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Homology
BLAST of mRNA_H-canaliculatus_F_contig13202.2638.1 vs. uniprot
Match: A0A6H5KAS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS6_9PHAE) HSP 1 Score: 326 bits (835), Expect = 5.270e-97 Identity = 225/402 (55.97%), Postives = 263/402 (65.42%), Query Frame = 1
Query: 4 SAAAGAVLKGLGEAGGALMSMRDSEIARLRRAYARSELSREEMKRCLRALAVQLREGEDRTGALLAEREAALHEIGVKEAELAKKETLLQEGKARATVEVQEKEELVSSLKVENQALQAALERLRHDFQEERALRLRHDRRSSPATR------QRSQPSTPARLGIMGRMSLASRHGTPPSAAALAAAPAPAPGARGLEARGARRSEGGVGTRPPPKTPTRSGEMAGPELHNHLARSTPHRAGRASLGRGGR-PGGAPTVAAIA-----GWDSNHGGIGSRHNYPVLSAAGRAGSGGES--EEEERGQDRQGLPWILNTDQIWVGAVRPPHEVLVHLLDELEDLKVTHGGGSGSAEDLGKGFVAETEAFVEWSHRTGELQRVPPLESVDLPGEKKFTEGCLR 1167
S AAGAVLKGLGEAGGALMSMRDSEI+RLRRAYARSELSREEMKRCLRALAVQLREGEDRTGAL+A+REAAL ++ KE E AKKE +L+EGKARAT EVQ++EELV+SL+VEN+ALQAALERLR DFQEER+LRL+ S PA + +PSTP+RLGI R L SR G G G A S G RPP S ++G NH RSTP R G+ GGR GG+ +AA A GW S H GIGSRH+ + A AG G E+ +E Q +GLPWILNTDQ VL HLL+ELE +K G E+ +G +AET AF+EWSHRTGELQ +PPLE+VD+PGE+ FTEGCL+
Sbjct: 1059 STAAGAVLKGLGEAGGALMSMRDSEISRLRRAYARSELSREEMKRCLRALAVQLREGEDRTGALMADREAALCKLSAKEEEFAKKEAVLEEGKARATAEVQQQEELVTSLQVENEALQAALERLRLDFQEERSLRLQ----SGPAAAXXXXXXSKVRPSTPSRLGIFRRRGLTSRDG----GGTXXXXXXXXXGEEGQPA-----SRHGSVARPPATPSRHSRLLSGSSFLNHHIRSTPGRPGQ-----GGRLAGGSGAIAAAATPGGVGWSSVHRGIGSRHS----TTAAAAGGGSETWVQEVAGAQAVEGLPWILNTDQ-----------VLNHLLEELEGIKAMSG------EEKEEGSIAETAAFIEWSHRTGELQELPPLETVDMPGERAFTEGCLK 1421
BLAST of mRNA_H-canaliculatus_F_contig13202.2638.1 vs. uniprot
Match: D7FK06_ECTSI (CRAL/TRIO domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK06_ECTSI) HSP 1 Score: 242 bits (617), Expect = 1.270e-67 Identity = 174/389 (44.73%), Postives = 202/389 (51.93%), Query Frame = 1
Query: 4 SAAAGAVLKGLGEAGGALMSMRDSEIARLRRAYARSELSREEMKRCLRALAVQLREGEDRTGALLAEREAALHEIGVKEAELAKKETLLQEGKARATVEVQEKEELVSSLKVENQALQAALERLRHDFQEERALRLRHDRRSSPATRQRSQPSTPARLGIMGRMSLASRHGTPPSAAALAAAPAPAPGARGLEARGARRSEGGVGTRPPPKTPTRSGEMAGPELHNHLARSTPHRAGRASLGRGGRPGGAPTVAAIAGWDSNHGGIGSRHNYPVLSAAGRAGSGGESEEEERGQDRQGLPWILNTDQIWVGAVRPPHEVLVHLLDELEDLKVTHGGGSGSAEDLGKGFVAETEAFVEWSHRTGELQRVPPLESVDLPGEKKFTEGCLRV 1170
S AAGAVLKGLGEAGGALMSMRDSEI+RLRRAYARSELSREEMKRCLRALAVQLREGEDRTGALLA+REAAL ++ KE E KKE +L+EGKARAT EVQ+KEELV+SL+VEN+ALQAALERLR DFQEER+LRL+ P+AAA AAA + + W + ER + W RPPHEVL HLL+ELE +K GG + +G +AET AF+EWSHRTGELQ VPPLE+VD+PGE+ FTEGCL++
Sbjct: 999 STAAGAVLKGLGEAGGALMSMRDSEISRLRRAYARSELSREEMKRCLRALAVQLREGEDRTGALLADREAALCKLNAKEEEFTKKEAVLEEGKARATAEVQQKEELVTSLQVENEALQAALERLRLDFQEERSLRLQSG----------------------------------PAAAAAAAA-----------------------------------------------------------------------SKVDTWKAR---------------------------AER--------------EAWADGARPPHEVLNHLLEELEGIKAMSGG------EQEEGSIAETAAFIEWSHRTGELQEVPPLETVDMPGERAFTEGCLKL 1235
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 246.1 |
| Seed ortholog evalue | 2.7e-62 |
| Seed eggNOG ortholog | 2880.D7FK06 |
| KEGG ko | ko:K15335,ko:K19625 |
| EggNOG free text desc. | macromolecule localization |
| EggNOG OGs | KOG1471@1,KOG1471@2759 |
| EC | 2.1.1.203 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01000,ko03016 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1170 |
| Cds size | 1170 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929059.6469016-CDS-H-canaliculatus_F_contig13202:464..631 | 1622929059.6469016-CDS-H-canaliculatus_F_contig13202:464..631 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13202 465..631 + |
| 1696845664.097718-CDS-H-canaliculatus_F_contig13202:464..631 | 1696845664.097718-CDS-H-canaliculatus_F_contig13202:464..631 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13202 465..631 + |
| 1622929059.663538-CDS-H-canaliculatus_F_contig13202:1151..1296 | 1622929059.663538-CDS-H-canaliculatus_F_contig13202:1151..1296 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13202 1152..1296 + |
| 1696845664.108664-CDS-H-canaliculatus_F_contig13202:1151..1296 | 1696845664.108664-CDS-H-canaliculatus_F_contig13202:1151..1296 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13202 1152..1296 + |
| 1622929059.6779976-CDS-H-canaliculatus_F_contig13202:1794..2406 | 1622929059.6779976-CDS-H-canaliculatus_F_contig13202:1794..2406 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13202 1795..2406 + |
| 1696845664.125753-CDS-H-canaliculatus_F_contig13202:1794..2406 | 1696845664.125753-CDS-H-canaliculatus_F_contig13202:1794..2406 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13202 1795..2406 + |
| 1622929059.6884792-CDS-H-canaliculatus_F_contig13202:2855..2965 | 1622929059.6884792-CDS-H-canaliculatus_F_contig13202:2855..2965 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13202 2856..2965 + |
| 1696845664.1385376-CDS-H-canaliculatus_F_contig13202:2855..2965 | 1696845664.1385376-CDS-H-canaliculatus_F_contig13202:2855..2965 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13202 2856..2965 + |
| 1622929059.7021775-CDS-H-canaliculatus_F_contig13202:3034..3170 | 1622929059.7021775-CDS-H-canaliculatus_F_contig13202:3034..3170 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13202 3035..3170 + |
| 1696845664.1482081-CDS-H-canaliculatus_F_contig13202:3034..3170 | 1696845664.1482081-CDS-H-canaliculatus_F_contig13202:3034..3170 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig13202 3035..3170 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig13202.2638.1 >prot_H-canaliculatus_F_contig13202.2638.1 ID=prot_H-canaliculatus_F_contig13202.2638.1|Name=mRNA_H-canaliculatus_F_contig13202.2638.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=390bp
SSAAAGAVLKGLGEAGGALMSMRDSEIARLRRAYARSELSREEMKRCLRA LAVQLREGEDRTGALLAEREAALHEIGVKEAELAKKETLLQEGKARATVE VQEKEELVSSLKVENQALQAALERLRHDFQEERALRLRHDRRSSPATRQR SQPSTPARLGIMGRMSLASRHGTPPSAAALAAAPAPAPGARGLEARGARR SEGGVGTRPPPKTPTRSGEMAGPELHNHLARSTPHRAGRASLGRGGRPGG APTVAAIAGWDSNHGGIGSRHNYPVLSAAGRAGSGGESEEEERGQDRQGL PWILNTDQIWVGAVRPPHEVLVHLLDELEDLKVTHGGGSGSAEDLGKGFV AETEAFVEWSHRTGELQRVPPLESVDLPGEKKFTEGCLRV back to topmRNA from alignment at H-canaliculatus_F_contig13202:465..3170+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig13202.2638.1 ID=mRNA_H-canaliculatus_F_contig13202.2638.1|Name=mRNA_H-canaliculatus_F_contig13202.2638.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2706bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13202:465..3170+ (Hapterophycus canaliculatus Oshoro5f female) TCCTCCGCGGCGGCGGGGGCGGTGCTGAAGGGACTGGGGGAGGCCGGGGG
CGCCCTCATGTCCATGCGGGACTCGGAGATCGCGAGGCTGAGGAGGGCGT
ACGCCCGGTCGGAGCTGTCGAGGGAGGAGATGAAGCGCTGCCTGCGGGCG
CTGGCGGTGCAGCTGAGGTGTGTTTTGTCGGTTGGATTGGGTTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
CGTTTGTGTGTGTGGTCGTGAGTTTTGAGAAGGATTCGTCCGTGATCTTC
ATTCCCATCTTTTTGTGCGGCCGTGCACGGTGGTGGCGCTCGTGTTTGGC
TCCGTCTCGACAGCGTTTGCTGTCGGCGGCGCCTGAACGACGCCGTGGCG
TTGCCTGGGGGGGGGGAAATTCGCGGCGTTTCAGGACGGGGGCGGGCTCG
GTGGGAGGGCGCGAAGGGGGCAATAGCTAGGGGTTGATGTGGGCTGAGTA
GCGTGCCGCTCGTTGCCTGTGCCAGGGCGCTGGTGGCCCAATCGAGGTGC
TCTGTTCGACCCCTGTGCCTGCCCATCTCTCCCCCACGGCGGCCCCTACA
ACGTACTTGTACTGTTTTGTGTGGTCGATTCCGCCCCTCACTTCACCCCC
TTGTCCTGTGCTTCAACCTTTGTGCGCGTCTACTCAGGGAGGGAGAGGAT
AGGACGGGGGCGTTGCTGGCGGAGCGGGAAGCGGCGCTGCACGAAATCGG
CGTCAAGGAAGCGGAGCTTGCCAAGAAGGAGACGCTGCTCCAAGAGGGGA
AGGCCCGCGCGACCGTCGAGGTTCAGGAGAAGGTAAAACGTGTGTCTTGG
CTGTTGGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTTTGCTATCCGAGCTAGCCTGTTAG
ACGTCTGTGATTTTGCTATCCGAGCAAGAAGACGTCATTCCCTGCGAAAG
AAGCACGAAGAGACGAGGTGCTTCGGGAGATCTCCCATGAAGGTGGTGGT
TGGGGTGGGGGGGAGATATCTAGGTGCTGTGTGAGTGAATGAGCTTGCAC
GTATATCTGTCGATGCGTCATCGTCGGCGTCGGCGCCGGCGTCGGTGTTG
CTGTTGTCGTTGTCGTTGCTGTTGTTGTTGTTGTGTCACACCGACGATTC
TGCCGAACAGACGGGAAACCTTGCGCCTTCTTCGCAAGAGGAGCATTCTG
TTTTATACTTGCGGCAACAATTTCGTCGGAAAGAGAAACTCTCTAGCCCC
CCCCCCTCCCCCCGGCTTCCCCCCCCCCAGGAGGAGTTGGTATCGAGCCT
AAAGGTGGAGAACCAAGCGCTGCAGGCCGCCCTCGAGAGGCTGCGGCACG
ACTTCCAGGAGGAGAGAGCCCTGCGGCTCCGGCACGACAGAAGGAGTTCT
CCCGCCACCCGCCAGAGGTCCCAGCCGAGCACCCCTGCACGCCTCGGCAT
CATGGGAAGGATGAGCCTGGCGAGCCGCCACGGCACGCCGCCCTCTGCCG
CCGCTTTGGCGGCGGCGCCGGCGCCGGCGCCGGGAGCACGAGGGTTAGAG
GCGAGAGGGGCTCGGAGGTCTGAAGGAGGAGTGGGTACCCGGCCGCCGCC
GAAGACCCCCACTAGGAGCGGCGAAATGGCGGGGCCGGAGCTCCACAACC
ACCTGGCGCGGTCCACTCCGCATAGGGCGGGGCGCGCTTCGCTGGGGAGG
GGGGGGCGGCCGGGAGGCGCGCCCACCGTAGCCGCGATCGCGGGGTGGGA
TAGCAACCACGGCGGTATAGGTTCGAGGCACAACTATCCCGTGCTCTCGG
CGGCAGGGAGGGCCGGATCGGGGGGGGAGAGTGAGGAGGAGGAGAGAGGG
CAAGACCGCCAGGGACTGCCGTGGATTCTCAACACCGATCAGGTCCGTGC
TCGGTGAGCGGTGAGCTCCGTGCCCGACGCGGAAGGACGAAGAGAGGGGC
TCCCTCCTCTGTCGTTTGTGGGGACGGATAGATGGCGATGGCTGTGACTC
CCCTGCGCGAGGGAAGCAGGTGTTGCTCCCCTCCTTTCCACTCGCTCACG
CACGTTCGCCCGGCCGTCCCGCACACACACACACACACACACACACACAC
CGCTACCCTTTTGCCCGAAGAGCCTCTTTACGTTCAGGCAGGTGTGGCAA
GGGCGCTCTCTCTCTGAATGACCCACCTTTCCATCCTCACCTAGAGCGTG
AGCGCACGCATCCACCAATCCGTCCAGATCCGAACGATTAAAATGTCCTT
ACGAGCGCGACTGCGTGCGCGCTGTGACGCTACCGCCCCGACCGCCCCCT
CCCAAAGCCTGCTTAACCCCTCCTGCCCGCCCGTTCGCTAGATATGGGTC
GGCGCCGTCCGGCCGCCGCACGAGGTGCTAGTCCACCTCCTGGACGAGCT
GGAGGACCTCAAGGTTACCCACGGCGGGGGCAGCGGCTCGGCCGAGGACT
TGTGCGCAACTTCTCCACCGGAAGACAGCGGTGCAGAGGATGGGGGAAGT
CCGGGGCAGCGAAGAGGAAGAGGGAAGGGCTTTGTGGCGGAGACGGAGGC
GTTCGTGGAGTGGAGCCACCGCACCGGGGAGCTGCAGAGGGTGCCCCCGC
TCGAGTCGGTGGACCTCCCCGGCGAGAAGAAGTTCACGGAGGGGTGTCTG
CGGGTG back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig13202:465..3170+ >mRNA_H-canaliculatus_F_contig13202.2638.1 ID=mRNA_H-canaliculatus_F_contig13202.2638.1|Name=mRNA_H-canaliculatus_F_contig13202.2638.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2340bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13202:465..3170+ (Hapterophycus canaliculatus Oshoro5f female) TCCTCCGCGGCGGCGGGGGCGGTGCTGAAGGGACTGGGGGAGGCCGGGGG CGCCCTCATGTCCATGCGGGACTCGGAGATCGCGAGGCTGAGGAGGGCGT ACGCCCGGTCGGAGCTGTCGAGGGAGGAGATGAAGCGCTGCCTGCGGGCG CTGGCGGTGCAGCTGAGTCCTCCGCGGCGGCGGGGGCGGTGCTGAAGGGA CTGGGGGAGGCCGGGGGCGCCCTCATGTCCATGCGGGACTCGGAGATCGC GAGGCTGAGGAGGGCGTACGCCCGGTCGGAGCTGTCGAGGGAGGAGATGA AGCGCTGCCTGCGGGCGCTGGCGGTGCAGCTGAGGGAGGGAGAGGATAGG ACGGGGGCGTTGCTGGCGGAGCGGGAAGCGGCGCTGCACGAAATCGGCGT CAAGGAAGCGGAGCTTGCCAAGAAGGAGACGCTGCTCCAAGAGGGGAAGG CCCGCGCGACCGTCGAGGTTCAGGAGAAGGGAGGGAGAGGATAGGACGGG GGCGTTGCTGGCGGAGCGGGAAGCGGCGCTGCACGAAATCGGCGTCAAGG AAGCGGAGCTTGCCAAGAAGGAGACGCTGCTCCAAGAGGGGAAGGCCCGC GCGACCGTCGAGGTTCAGGAGAAGGAGGAGTTGGTATCGAGCCTAAAGGT GGAGAACCAAGCGCTGCAGGCCGCCCTCGAGAGGCTGCGGCACGACTTCC AGGAGGAGAGAGCCCTGCGGCTCCGGCACGACAGAAGGAGTTCTCCCGCC ACCCGCCAGAGGTCCCAGCCGAGCACCCCTGCACGCCTCGGCATCATGGG AAGGATGAGCCTGGCGAGCCGCCACGGCACGCCGCCCTCTGCCGCCGCTT TGGCGGCGGCGCCGGCGCCGGCGCCGGGAGCACGAGGGTTAGAGGCGAGA GGGGCTCGGAGGTCTGAAGGAGGAGTGGGTACCCGGCCGCCGCCGAAGAC CCCCACTAGGAGCGGCGAAATGGCGGGGCCGGAGCTCCACAACCACCTGG CGCGGTCCACTCCGCATAGGGCGGGGCGCGCTTCGCTGGGGAGGGGGGGG CGGCCGGGAGGCGCGCCCACCGTAGCCGCGATCGCGGGGTGGGATAGCAA CCACGGCGGTATAGGTTCGAGGCACAACTATCCCGTGCTCTCGGCGGCAG GGAGGGCCGGATCGGGGGGGGAGAGTGAGGAGGAGGAGAGAGGGCAAGAC CGCCAGGGACTGCCGTGGATTCTCAACACCGATCAGGAGGAGTTGGTATC GAGCCTAAAGGTGGAGAACCAAGCGCTGCAGGCCGCCCTCGAGAGGCTGC GGCACGACTTCCAGGAGGAGAGAGCCCTGCGGCTCCGGCACGACAGAAGG AGTTCTCCCGCCACCCGCCAGAGGTCCCAGCCGAGCACCCCTGCACGCCT CGGCATCATGGGAAGGATGAGCCTGGCGAGCCGCCACGGCACGCCGCCCT CTGCCGCCGCTTTGGCGGCGGCGCCGGCGCCGGCGCCGGGAGCACGAGGG TTAGAGGCGAGAGGGGCTCGGAGGTCTGAAGGAGGAGTGGGTACCCGGCC GCCGCCGAAGACCCCCACTAGGAGCGGCGAAATGGCGGGGCCGGAGCTCC ACAACCACCTGGCGCGGTCCACTCCGCATAGGGCGGGGCGCGCTTCGCTG GGGAGGGGGGGGCGGCCGGGAGGCGCGCCCACCGTAGCCGCGATCGCGGG GTGGGATAGCAACCACGGCGGTATAGGTTCGAGGCACAACTATCCCGTGC TCTCGGCGGCAGGGAGGGCCGGATCGGGGGGGGAGAGTGAGGAGGAGGAG AGAGGGCAAGACCGCCAGGGACTGCCGTGGATTCTCAACACCGATCAGAT ATGGGTCGGCGCCGTCCGGCCGCCGCACGAGGTGCTAGTCCACCTCCTGG ACGAGCTGGAGGACCTCAAGGTTACCCACGGCGGGGGCAGCGGCTCGGCC GAGGACTTATATGGGTCGGCGCCGTCCGGCCGCCGCACGAGGTGCTAGTC CACCTCCTGGACGAGCTGGAGGACCTCAAGGTTACCCACGGCGGGGGCAG CGGCTCGGCCGAGGACTTAGGGAAGGGCTTTGTGGCGGAGACGGAGGCGT TCGTGGAGTGGAGCCACCGCACCGGGGAGCTGCAGAGGGTGCCCCCGCTC GAGTCGGTGGACCTCCCCGGCGAGAAGAAGTTCACGGAGGGGTGTCTGCG GGTGAGGGAAGGGCTTTGTGGCGGAGACGGAGGCGTTCGTGGAGTGGAGC CACCGCACCGGGGAGCTGCAGAGGGTGCCCCCGCTCGAGTCGGTGGACCT CCCCGGCGAGAAGAAGTTCACGGAGGGGTGTCTGCGGGTG back to top
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