mRNA_H-canaliculatus_F_contig1318.2614.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1318.2614.1
Unique NamemRNA_H-canaliculatus_F_contig1318.2614.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1318.2614.1 vs. uniprot
Match: D8LCN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN7_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 1.350e-41
Identity = 92/145 (63.45%), Postives = 103/145 (71.03%), Query Frame = 2 
Query:  134 LLLDQASKAAACVCPTVYFTPCQYVQGAAVPAPTTVV-RAVVLSKSDQVDINDDITYTADVTTVYSGS--NADEITFITGGNSAACGVDLRIGEEYILGLYPAVADPFDSTD--VTGLLTVGACDLARLWSDVPAVEKADLAAGC 553
            LLL+QA  A+AC C   Y TPC+Y QG  +   TTVV R   LSKS Q DIN+D+T+T  V  VYSG     DEI+F+TGGNSA CGVDL IGEEY+LGLYPA  DPFDST     G LTVG CDLAR+WSDVP  EKADL AGC
Sbjct:   18 LLLNQAFHASACTCLAQYITPCEYAQG--IFTTTTVVFRGTALSKSAQTDINEDVTFTVQVNAVYSGDVDGQDEISFVTGGNSAICGVDLTIGEEYLLGLYPAGDDPFDSTGGGTAGQLTVGLCDLARVWSDVPDDEKADLEAGC 160
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BLAST of mRNA_H-canaliculatus_F_contig1318.2614.1 vs. uniprot
Match: W2TPY4_NECAM (Tissue inhibitor of metalloproteinase n=1 Tax=Necator americanus TaxID=51031 RepID=W2TPY4_NECAM)

HSP 1 Score: 55.1 bits (131), Expect = 2.600e-5
Identity = 39/102 (38.24%), Postives = 52/102 (50.98%), Query Frame = 2 
Query:  254 VLSKSDQVDIND---DITYTADVTTVY-SGSNADEIT--FITGGNSAACGVDLRIGEEYILGLYPAVADPFDSTDVTGLLTVGACDLARLWSDVPAVEKADL 541
            V+SK D     D   DITY      VY   S   +++   +T  NSAACG++L +G EY+LG          S D  G++    C +   WSDVP+ EKADL
Sbjct:   40 VISKKDPNTSPDGLQDITYVVQHICVYRKPSKIKKLSNQIVTASNSAACGIELDVGVEYLLG---------GSVDEKGVVRSFLCGIVEKWSDVPSKEKADL 132
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BLAST of mRNA_H-canaliculatus_F_contig1318.2614.1 vs. uniprot
Match: A0A368GTZ3_ANCCA (Tissue inhibitor of metalloproteinase n=2 Tax=Ancylostoma TaxID=29169 RepID=A0A368GTZ3_ANCCA)

HSP 1 Score: 53.5 bits (127), Expect = 8.920e-5
Identity = 39/102 (38.24%), Postives = 51/102 (50.00%), Query Frame = 2 
Query:  254 VLSKSDQVDIND---DITYTADVTTVY-SGSNADEIT--FITGGNSAACGVDLRIGEEYILGLYPAVADPFDSTDVTGLLTVGACDLARLWSDVPAVEKADL 541
            V+SK D     D   D+TYT     VY   S   +++   +T  NSAACGV+L IG EY++G          S D   +L    C +   W+DVPA EKA L
Sbjct:   40 VISKKDPNTSPDGIQDVTYTVQHICVYRKPSKIKQLSSNIVTASNSAACGVELEIGAEYLIG---------GSVDEKNVLHSYLCGIVEKWNDVPAKEKAAL 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1318.2614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCN7_ECTSI1.350e-4163.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W2TPY4_NECAM2.600e-538.24Tissue inhibitor of metalloproteinase n=1 Tax=Neca... [more]
A0A368GTZ3_ANCCA8.920e-538.24Tissue inhibitor of metalloproteinase n=2 Tax=Ancy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1318contigH-canaliculatus_F_contig1318:4585..9474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.0
Seed ortholog evalue1.4e-38
Seed eggNOG ortholog2880.D8LCN7
EggNOG OGs2D2W6@1,2SP8K@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons3
Model size2489
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1318.2614.1prot_H-canaliculatus_F_contig1318.2614.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1318 4673..6768 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929055.2417877-UTR-H-canaliculatus_F_contig1318:4584..46721622929055.2417877-UTR-H-canaliculatus_F_contig1318:4584..4672Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1318 4585..4672 +
1696845662.503719-UTR-H-canaliculatus_F_contig1318:4584..46721696845662.503719-UTR-H-canaliculatus_F_contig1318:4584..4672Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1318 4585..4672 +
1622929055.3250995-UTR-H-canaliculatus_F_contig1318:6768..68041622929055.3250995-UTR-H-canaliculatus_F_contig1318:6768..6804Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1318 6769..6804 +
1696845662.5308928-UTR-H-canaliculatus_F_contig1318:6768..68041696845662.5308928-UTR-H-canaliculatus_F_contig1318:6768..6804Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1318 6769..6804 +
1622929055.344573-UTR-H-canaliculatus_F_contig1318:7577..94741622929055.344573-UTR-H-canaliculatus_F_contig1318:7577..9474Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1318 7578..9474 +
1696845662.5405347-UTR-H-canaliculatus_F_contig1318:7577..94741696845662.5405347-UTR-H-canaliculatus_F_contig1318:7577..9474Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1318 7578..9474 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929055.2683592-CDS-H-canaliculatus_F_contig1318:4672..48481622929055.2683592-CDS-H-canaliculatus_F_contig1318:4672..4848Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1318 4673..4848 +
1696845662.514085-CDS-H-canaliculatus_F_contig1318:4672..48481696845662.514085-CDS-H-canaliculatus_F_contig1318:4672..4848Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1318 4673..4848 +
1622929055.28762-CDS-H-canaliculatus_F_contig1318:6476..67681622929055.28762-CDS-H-canaliculatus_F_contig1318:6476..6768Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1318 6477..6768 +
1696845662.522579-CDS-H-canaliculatus_F_contig1318:6476..67681696845662.522579-CDS-H-canaliculatus_F_contig1318:6476..6768Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1318 6477..6768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1318.2614.1

>prot_H-canaliculatus_F_contig1318.2614.1 ID=prot_H-canaliculatus_F_contig1318.2614.1|Name=mRNA_H-canaliculatus_F_contig1318.2614.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=156bp
MGISKIIAAFALASALLLDQASKAAACVCPTVYFTPCQYVQGAAVPAPTT
VVRAVVLSKSDQVDINDDITYTADVTTVYSGSNADEITFITGGNSAACGV
DLRIGEEYILGLYPAVADPFDSTDVTGLLTVGACDLARLWSDVPAVEKAD
LAAGC*
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mRNA from alignment at H-canaliculatus_F_contig1318:4585..9474+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1318.2614.1 ID=mRNA_H-canaliculatus_F_contig1318.2614.1|Name=mRNA_H-canaliculatus_F_contig1318.2614.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4890bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1318:4585..9474+ (Hapterophycus canaliculatus Oshoro5f female)
ACCCTCCCCACTCTCCGCACTACCGTCCCACTCCGAGTTCGTACCCCAAA
CGAAAAACTAAACACCCTTCCGCCACGAAAAGAGTGTCATGGGAATCTCG
AAGATCATCGCTGCTTTCGCCCTCGCGTCGGCCCTTTTGCTGGATCAAGC
ATCCAAAGCGGCCGCTTGTGTGTGCCCGACCGTGTACTTCACCCCGTGCC
AGTATGTTCAAGGAGCAGCGGTGCCTGCACCAACGACAGTCGTGCGCGCT
GTGGTGCTGTCAAAGTAAGTCGTCGACGCCATAATTTCACGTTCACTTTT
ATGTCTGGCAGAACCCCAAAATCGAAGTAATTTGGTACGCAGGTCGTACG
TAGTTGGGTCTTTTTCCCGCCGCGGGTAAAAAACAGTAGCGCGGAAGTGA
TCTCCTGCACGGAGAGACAACATATAAGAGACTCGCGCGCGCCATGTTGG
CGAGGATGAAGTGTTGTTTTAGAAGCGAATATTACGTCGTCTCCGTCTGT
CTTTGTCTAGCATCCAAGCAGCGCAAGAATGCCCTAGGCGGAGTTTGGTG
GAAGGTTTCATCCACGGAAGTGCTTCGGTATAGACAGTACGCCATCAAAA
ATGAAGTCAACCGTTCGAATTCGTACCTACCGAGAGTGCGTCGGGTCCGT
AACGTCCACAAATCAAGGCCGGGGTAATTCGAGGACACTCTTCCATAACT
CTGAGGATGGCGTTCACAGCCTCTTCTGCACAACAAGTTATATCCTGTAG
TGCCCGAAATTGCTCCATCCGGTGTGTGTAGTCGCCACGGTTCCCCCCCC
GCGGTGTTTTCACCCCCGGCATACATCCCCTCCGCCGATATCCCTACCTA
GCAAGTTTATCTACAAATTGTATTTATTAATAATTGCTGGAACGAGAAGC
CCCGGTCTTACCACATTAGCCTCGGAAATTCATAATCGGCCGGGAAAAAT
GGCCAAAAAGCGGGTTGAATACGGACCTGGCAGCTCATCATCACGAACAC
TGTACTCGCGCCATACCAAGTGGATCGTCACCACACCTACCTTGTTGTGT
TATCTGCATGTATGGCTAGGCTGACCCAAAACGTAAACCGCCGTCGTTGG
CAAACGCCTCTTCACGTGCAGCACGATGAATTCGAGGGTGCAAAAGGAAA
CCACGAGAAGAATGGTTTTCAACACGCATCAACGACGACGCGAGAGCCCC
GCACGGATAGTTCTTTGTTTTCACCCCCCGTGGATCGTTTATCTTCAACA
CAAAAAAGTAACTCAATGGACGAGTTCGAAGAGAAGAAGCACACGGCTTC
GAAGACTTCGCAGCGATGGTCTCGATAGGGCGCGAGAACGTTTTTTGGTG
TTGAGTTCGAGTTTGAGACCTGCATGTCCACCCTTTTTTCGGACTTGATT
GCTGTTTTCATCCAGACCAAACTACTACCAGGATGTGTCAGTTCGCAGTT
AAGTCTCCATAGCTTCCGCTGCTCCACCCTTTTTTGAACAAGATCTTTTT
TGCTTTCCGCATCATTTTTTCACTTGCTCTCTCGGTTCACGATCCCAAAG
AAGGTGGTAGTGAAAAGGTGTACAAGTGAAGAAGGATTTTCGGGTTGCCA
TATGGAATCTCACTTACATTGTCTGCAAAGGGGACGACCGGACATGAAGC
AGTTTCGCACGGCAGTTGACTTTGAGAACGCGTCGGTAAAATGCCCGTCG
GTAACTTCACTATCATGATTGTAATAAAACAATAAGCATTATTTCACCAT
ATATGCATTCACATCTTCATCATCACGAGCTGCTCGCCATGGAGACCACC
TTTCTTTGGCTGCTGCCACTAATCTGCACTTACTTGGCTGTGTCTCCCTT
GCATCACTCTGTCCCTCTTGGTTCTCCAAAAACTACCCATAGGTCTGATC
AGGTGGACATCAACGACGACATAACCTACACCGCAGACGTCACCACCGTG
TACAGCGGAAGTAACGCCGACGAAATCACCTTCATCACCGGAGGCAACAG
CGCCGCCTGCGGGGTCGACCTGAGAATTGGAGAGGAGTACATCCTCGGTC
TCTACCCGGCCGTCGCTGACCCCTTCGACTCGACCGACGTGACTGGCCTT
CTTACAGTAGGCGCGTGCGACCTGGCGAGGCTCTGGAGCGACGTCCCAGC
CGTTGAGAAGGCCGACCTGGCAGCTGGTTGCTGAGCGAGTGTCTGTAATC
TTCGTCGCGATGACAAGGAGGTTCGTGCTGAATGGAGCGCGAAAAACGTG
CCATGTGTTCGAAGCTGCTCCAACTTTGATCTAGGGAAGTCTTTGCCCTT
AATTGCTCCGAGTTGGATGTTTGGTTGTGAGTCATTACACTAAGAGGGGG
TCGCTCTTTGGAGCGACGCTTTCAGTGTGGGGGGCATGATGTGTCGCATC
CTGACGGACTGTATGTAGGTGTAACGCTGCGACTGAGACCCTCAAATAGT
GTTTAGTCCATGTACAGGACGTCTGCTGCGCGAGGGGCTCGGTCTTCTTG
CCGCGGCTTCACGGTTCTATATATATATGAATGCTGGCTAGCTGAAAATA
AGGATACCGGCACCCTTACTTCTGCAGTTCAATACCGTACATACTTCTCT
TGACGATGATGGTAGCAAGGTTTGTTACAACGCACGCGAAAGCCTTGGTT
TCGGTTTTTCCTCCATCCATGACATGAAGCCCTTCCTTTGGAACGATTCA
ATAGGTACAGTAGGTGCACCTGGTGTGGTTAAAATTTTATCATCCGGCTT
GGCGCTGCTAAGAGACTTTCGCGGTTGTGTCGCGTTGTTCACCTTGCACC
CCAGTTTCGCGACATCGTGAACACGGAGTCATTCGCAGGCACCTGCATTG
ATGCAACAGCCTTCTCGTATTCGTACCTGTTGGTGGTGTAAAAGAACAGT
AGATTGGGATATGATCGCCGACCTCCCCCCCCGCCCCCCGGCATTTCATC
TAACCTGTATTATCTCATTCTTCGAACAAACACGTCCCTTCAGGAACGCT
CCCAATAATCCAACAACGGGAAGTACTACTACTGCTCCTTACACTTTCAA
CCATCCGGAGTCGCAAGAGGACGAGAAGGAGTGCAAGATTCGGCCCTGTG
GCGCTGGGACAGCGGTTTGGCAGCTGTTCCGAAAAGCAACAGCGCCGCTA
GCGCCATCGCTTTGTCCACTCCCATCACTGGTTGTCTTGTAAGAATTGAC
TGCGTGTGCTCCAGGTTGTGCAATTCAGCGTACTACGAACGCGTTTGCAA
GTCTACTCATCTGTACTATACATTGTTGTTTCCGTTTGTTTGATACCCCG
AGTCAGAGCATCTAAACGTAGTCTGGACTGCCTTCTCCGCGTGCCGGCGA
TTAGAATGTACGACATCGCTTGGGAGCGGCGACCGCCTCACCATTCCTCA
TCGAATTGGAGTTTTTGGCTTGATATTATTTGAGGCAAGGAAAGGTTTCC
GATTCCTCCTGCCCATGGAAGTGCTCATAGCTCGTGCCGAGTCGCTGTTG
CAACGCATAGAGTCCTGCTGTGTGGAGAGAATAGGCACCGAGTAGACGCT
ATCGTTTGGCGGAGGATATAGGTGGTGTGGGGACTAGCGTCGTGTCCCTT
GAGACTTGTATCAATCCGATGAAGGTGGACTGTTGTTAGTCTGGAAGATG
GGCAGGCATTTGAAGCTCCTCGAAGCTCCGATCATGGTCTACAATTGATC
TTTTCGCCCCCAATTCTTTGGACGGCTGCGTTTGTTGAATTGGGATCTAT
GTTTCGTTGGAATTCGATGGTACGCAATCCAGCGTTGGCAAGCGCTTCAC
AATTCGTGACGCAACAGGGGATAAGGCAGGTGTCTTCAGTATCGCCTTTA
TAGCAGCCCGACACAACGAAGCGCTGCCGTATACATTACGGTTGTTTTTG
ATGGTAAACGGCATTCGATTATACTACAGTAGGCGGTTACGACTTCGTTG
GTAGTATAGGTAGTGGTTTGTATTCGATGGCAATTTGTTTTCGATGTTCA
CAAAACCTGTCGGCTGTGTTTCGGTGGTTTGACGTTTTCGTATACGGTGA
AGAGGCATTTGAAGATTGTAGCGGAGATGGTATTCGTAAAGTTCACGGTA
CATGTTAGTAAGCAGACAATATTCGTCGCAATATACATGACAAGCATCCA
TCATACCAACGGGCAAGAATCACAGCAAGTGGTGATGAAGCAATGGTACC
GTGTTCAATTTTCGCTAGTTCATTCCGGGGTTTTGACGCAAGCAGGTGAA
CGGGTGCGCCATGATCATTCGTTGACGACCATACGACATGTCTCGCACCG
AACTCGTGGTCAGCCTCGGATTCAGGGGTGCCGAGGTGTCACCTTGGCGC
CCAAATCGTCGACAAGATGAATATTTGAGGGGAGCTTTTCGTTCTTTGTG
CGCAGAAGTTCGGTAAGCTAGAACGTTTTTGTCTCAAACGCTACGCACAT
CGCGCTTTTTGGGCGGTCACCCCATATGACGGTACTTTTCTCGCGGTTAT
GACATAACGCGATACTTTTGGATGGTGGAGGTGTACGGTCAATCGTTTCT
TCGCGTTGTGCTTCGATGACGAACGGCGTTCGGGTTGTAGACAGTGGCGG
TTTTAGCGGACACGATACAACTGTGCCACGAAAAGTCAGTGGAGTCATTG
GCGGTCGAGTTAGCATAGAACCATCCCTCAGCAAGGTAGACCGACCACGG
GAAAGGGCAGGGTAGATGAATATAGGTGTGCCGACATGCCGGCATCACCG
TCATCAGCTTGCTTATGTGGGGTAGTGTAACAGAATAAAGTACGATAATG
CAAGACGAGGTGTGTGGTGGAGAGCGTTGATCCATGGGAAACAATCAAAA
ACGCATAATATATTTGCATTCATGACCACGCGAACCAAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1318:4585..9474+

>mRNA_H-canaliculatus_F_contig1318.2614.1 ID=mRNA_H-canaliculatus_F_contig1318.2614.1|Name=mRNA_H-canaliculatus_F_contig1318.2614.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=936bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1318:4585..9474+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAATCTCGAAGATCATCGCTGCTTTCGCCCTCGCGTCGGCCCTTTT
GCTGGATCAAGCATCCAAAGCGGCCGCTTGTGTGTGCCCGACCGTGTACT
TCACCCCGTGCCAGTATGTTCAAGGAGCAGCGGTGCCTGCACCAACGACA
GTCGTGCGCGCTGTGGTGCTGTCAAAATGGGAATCTCGAAGATCATCGCT
GCTTTCGCCCTCGCGTCGGCCCTTTTGCTGGATCAAGCATCCAAAGCGGC
CGCTTGTGTGTGCCCGACCGTGTACTTCACCCCGTGCCAGTATGTTCAAG
GAGCAGCGGTGCCTGCACCAACGACAGTCGTGCGCGCTGTGGTGCTGTCA
AAGTCTGATCAGGTGGACATCAACGACGACATAACCTACACCGCAGACGT
CACCACCGTGTACAGCGGAAGTAACGCCGACGAAATCACCTTCATCACCG
GAGGCAACAGCGCCGCCTGCGGGGTCGACCTGAGAATTGGAGAGGAGTAC
ATCCTCGGTCTCTACCCGGCCGTCGCTGACCCCTTCGACTCGACCGACGT
GACTGGCCTTCTTACAGTAGGCGCGTGCGACCTGGCGAGGCTCTGGAGCG
ACGTCCCAGCCGTTGAGAAGGCCGACCTGGCAGCTGGTTGCTGAGTCTGA
TCAGGTGGACATCAACGACGACATAACCTACACCGCAGACGTCACCACCG
TGTACAGCGGAAGTAACGCCGACGAAATCACCTTCATCACCGGAGGCAAC
AGCGCCGCCTGCGGGGTCGACCTGAGAATTGGAGAGGAGTACATCCTCGG
TCTCTACCCGGCCGTCGCTGACCCCTTCGACTCGACCGACGTGACTGGCC
TTCTTACAGTAGGCGCGTGCGACCTGGCGAGGCTCTGGAGCGACGTCCCA
GCCGTTGAGAAGGCCGACCTGGCAGCTGGTTGCTGA
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