mRNA_H-canaliculatus_F_contig13235.2658.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig13235.2658.1 vs. uniprot
Match: A0A6H5L9Y2_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE) HSP 1 Score: 245 bits (626), Expect = 7.960e-73 Identity = 126/129 (97.67%), Postives = 128/129 (99.22%), Query Frame = 1
Query: 7 QVGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEEREAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIFYDPDPRSTVVDEDVELLEGHFDIQEEE 393
+VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEER AGADEAEGQEVAKRVVDILEYVTLGDITTSTQI+YDPDPRSTVVDEDVELLEGHFDIQEEE
Sbjct: 1116 KVGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEE 1244
BLAST of mRNA_H-canaliculatus_F_contig13235.2658.1 vs. uniprot
Match: D8LRY3_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI) HSP 1 Score: 245 bits (626), Expect = 8.120e-73 Identity = 126/129 (97.67%), Postives = 128/129 (99.22%), Query Frame = 1
Query: 7 QVGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEEREAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIFYDPDPRSTVVDEDVELLEGHFDIQEEE 393
+VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEER AGADEAEGQEVAKRVVDILEYVTLGDITTSTQI+YDPDPRSTVVDEDVELLEGHFDIQEEE
Sbjct: 1115 KVGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEE 1243
BLAST of mRNA_H-canaliculatus_F_contig13235.2658.1 vs. uniprot
Match: A0A836CHC4_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC4_9STRA) HSP 1 Score: 180 bits (456), Expect = 6.300e-50 Identity = 92/127 (72.44%), Postives = 104/127 (81.89%), Query Frame = 1
Query: 4 AQVGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEEREAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIFYDPDPRSTVVDEDVELLEGHFDIQ 384
A+V GEMCGVLAAQSIGEPITQMTLNTFH+AGVSAKNVTLGVPRVKEIINVA N RTPSLTIYL D + QE AKRVVD+LEY+TL D+T STQI+YDPDPR T+++ED E +E DI+
Sbjct: 1106 ARVSAGEMCGVLAAQSIGEPITQMTLNTFHYAGVSAKNVTLGVPRVKEIINVAANPRTPSLTIYL-----SPDSEQDQESAKRVVDMLEYITLADVTVSTQIYYDPDPRDTIIEEDKECVEAFLDIE 1227
BLAST of mRNA_H-canaliculatus_F_contig13235.2658.1 vs. uniprot
Match: A0A7S2KD87_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KD87_9STRA) HSP 1 Score: 157 bits (397), Expect = 6.980e-43 Identity = 80/129 (62.02%), Postives = 102/129 (79.07%), Query Frame = 1
Query: 4 AQVGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEEREAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIFYDPDPRSTVVDEDVELLEGHFDIQEE 390
A+V PGEM GVLAAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR+KEIINVAK V+TP LTIYL++ +G +VAK V ++EY LGD+T T+I+YDPDP +T+V +D E ++ ++++ EE
Sbjct: 250 AKVSPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTVKTPGLTIYLQDHVSG-----DADVAKLVHSMIEYTVLGDVTKLTEIYYDPDPVNTIVSKDREFVKDYYEMGEE 373
BLAST of mRNA_H-canaliculatus_F_contig13235.2658.1 vs. uniprot
Match: A0A7S2GUH7_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GUH7_9STRA) HSP 1 Score: 150 bits (380), Expect = 7.030e-43 Identity = 77/126 (61.11%), Postives = 96/126 (76.19%), Query Frame = 1
Query: 4 AQVGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEEREAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIFYDPDPRSTVVDEDVELLEGHFDI 381
A+V PGEM GVLAAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR+KEIINVAK V+TP LTIYL +G ++AK V ++EY LGD+ T+I+YDPD +TVV +DVE ++ +++
Sbjct: 28 AKVNPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTVKTPGLTIYLRPEVSG-----DADIAKTVHSLIEYTVLGDLVKLTEIYYDPDIENTVVPQDVEFVKDFYEL 148
BLAST of mRNA_H-canaliculatus_F_contig13235.2658.1 vs. uniprot
Match: W1Q7J6_OGAPD (DNA-directed RNA polymerase subunit n=9 Tax=Ogataea TaxID=461281 RepID=W1Q7J6_OGAPD) HSP 1 Score: 159 bits (401), Expect = 1.610e-42 Identity = 79/127 (62.20%), Postives = 103/127 (81.10%), Query Frame = 1
Query: 10 VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEEREAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIFYDPDPRSTVVDEDVELLEGHFDIQEE 390
V PGEM GV+AAQSIGEP TQMTLNTFH+AGVS+KNVTLGVPR+KEI+NVAKNV+TP+LT+YL+E + A E AK + +E+ TL ++T ST+I+YDPDPRSTVV++D++ +E +F I +E
Sbjct: 1019 VNPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNVKTPALTVYLKE-----EYASDIEKAKSIQSAIEHTTLKNVTASTEIYYDPDPRSTVVEDDIDTVEAYFAIPDE 1140
BLAST of mRNA_H-canaliculatus_F_contig13235.2658.1 vs. uniprot
Match: A0A1Y2EZK6_PROLT (DNA-directed RNA polymerase subunit n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2EZK6_PROLT) HSP 1 Score: 159 bits (401), Expect = 1.610e-42 Identity = 76/123 (61.79%), Postives = 101/123 (82.11%), Query Frame = 1
Query: 16 PGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEEREAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIFYDPDPRSTVVDEDVELLEGHFDIQ 384
PGEMCG LAAQSIGEP TQMTLNTFH+AGVS+KNVTLGVPR+KEI+NVAKN++TPSLT+YLE + A E AK++ +++Y TL +T++T+I YDPDPR+TV++ED + +E +F+I+
Sbjct: 1061 PGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTVYLEPEYSKAIED-----AKKIQSVIQYTTLRTVTSATEIHYDPDPRTTVIEEDRDFVEAYFEIE 1178
BLAST of mRNA_H-canaliculatus_F_contig13235.2658.1 vs. uniprot
Match: B5RSM9_DEBHA (DNA-directed RNA polymerase subunit n=7 Tax=Debaryomyces TaxID=4958 RepID=B5RSM9_DEBHA) HSP 1 Score: 159 bits (401), Expect = 1.610e-42 Identity = 81/127 (63.78%), Postives = 105/127 (82.68%), Query Frame = 1
Query: 10 VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEEREAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIFYDPDPRSTVVDEDVELLEGHFDIQEE 390
V PGEM GV+AAQSIGEP TQMTLNTFH+AGVS+KNVTLGVPR+KEI+NVAKN++TP+LT+YLE +E+ AD E AK V +E+ TL ++T++T+IFYDPDPRSTV++ED + +E +F I +E
Sbjct: 1064 VHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLE-KESAAD----IEKAKIVQSAIEHTTLKNVTSATEIFYDPDPRSTVIEEDYDTVEAYFAIPDE 1185
BLAST of mRNA_H-canaliculatus_F_contig13235.2658.1 vs. uniprot
Match: A0A1E4T1L4_9ASCO (DNA-directed RNA polymerase subunit n=1 Tax=[Candida] arabinofermentans NRRL YB-2248 TaxID=983967 RepID=A0A1E4T1L4_9ASCO) HSP 1 Score: 158 bits (399), Expect = 3.000e-42 Identity = 77/127 (60.63%), Postives = 103/127 (81.10%), Query Frame = 1
Query: 10 VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEEREAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIFYDPDPRSTVVDEDVELLEGHFDIQEE 390
V PGEM GV+AAQSIGEP TQMTLNTFH+AGVS+KNVTLGVPR+KEI+NVAKNV+TP+LT+YLEE + A E AK + +E+ TL ++T ST+I+YDPDP+ST++++D++ +E +F I +E
Sbjct: 1058 VNPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNVKTPALTVYLEE-----EYASDIENAKSIQSAIEHTTLKNVTASTEIYYDPDPKSTIIEDDIDTVEAYFAIPDE 1179
BLAST of mRNA_H-canaliculatus_F_contig13235.2658.1 vs. uniprot
Match: UPI000151A8B3 (hypothetical protein n=1 Tax=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) TaxID=294746 RepID=UPI000151A8B3) HSP 1 Score: 157 bits (398), Expect = 3.940e-42 Identity = 81/127 (63.78%), Postives = 102/127 (80.31%), Query Frame = 1
Query: 10 VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEEREAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIFYDPDPRSTVVDEDVELLEGHFDIQEE 390
V PGEM GV+AAQSIGEP TQMTLNTFH+AGVS+KNVTLGVPR+KEI+NVAKN++TP+LT+YLE+ D A E AK V +E+ TL ++T ST+IFYDPDPRSTV++ED + +E +F I +E
Sbjct: 325 VHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEK-----DIAADIEKAKVVQSAIEHTTLKNVTASTEIFYDPDPRSTVLEEDYDTVEAYFAIPDE 446 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13235.2658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig13235.2658.1 >prot_H-canaliculatus_F_contig13235.2658.1 ID=prot_H-canaliculatus_F_contig13235.2658.1|Name=mRNA_H-canaliculatus_F_contig13235.2658.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=123bp MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRback to top mRNA from alignment at H-canaliculatus_F_contig13235:2045..2924- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig13235.2658.1 ID=mRNA_H-canaliculatus_F_contig13235.2658.1|Name=mRNA_H-canaliculatus_F_contig13235.2658.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=880bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13235:2045..2924- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13235:2045..2924- >mRNA_H-canaliculatus_F_contig13235.2658.1 ID=mRNA_H-canaliculatus_F_contig13235.2658.1|Name=mRNA_H-canaliculatus_F_contig13235.2658.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=738bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13235:2045..2924- (Hapterophycus canaliculatus Oshoro5f female)back to top |