prot_H-canaliculatus_F_contig12790.2319.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig12790.2319.1
Unique Nameprot_H-canaliculatus_F_contig12790.2319.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length89
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12790.2319.1 vs. uniprot
Match: A0A6H5KQW8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQW8_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 2.740e-41
Identity = 69/88 (78.41%), Postives = 74/88 (84.09%), Query Frame = 0 
Query:    1 MYARISLPALCALLQGQSITEVYKVYFRAGGADGRAHAVVTGPGGFHLCACLHLLRTGRFCRHFLAVLADFSMTTDWQFDPRSLHPRW 88
            MYAR SLPA CALL GQ ITEVYK+ FR+GGADGRAH VVTGPGGF+LC+CLHLL TGRFCRHFLAVLADF     W+FDP  LHPRW
Sbjct:  369 MYARTSLPAFCALLHGQDITEVYKISFRSGGADGRAHLVVTGPGGFYLCSCLHLLHTGRFCRHFLAVLADFFAKGGWEFDPACLHPRW 456
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BLAST of mRNA_H-canaliculatus_F_contig12790.2319.1 vs. uniprot
Match: A0A6H5K983_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K983_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.500e-35
Identity = 64/84 (76.19%), Postives = 69/84 (82.14%), Query Frame = 0 
Query:    1 MYARISLPALCALLQGQSITEVYKVYFRAGGADGRAHAVVTGPGGFHLCACLHLLRTGRFCRHFLAVLADFSMTTDWQFDPRSL 84
            MYAR SLPA CALL GQ I +VYKV FR+GGADGRAH VVTGPGGF+ C+CLHLLRTGRFCRHFLAVLADF     W+FDP  L
Sbjct:  345 MYARTSLPAFCALLHGQDIMKVYKVSFRSGGADGRAHLVVTGPGGFYPCSCLHLLRTGRFCRHFLAVLADFFAKGGWEFDPACL 428
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12790.2319.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQW8_9PHAE2.740e-4178.41SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K983_9PHAE1.500e-3576.19SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..35
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 36..55
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 56..89
IPR007527Zinc finger, SWIM-typePROSITEPS50966ZF_SWIMcoord: 23..72
score: 8.246

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12790contigH-canaliculatus_F_contig12790:123..389 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12790.2319.1mRNA_H-canaliculatus_F_contig12790.2319.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig12790 123..389 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig12790.2319.1 ID=prot_H-canaliculatus_F_contig12790.2319.1|Name=mRNA_H-canaliculatus_F_contig12790.2319.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=89bp
MYARISLPALCALLQGQSITEVYKVYFRAGGADGRAHAVVTGPGGFHLCA
CLHLLRTGRFCRHFLAVLADFSMTTDWQFDPRSLHPRWH
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007527Znf_SWIM