prot_H-canaliculatus_F_contig13235.2658.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig13235.2658.1
Unique Nameprot_H-canaliculatus_F_contig13235.2658.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length123
Homology
BLAST of mRNA_H-canaliculatus_F_contig13235.2658.1 vs. uniprot
Match: A0A6H5L9Y2_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 4.630e-69
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEEREAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIFYDPDPRSTVVDEDVELLEGHFDIQEEE 123
            MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEER AGADEAEGQEVAKRVVDILEYVTLGDITTSTQI+YDPDPRSTVVDEDVELLEGHFDIQEEE
Sbjct: 1122 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEE 1244          
BLAST of mRNA_H-canaliculatus_F_contig13235.2658.1 vs. uniprot
Match: D8LRY3_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 4.680e-69
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEEREAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIFYDPDPRSTVVDEDVELLEGHFDIQEEE 123
            MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEER AGADEAEGQEVAKRVVDILEYVTLGDITTSTQI+YDPDPRSTVVDEDVELLEGHFDIQEEE
Sbjct: 1121 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEE 1243          
BLAST of mRNA_H-canaliculatus_F_contig13235.2658.1 vs. uniprot
Match: A0A836CHC4_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC4_9STRA)

HSP 1 Score: 173 bits (438), Expect = 1.210e-47
Identity = 88/120 (73.33%), Postives = 99/120 (82.50%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEEREAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIFYDPDPRSTVVDEDVELLEGHFDIQ 120
            MCGVLAAQSIGEPITQMTLNTFH+AGVSAKNVTLGVPRVKEIINVA N RTPSLTIYL       D  + QE AKRVVD+LEY+TL D+T STQI+YDPDPR T+++ED E +E   DI+
Sbjct: 1113 MCGVLAAQSIGEPITQMTLNTFHYAGVSAKNVTLGVPRVKEIINVAANPRTPSLTIYL-----SPDSEQDQESAKRVVDMLEYITLADVTVSTQIYYDPDPRDTIIEEDKECVEAFLDIE 1227          
BLAST of mRNA_H-canaliculatus_F_contig13235.2658.1 vs. uniprot
Match: A0A1Y2EZK6_PROLT (DNA-directed RNA polymerase subunit n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2EZK6_PROLT)

HSP 1 Score: 152 bits (383), Expect = 3.120e-40
Identity = 73/120 (60.83%), Postives = 98/120 (81.67%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEEREAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIFYDPDPRSTVVDEDVELLEGHFDIQ 120
            MCG LAAQSIGEP TQMTLNTFH+AGVS+KNVTLGVPR+KEI+NVAKN++TPSLT+YLE   + A E      AK++  +++Y TL  +T++T+I YDPDPR+TV++ED + +E +F+I+
Sbjct: 1064 MCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTVYLEPEYSKAIED-----AKKIQSVIQYTTLRTVTSATEIHYDPDPRTTVIEEDRDFVEAYFEIE 1178          
BLAST of mRNA_H-canaliculatus_F_contig13235.2658.1 vs. uniprot
Match: B5RSM9_DEBHA (DNA-directed RNA polymerase subunit n=7 Tax=Debaryomyces TaxID=4958 RepID=B5RSM9_DEBHA)

HSP 1 Score: 151 bits (381), Expect = 5.810e-40
Identity = 77/122 (63.11%), Postives = 101/122 (82.79%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEEREAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIFYDPDPRSTVVDEDVELLEGHFDIQEE 122
            M GV+AAQSIGEP TQMTLNTFH+AGVS+KNVTLGVPR+KEI+NVAKN++TP+LT+YLE +E+ AD     E AK V   +E+ TL ++T++T+IFYDPDPRSTV++ED + +E +F I +E
Sbjct: 1069 MVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLE-KESAAD----IEKAKIVQSAIEHTTLKNVTSATEIFYDPDPRSTVIEEDYDTVEAYFAIPDE 1185          
BLAST of mRNA_H-canaliculatus_F_contig13235.2658.1 vs. uniprot
Match: A0A0L0SJR7_ALLM3 (DNA-directed RNA polymerase subunit n=3 Tax=Allomyces macrogynus TaxID=28583 RepID=A0A0L0SJR7_ALLM3)

HSP 1 Score: 150 bits (380), Expect = 7.940e-40
Identity = 78/117 (66.67%), Postives = 92/117 (78.63%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEEREAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIFYDPDPRSTVVDEDVELLEGHF 117
            M G++AAQSIGEP TQMTLNTFHFAGVS+KNVTLGVPR+KEIINVA N++TPSLT+YL       + AE  E AKRV   LEY +L   T  T+IFYDPDPRSTV+DED E++E H+
Sbjct: 1081 MVGIIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINVAVNIKTPSLTVYL-----NPEIAENIEEAKRVQSELEYASLRKATLRTEIFYDPDPRSTVLDEDKEMVESHY 1192          
BLAST of mRNA_H-canaliculatus_F_contig13235.2658.1 vs. uniprot
Match: W1Q7J6_OGAPD (DNA-directed RNA polymerase subunit n=9 Tax=Ogataea TaxID=461281 RepID=W1Q7J6_OGAPD)

HSP 1 Score: 150 bits (379), Expect = 1.080e-39
Identity = 75/122 (61.48%), Postives = 99/122 (81.15%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEEREAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIFYDPDPRSTVVDEDVELLEGHFDIQEE 122
            M GV+AAQSIGEP TQMTLNTFH+AGVS+KNVTLGVPR+KEI+NVAKNV+TP+LT+YL+E     + A   E AK +   +E+ TL ++T ST+I+YDPDPRSTVV++D++ +E +F I +E
Sbjct: 1024 MVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNVKTPALTVYLKE-----EYASDIEKAKSIQSAIEHTTLKNVTASTEIYYDPDPRSTVVEDDIDTVEAYFAIPDE 1140          
BLAST of mRNA_H-canaliculatus_F_contig13235.2658.1 vs. uniprot
Match: A0A6A5AD01_9STRA (DNA-directed RNA polymerase n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AD01_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.220e-39
Identity = 76/123 (61.79%), Postives = 96/123 (78.05%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEEREAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIFYDPDPRSTVVDEDVELLEGHFDIQEEE 123
            M GV+AAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR+KEIIN+AK+V+TPS+ IYL+      D A   E AK++   LEY TL D+T ST I+YDPDP STVV+ED + +  ++D+ +E+
Sbjct:   24 MAGVVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINIAKDVKTPSIQIYLK-----PDCAHDAEKAKQIQSTLEYTTLMDVTASTAIYYDPDPTSTVVEEDADFVASYYDVIDED 141          
BLAST of mRNA_H-canaliculatus_F_contig13235.2658.1 vs. uniprot
Match: UPI000151A8B3 (hypothetical protein n=1 Tax=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) TaxID=294746 RepID=UPI000151A8B3)

HSP 1 Score: 150 bits (378), Expect = 1.430e-39
Identity = 77/122 (63.11%), Postives = 98/122 (80.33%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEEREAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIFYDPDPRSTVVDEDVELLEGHFDIQEE 122
            M GV+AAQSIGEP TQMTLNTFH+AGVS+KNVTLGVPR+KEI+NVAKN++TP+LT+YLE+     D A   E AK V   +E+ TL ++T ST+IFYDPDPRSTV++ED + +E +F I +E
Sbjct:  330 MVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEK-----DIAADIEKAKVVQSAIEHTTLKNVTASTEIFYDPDPRSTVLEEDYDTVEAYFAIPDE 446          
BLAST of mRNA_H-canaliculatus_F_contig13235.2658.1 vs. uniprot
Match: RPB1_PICGU (DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=5 Tax=Meyerozyma TaxID=766728 RepID=RPB1_PICGU)

HSP 1 Score: 150 bits (378), Expect = 1.470e-39
Identity = 77/122 (63.11%), Postives = 98/122 (80.33%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEEREAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIFYDPDPRSTVVDEDVELLEGHFDIQEE 122
            M GV+AAQSIGEP TQMTLNTFH+AGVS+KNVTLGVPR+KEI+NVAKN++TP+LT+YLE+     D A   E AK V   +E+ TL ++T ST+IFYDPDPRSTV++ED + +E +F I +E
Sbjct:  896 MVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEK-----DIAADIEKAKVVQSAIEHTTLKNVTASTEIFYDPDPRSTVLEEDYDTVEAYFAIPDE 1012          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13235.2658.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9Y2_9PHAE4.630e-6998.37DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
D8LRY3_ECTSI4.680e-6998.37DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A836CHC4_9STRA1.210e-4773.33DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A1Y2EZK6_PROLT3.120e-4060.83DNA-directed RNA polymerase subunit n=1 Tax=Protom... [more]
B5RSM9_DEBHA5.810e-4063.11DNA-directed RNA polymerase subunit n=7 Tax=Debary... [more]
A0A0L0SJR7_ALLM37.940e-4066.67DNA-directed RNA polymerase subunit n=3 Tax=Allomy... [more]
W1Q7J6_OGAPD1.080e-3961.48DNA-directed RNA polymerase subunit n=9 Tax=Ogatae... [more]
A0A6A5AD01_9STRA1.220e-3961.79DNA-directed RNA polymerase n=2 Tax=Aphanomyces as... [more]
UPI000151A8B31.430e-3963.11hypothetical protein n=1 Tax=Meyerozyma guilliermo... [more]
RPB1_PICGU1.470e-3963.11DNA-directed RNA polymerase II subunit RPB1 (Fragm... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007073RNA polymerase Rpb1, domain 7PFAMPF04990RNA_pol_Rpb1_7coord: 85..123
e-value: 1.6E-10
score: 41.1
IPR038593RNA polymerase Rpb1, domain 7 superfamilyGENE3D3.30.1360.140coord: 84..123
e-value: 3.1E-10
score: 42.0
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 1..77
e-value: 4.4E-27
score: 95.2
NoneNo IPR availablePANTHERPTHR19376:SF52DNA-DIRECTED RNA POLYMERASE II SUBUNIT 1coord: 1..123
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 1..123
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..118

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13235contigH-canaliculatus_F_contig13235:2045..2900 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13235.2658.1mRNA_H-canaliculatus_F_contig13235.2658.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig13235 2045..2924 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig13235.2658.1 ID=prot_H-canaliculatus_F_contig13235.2658.1|Name=mRNA_H-canaliculatus_F_contig13235.2658.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=123bp
MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVR
TPSLTIYLEEREAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIFYDPD
PRSTVVDEDVELLEGHFDIQEEE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007081RNA_pol_Rpb1_5
IPR038593RNA_pol_Rpb1_7_sf
IPR007073RNA_pol_Rpb1_7