mRNA_H-canaliculatus_F_contig132.2624.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig132.2624.1
Unique NamemRNA_H-canaliculatus_F_contig132.2624.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig132.2624.1 vs. uniprot
Match: D7G843_ECTSI (Heat shock protein 90 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G843_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 2.140e-52
Identity = 105/119 (88.24%), Postives = 111/119 (93.28%), Query Frame = 1
Query:    1 AGRASNVASLRMMAETAEATEEAAVEDGEERFEFQAEVGRVMDIIINSLYSNRDVFLRELISNAADACDKKRFLAVTETEGDEGGAAD-PEYRIRIRADKDAKTLIIEDSGVGMTKDEL 354
            AGR   VA+LRM AETAEATEEAAVEDGEERFEFQAEVGRVMDIIINSLYSNRDVFLRELISN+ADACDKKRFLAVT++  DEGG+ D PEYRIR+RADKDAKTLIIEDSGVGMTKDEL
Sbjct:   73 AGR--RVAALRM-AETAEATEEAAVEDGEERFEFQAEVGRVMDIIINSLYSNRDVFLRELISNSADACDKKRFLAVTDSGADEGGSDDDPEYRIRVRADKDAKTLIIEDSGVGMTKDEL 188          
BLAST of mRNA_H-canaliculatus_F_contig132.2624.1 vs. uniprot
Match: A0A835ZF40_9STRA (Heat shock protein 90 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF40_9STRA)

HSP 1 Score: 137 bits (344), Expect = 3.540e-35
Identity = 78/103 (75.73%), Postives = 86/103 (83.50%), Query Frame = 1
Query:   46 TAEATEEAAVEDGEERFEFQAEVGRVMDIIINSLYSNRDVFLRELISNAADACDKKRFLAVTETEGDEGGAADPEYRIRIRADKDAKTLIIEDSGVGMTKDEL 354
            TAEA  E A    EE FEFQAEV RVMDIIINSLYSNRDVFLREL+SNAADACDKKRFL++TE  GD G A   E+RIR++ADKDA+TL IEDSG+GMTKDEL
Sbjct:    3 TAEAEAEPATAQ-EETFEFQAEVTRVMDIIINSLYSNRDVFLRELVSNAADACDKKRFLSITE--GDGGDAT--EFRIRVKADKDARTLTIEDSGIGMTKDEL 100          
BLAST of mRNA_H-canaliculatus_F_contig132.2624.1 vs. uniprot
Match: A0A7S2IKR0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2IKR0_9DINO)

HSP 1 Score: 128 bits (321), Expect = 1.190e-34
Identity = 75/116 (64.66%), Postives = 90/116 (77.59%), Query Frame = 1
Query:   10 ASNVASLRMMAETAEATEEAAVEDGEERFEFQAEVGRVMDIIINSLYSNRDVFLRELISNAADACDKKRFLAVTETEGDEGGAADPE-YRIRIRADKDAKTLIIEDSGVGMTKDEL 354
            AS++ + R  AETA ATE      G E F+FQAEVG+VMDII+NSLYSN+DVFLREL+SNAADACDKKRFLA+TE +      + PE  ++RIR DKDA+TLIIED+GVGM K EL
Sbjct:    4 ASSLLARRAAAETATATEA-----GVETFDFQAEVGKVMDIIVNSLYSNKDVFLRELVSNAADACDKKRFLALTEYD------SPPEPMKLRIRTDKDARTLIIEDNGVGMKKSEL 108          
BLAST of mRNA_H-canaliculatus_F_contig132.2624.1 vs. uniprot
Match: B8BY36_THAPS (Heat shock protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BY36_THAPS)

HSP 1 Score: 131 bits (329), Expect = 4.430e-33
Identity = 66/94 (70.21%), Postives = 79/94 (84.04%), Query Frame = 1
Query:   73 VEDGEERFEFQAEVGRVMDIIINSLYSNRDVFLRELISNAADACDKKRFLAVTETEGDEGGAADPEYRIRIRADKDAKTLIIEDSGVGMTKDEL 354
            VE+G E++EFQAEVGRVMDIIINSLYSNRDVFLREL+SN+ADACDKKRFL++T +   +G +      I+I+ADKDA T+ IEDSGVGMTK EL
Sbjct:   61 VEEGVEKYEFQAEVGRVMDIIINSLYSNRDVFLRELVSNSADACDKKRFLSITSSADTDGASVGDSPSIQIKADKDAMTVTIEDSGVGMTKSEL 154          
BLAST of mRNA_H-canaliculatus_F_contig132.2624.1 vs. uniprot
Match: A0A7S3MHE6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHE6_9STRA)

HSP 1 Score: 118 bits (295), Expect = 4.040e-32
Identity = 66/101 (65.35%), Postives = 78/101 (77.23%), Query Frame = 1
Query:   55 ATEEAAVEDGEERFEFQAEVGRVMDIIINSLYSNRDVFLRELISNAADACDKKRFLAVTETEGDEGGAADPE-YRIRIRADKDAKTLIIEDSGVGMTKDEL 354
            ATE A      E +EFQAEVG+VMDII+NSLYSN+DVFLREL+SNAADACDKKRFLA+TE++        PE  ++RIR DKD + LIIED+GVGM K EL
Sbjct:    3 ATETAEAGTQVENYEFQAEVGKVMDIIVNSLYSNKDVFLRELVSNAADACDKKRFLALTESD------TPPEPMKLRIRTDKDKRLLIIEDNGVGMEKAEL 97          
BLAST of mRNA_H-canaliculatus_F_contig132.2624.1 vs. uniprot
Match: A0A7S2CEL2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CEL2_9STRA)

HSP 1 Score: 118 bits (295), Expect = 6.280e-32
Identity = 72/109 (66.06%), Postives = 82/109 (75.23%), Query Frame = 1
Query:   28 LRMMAETAEATEEAAVEDGEERFEFQAEVGRVMDIIINSLYSNRDVFLRELISNAADACDKKRFLAVTETEGDEGGAADPEYRIRIRADKDAKTLIIEDSGVGMTKDEL 354
            LRM   TAEA   AA  DGE  FEFQAEVGRVMDIIINSLY ++DVFLREL+SNAADACDK+RFLA+T       G    +  I I+ADK+A TL IED+G+GMTKDEL
Sbjct:    2 LRMS--TAEADAPAA--DGE-TFEFQAEVGRVMDIIINSLYQDKDVFLRELVSNAADACDKRRFLALT------AGQPAEDINIVIKADKEANTLTIEDAGIGMTKDEL 99          
BLAST of mRNA_H-canaliculatus_F_contig132.2624.1 vs. uniprot
Match: A0A812VL78_SYMPI (HspD protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812VL78_SYMPI)

HSP 1 Score: 127 bits (319), Expect = 9.830e-32
Identity = 75/111 (67.57%), Postives = 86/111 (77.48%), Query Frame = 1
Query:   25 SLRMMAETAEATEEAAVEDGEERFEFQAEVGRVMDIIINSLYSNRDVFLRELISNAADACDKKRFLAVTETEGDEGGAADPE-YRIRIRADKDAKTLIIEDSGVGMTKDEL 354
            SL   AE+AE      V DGEE FEFQAEVGRVMDIIINSLYSN+DVFLREL+SNAADACDKKRFLA+TE++      A PE  ++RI  +KD + LIIED+GVGM KDEL
Sbjct:   53 SLARRAESAETATATEVADGEE-FEFQAEVGRVMDIIINSLYSNKDVFLRELVSNAADACDKKRFLALTESD------APPEPMKLRINTNKDDRLLIIEDNGVGMLKDEL 156          
BLAST of mRNA_H-canaliculatus_F_contig132.2624.1 vs. uniprot
Match: A0A7S0HNJ2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HNJ2_9CRYP)

HSP 1 Score: 124 bits (312), Expect = 1.090e-31
Identity = 68/89 (76.40%), Postives = 76/89 (85.39%), Query Frame = 1
Query:   88 ERFEFQAEVGRVMDIIINSLYSNRDVFLRELISNAADACDKKRFLAVTETEGDEGGAADPEYRIRIRADKDAKTLIIEDSGVGMTKDEL 354
            E FEFQAEV RVMDIIINSLYS++DVFLREL+SNAADACDKKRFLA+TE +G    +AD    IRI+ADKD K LIIEDSGVGMTK+EL
Sbjct:   71 ETFEFQAEVSRVMDIIINSLYSDKDVFLRELVSNAADACDKKRFLAITENKG----SAD-NLEIRIQADKDQKKLIIEDSGVGMTKEEL 154          
BLAST of mRNA_H-canaliculatus_F_contig132.2624.1 vs. uniprot
Match: A0A7S4UPY7_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UPY7_9DINO)

HSP 1 Score: 121 bits (303), Expect = 3.000e-31
Identity = 65/96 (67.71%), Postives = 78/96 (81.25%), Query Frame = 1
Query:   70 AVEDGEERFEFQAEVGRVMDIIINSLYSNRDVFLRELISNAADACDKKRFLAVTETEGDEGGAADPE-YRIRIRADKDAKTLIIEDSGVGMTKDEL 354
            A +   E F+FQAEVG+VMDII+NSLYSN+DVFLREL+SNAADACDKKRFLA+TE++      A PE  ++RIR DKDA+TL IED+GVGM K EL
Sbjct:  112 AADSAVETFDFQAEVGKVMDIIVNSLYSNKDVFLRELVSNAADACDKKRFLALTESD------APPEPMKLRIRTDKDARTLTIEDNGVGMQKAEL 201          
BLAST of mRNA_H-canaliculatus_F_contig132.2624.1 vs. uniprot
Match: A0A7S2XU67_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XU67_9STRA)

HSP 1 Score: 125 bits (315), Expect = 3.470e-31
Identity = 67/89 (75.28%), Postives = 76/89 (85.39%), Query Frame = 1
Query:   88 ERFEFQAEVGRVMDIIINSLYSNRDVFLRELISNAADACDKKRFLAVTETEGDEGGAADPEYRIRIRADKDAKTLIIEDSGVGMTKDEL 354
            E FEFQAEVGRVMDIIINSLYS++DVFLREL SNAADACDKKRFL++T +E D   A  P+  I+I+ADK+A TL IEDSGVGMTKDEL
Sbjct:   65 ETFEFQAEVGRVMDIIINSLYSDKDVFLRELTSNAADACDKKRFLSITSSEDD---ADMPKPEIKIKADKEANTLTIEDSGVGMTKDEL 150          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig132.2624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G843_ECTSI2.140e-5288.24Heat shock protein 90 n=2 Tax=Ectocarpus TaxID=287... [more]
A0A835ZF40_9STRA3.540e-3575.73Heat shock protein 90 n=1 Tax=Tribonema minus TaxI... [more]
A0A7S2IKR0_9DINO1.190e-3464.66Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
B8BY36_THAPS4.430e-3370.21Heat shock protein n=1 Tax=Thalassiosira pseudonan... [more]
A0A7S3MHE6_9STRA4.040e-3265.35Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2CEL2_9STRA6.280e-3266.06Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A812VL78_SYMPI9.830e-3267.57HspD protein n=1 Tax=Symbiodinium pilosum TaxID=29... [more]
A0A7S0HNJ2_9CRYP1.090e-3176.40Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A7S4UPY7_9DINO3.000e-3167.71Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S2XU67_9STRA3.470e-3175.28Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig132contigH-canaliculatus_F_contig132:3403..4710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.8
Seed ortholog evalue5.8e-45
Seed eggNOG ortholog2880.D7G843
KEGG koko:K09487
KEGG Pathwayko04141,ko04151,ko04626,ko04657,ko04915,ko04918,ko05200,ko05215,ko05418,map04141,map04151,map04626,map04657,map04915,map04918,map05200,map05215,map05418
GOsGO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0019538,GO:0019941,GO:0030163,GO:0030433,GO:0033554,GO:0034976,GO:0036503,GO:0042221,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0050896,GO:0051603,GO:0051716,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901698
EggNOG free text desc.unfolded protein binding
EggNOG OGsCOG0326@1,KOG0019@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHeat shock protein 90
Ec32 orthologEc-12_001560.1
Exons2
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929057.342396-CDS-H-canaliculatus_F_contig132:3402..34591622929057.342396-CDS-H-canaliculatus_F_contig132:3402..3459Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 3403..3459 -
1696845663.215792-CDS-H-canaliculatus_F_contig132:3402..34591696845663.215792-CDS-H-canaliculatus_F_contig132:3402..3459Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 3403..3459 -
1622929057.359147-CDS-H-canaliculatus_F_contig132:4413..47101622929057.359147-CDS-H-canaliculatus_F_contig132:4413..4710Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 4414..4710 -
1696845663.2269714-CDS-H-canaliculatus_F_contig132:4413..47101696845663.2269714-CDS-H-canaliculatus_F_contig132:4413..4710Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig132 4414..4710 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig132.2624.1prot_H-canaliculatus_F_contig132.2624.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig132 3403..4710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig132.2624.1

>prot_H-canaliculatus_F_contig132.2624.1 ID=prot_H-canaliculatus_F_contig132.2624.1|Name=mRNA_H-canaliculatus_F_contig132.2624.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=118bp
AGRASNVASLRMMAETAEATEEAAVEDGEERFEFQAEVGRVMDIIINSLY
SNRDVFLRELISNAADACDKKRFLAVTETEGDEGGAADPEYRIRIRADKD
AKTLIIEDSGVGMTKDEL
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mRNA from alignment at H-canaliculatus_F_contig132:3403..4710-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig132.2624.1 ID=mRNA_H-canaliculatus_F_contig132.2624.1|Name=mRNA_H-canaliculatus_F_contig132.2624.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1308bp|location=Sequence derived from alignment at H-canaliculatus_F_contig132:3403..4710- (Hapterophycus canaliculatus Oshoro5f female)
GCCGGCCGTGCCAGCAACGTGGCGTCGCTCCGGATGATGGCGGAGACCGC GGAGGCAACGGAGGAAGCCGCAGTAGAGGACGGGGAGGAGCGGTTCGAGT TCCAGGCCGAAGTCGGGCGCGTGATGGACATCATCATCAACTCGCTGTAC TCCAACAGGGACGTGTTCCTCAGGGAGCTCATCTCGAACGCGGCGGACGC CTGCGACAAGAAGCGATTCCTTGCGGTTACCGAGACGGAGGGCGACGAGG GGGGAGCCGCCGACCCTGAGTACCGGATCCGTATCCGCGCAGACAAGGTC AGCCAGTCCGCCACTTCCTCTCTCCTCTCGCAAACGCGATCAATCTGGTC GACATCGATTGCTGGGTGATGGCCCGCAAGGGTCGTGGTGTGTTGGGGAA ACAGCCTCATCGTGGTTGAACTCGCAAGTTGATCTTACGTGGCAATCGCT GGGTGGCTTAGAGCTGATGTGTTTCTCCTTTCCCACCCCGCAGGTTACCT TGTACTGTAGGCCTCTCTTACCCCTGCGCCCTACTCGTCCGGCCCCGACG GGGAGGCGGAGGAGCCGGCCATGGACGGCGACATGGATGTTGCGTTTCCT CGATTGCGAACCGAGTCGTTCATGCTGTTTCTGTGCGCACCGAAGTTCGT TCCAAATCTGAAAGTCATATGAACGGTTGGGAGTGCGTCCGATGGCGATT TGTTGTGTCCCTGTCGAATGTTGCTGCGATGTATGGATTGACCGCCAACT CTCGCCGTACGGAGTGCCACAGCGGAGGTCTGGCTGCAATGTAACCAATG ACGAAGAATCGTGTGGCGGTCTGGCTCCACCGGTCGGCGTTTTGCTCTGT TGGGTTGGTCGACTTCGCGACTTCGCACACGCGTAAGCATCCCACGCGTT CTTTTTTTCTGGCGTCTCCGGAATATTTCCAGAAAAACCATCTACATCAG CAGCGGATCATGCATCGCGTTCATGTGAAAGCATGACAGCAGCAATTGGC TCCCTTACAGAAGAAGTCTGCGCCGGCTGTCCAACAAGCTCCGTCTCTGC CCCGAATATTGTCCCACTGGGAATTCAGAACGATTTTTTGTTGGCCCTGC TGCGATAACGGCCCTCGATGTTTCACTCTAATGAAGCATTTTAAATTATA TTTTCCACGCATACAAGTATCTACTCCTCCTACCGCACAACACTTTTGTG ACACTCAGCTCATGACATGTCCCTCCGAATGCATCGTAACCTGTCTCGCA GGACGCTAAAACGTTGATCATCGAGGACTCGGGCGTGGGCATGACCAAGG ACGAGTTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig132:3403..4710-

>mRNA_H-canaliculatus_F_contig132.2624.1 ID=mRNA_H-canaliculatus_F_contig132.2624.1|Name=mRNA_H-canaliculatus_F_contig132.2624.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=708bp|location=Sequence derived from alignment at H-canaliculatus_F_contig132:3403..4710- (Hapterophycus canaliculatus Oshoro5f female)
GCCGGCCGTGCCAGCAACGTGGCGTCGCTCCGGATGATGGCGGAGACCGC
GGAGGCAACGGAGGAAGCCGCAGTAGAGGACGGGGAGGAGCGGTTCGAGT
TCCAGGCCGAAGTCGGGCGCGTGATGGACATCATCATCAACTCGCTGTAC
TCCAACAGGGACGTGTTCCTCAGGGAGCTCATCTCGAACGCGGCGGACGC
CTGCGACAAGAAGCGATTCCTTGCGGTTACCGAGACGGAGGGCGACGAGG
GGGGAGCCGCCGACCCTGAGTACCGGATCCGTATCCGCGCAGACAAGGCC
GGCCGTGCCAGCAACGTGGCGTCGCTCCGGATGATGGCGGAGACCGCGGA
GGCAACGGAGGAAGCCGCAGTAGAGGACGGGGAGGAGCGGTTCGAGTTCC
AGGCCGAAGTCGGGCGCGTGATGGACATCATCATCAACTCGCTGTACTCC
AACAGGGACGTGTTCCTCAGGGAGCTCATCTCGAACGCGGCGGACGCCTG
CGACAAGAAGCGATTCCTTGCGGTTACCGAGACGGAGGGCGACGAGGGGG
GAGCCGCCGACCCTGAGTACCGGATCCGTATCCGCGCAGACAAGGACGCT
AAAACGTTGATCATCGAGGACTCGGGCGTGGGCATGACCAAGGACGAGTT
GGACGCTAAAACGTTGATCATCGAGGACTCGGGCGTGGGCATGACCAAGG
ACGAGTTG
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