAGGCGCTCGTCGGAGGAGGGCGGCGGCGGCGGGCTCGTGGGCCT
CGGCATGTCGGTCATCGGTGTCGTCGCCATCGGCGGAGTGGTAGGCGTCG
GCGGCGTGTGGGCGTGGGGCAAGTTCCAGAGCGGCACCCGCCAGCCGGGA
GTGCGGTACATGGCCACGGACATCGCTGACCACGATCTCGGGACCGAGCT
CGGGCCGTTCGGCCGCCAGTACGCCTAAGAAGGATTCGGGAGCCCCCAGG
ACCGAACTGACGATAGGCGCTCGTCGGAGGAGGGCGGCGGCGGCGGGCTC
GTGGGCCTCGGCATGTCGGTCATCGGTGTCGTCGCCATCGGCGGAGTGGT
AGGCGTCGGCGGCGTGTGGGCGTGGGGCAAGTTCCAGAGCGGCACCCGCC
AGCCGGGAGTGCGGTACATGGCCACGGACATCGCTGACCACGATCTCGGG
ACCGAGCTCGGGCCGTTCGGCCGCCAGTACGCCTAA
back to top