mRNA_H-canaliculatus_F_contig12790.2319.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12790.2319.1
Unique NamemRNA_H-canaliculatus_F_contig12790.2319.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12790.2319.1 vs. uniprot
Match: A0A6H5KQW8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQW8_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 2.740e-41
Identity = 69/88 (78.41%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:    1 MYARISLPALCALLQGQSITEVYKVYFRAGGADGRAHAVVTGPGGFHLCACLHLLRTGRFCRHFLAVLADFSMTTDWQFDPRSLHPRW 264
            MYAR SLPA CALL GQ ITEVYK+ FR+GGADGRAH VVTGPGGF+LC+CLHLL TGRFCRHFLAVLADF     W+FDP  LHPRW
Sbjct:  369 MYARTSLPAFCALLHGQDITEVYKISFRSGGADGRAHLVVTGPGGFYLCSCLHLLHTGRFCRHFLAVLADFFAKGGWEFDPACLHPRW 456
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BLAST of mRNA_H-canaliculatus_F_contig12790.2319.1 vs. uniprot
Match: A0A6H5K983_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K983_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.500e-35
Identity = 64/84 (76.19%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:    1 MYARISLPALCALLQGQSITEVYKVYFRAGGADGRAHAVVTGPGGFHLCACLHLLRTGRFCRHFLAVLADFSMTTDWQFDPRSL 252
            MYAR SLPA CALL GQ I +VYKV FR+GGADGRAH VVTGPGGF+ C+CLHLLRTGRFCRHFLAVLADF     W+FDP  L
Sbjct:  345 MYARTSLPAFCALLHGQDIMKVYKVSFRSGGADGRAHLVVTGPGGFYPCSCLHLLRTGRFCRHFLAVLADFFAKGGWEFDPACL 428
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12790.2319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQW8_9PHAE2.740e-4178.41SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K983_9PHAE1.500e-3576.19SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12790contigH-canaliculatus_F_contig12790:123..389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog2880.D7FLF6
EggNOG OGs2CMGX@1,2QQB8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size267
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929000.4838085-CDS-H-canaliculatus_F_contig12790:122..3891622929000.4838085-CDS-H-canaliculatus_F_contig12790:122..389Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12790 123..389 +
1696845645.0221672-CDS-H-canaliculatus_F_contig12790:122..3891696845645.0221672-CDS-H-canaliculatus_F_contig12790:122..389Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12790 123..389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12790.2319.1prot_H-canaliculatus_F_contig12790.2319.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12790 123..389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12790.2319.1

>prot_H-canaliculatus_F_contig12790.2319.1 ID=prot_H-canaliculatus_F_contig12790.2319.1|Name=mRNA_H-canaliculatus_F_contig12790.2319.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=89bp
MYARISLPALCALLQGQSITEVYKVYFRAGGADGRAHAVVTGPGGFHLCA
CLHLLRTGRFCRHFLAVLADFSMTTDWQFDPRSLHPRWH
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mRNA from alignment at H-canaliculatus_F_contig12790:123..389+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12790.2319.1 ID=mRNA_H-canaliculatus_F_contig12790.2319.1|Name=mRNA_H-canaliculatus_F_contig12790.2319.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=267bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12790:123..389+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTATGCTCGTATATCTCTCCCCGCCCTCTGTGCTCTGCTGCAAGGGCA
GAGCATCACGGAAGTGTACAAGGTATATTTTCGTGCGGGCGGTGCGGATG
GGCGAGCCCATGCCGTCGTGACCGGGCCGGGCGGCTTCCACCTCTGTGCT
TGTCTTCACCTCCTCCGCACCGGTCGCTTCTGCCGACATTTCCTGGCTGT
CCTAGCGGACTTCTCCATGACGACCGACTGGCAGTTCGACCCGAGGAGTC
TTCATCCCCGGTGGCAT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12790:123..389+

>mRNA_H-canaliculatus_F_contig12790.2319.1 ID=mRNA_H-canaliculatus_F_contig12790.2319.1|Name=mRNA_H-canaliculatus_F_contig12790.2319.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=534bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12790:123..389+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTATGCTCGTATATCTCTCCCCGCCCTCTGTGCTCTGCTGCAAGGGCA
GAGCATCACGGAAGTGTACAAGGTATATTTTCGTGCGGGCGGTGCGGATG
GGCGAGCCCATGCCGTCGTGACCGGGCCGGGCGGCTTCCACCTCTGTGCT
TGTCTTCACCTCCTCCGCACCGGTCGCTTCTGCCGACATTTCCTGGCTGT
CCTAGCGGACTTCTCCATGACGACCGACTGGCAGTTCGACCCGAGGAGTC
TTCATCCCCGGTGGCATATGTATGCTCGTATATCTCTCCCCGCCCTCTGT
GCTCTGCTGCAAGGGCAGAGCATCACGGAAGTGTACAAGGTATATTTTCG
TGCGGGCGGTGCGGATGGGCGAGCCCATGCCGTCGTGACCGGGCCGGGCG
GCTTCCACCTCTGTGCTTGTCTTCACCTCCTCCGCACCGGTCGCTTCTGC
CGACATTTCCTGGCTGTCCTAGCGGACTTCTCCATGACGACCGACTGGCA
GTTCGACCCGAGGAGTCTTCATCCCCGGTGGCAT
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