mRNA_H-canaliculatus_F_contig12615.2194.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12615.2194.1
Unique NamemRNA_H-canaliculatus_F_contig12615.2194.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12615.2194.1 vs. uniprot
Match: A0A6H5JWM1_9PHAE (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM1_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 3.930e-59
Identity = 102/117 (87.18%), Postives = 111/117 (94.87%), Query Frame = 1 
Query:   43 GWDDPAGVAQGRWAWGTEPAGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLAATLCLVVLPFLLGRVVFSLVHLPRQWTHDTASFAVGLTILKAVTPSIYRGWCAARLAILARRR 393
            GWDDPAGVAQGRWAWG EP GEVQLNLAPRRRHGARAVPLVAVLLLAAWATVL A LCLVVLPFLLGR++FSL+HLPR+WTHDTASFAVGLT+LKAVTP+++R WCAARL +LARRR
Sbjct: 1156 GWDDPAGVAQGRWAWGAEPPGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLFSLIHLPRRWTHDTASFAVGLTLLKAVTPTLHRAWCAARLKLLARRR 1272
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BLAST of mRNA_H-canaliculatus_F_contig12615.2194.1 vs. uniprot
Match: D8LBR1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR1_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 1.690e-48
Identity = 88/104 (84.62%), Postives = 94/104 (90.38%), Query Frame = 1 
Query:   43 GWDDPAGVAQGRWAWGTEPAGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLAATLCLVVLPFLLGRVVFSLVHLPRQWTHDTASFAVGLTILKAVTPSIYRG 354
            GWDDPAGVAQGRWAWG EP GEVQLNLAPRRRHGARAVPLVAVLLLAAWATVL A LCLVVLPFLLGR++FSL+HLPR+WTHDTASFAVGLT+LKA    +  G
Sbjct: 1072 GWDDPAGVAQGRWAWGAEPPGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLFSLIHLPRRWTHDTASFAVGLTLLKAALLQVEAG 1175
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BLAST of mRNA_H-canaliculatus_F_contig12615.2194.1 vs. uniprot
Match: A0A7S2RW40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RW40_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 5.290e-19
Identity = 59/121 (48.76%), Postives = 73/121 (60.33%), Query Frame = 1 
Query:   10 IVGPPLRRPPPGWDDPAGVAQGRWAWGTEPAGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLAATLCLVVL----PFLLGRVVFSLVHLPRQWTHDTASFAVGLTILKAVTP---SIYR 351
            +VG PL+RPPPGWDD AG  QGRWAWG E   EV+ NLA RR      + L  VLL   WATVL    CLV+L    P +LGR VF L+ +P    HD  +FA+G+ +  A  P   ++YR
Sbjct:  840 LVGAPLQRPPPGWDDLAGGGQGRWAWGNEEPTEVERNLAKRRTPDRLTLRL-GVLLGLGWATVL----CLVLLGTWAPLVLGRRVFQLLRIPTSVIHDPFAFALGIGLCLAARPLVAAVYR 955
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12615.2194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JWM1_9PHAE3.930e-5987.18RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
D8LBR1_ECTSI1.690e-4884.62RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
A0A7S2RW40_9STRA5.290e-1948.76Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12615contigH-canaliculatus_F_contig12615:614..2290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.2
Seed ortholog evalue5.3e-42
Seed eggNOG ortholog2880.D8LBR1
KEGG koko:K10661
KEGG Pathwayko04141,map04141
GOsGO:0000176,GO:0000177,GO:0000178,GO:0000209,GO:0000291,GO:0000956,GO:0001101,GO:0002020,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004536,GO:0004540,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0006139,GO:0006259,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006720,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009414,GO:0009415,GO:0009628,GO:0009698,GO:0009699,GO:0009892,GO:0009893,GO:0009987,GO:0010025,GO:0010033,GO:0010035,GO:0010143,GO:0010166,GO:0010243,GO:0010345,GO:0010467,GO:0010468,GO:0010498,GO:0010605,GO:0010629,GO:0012505,GO:0016020,GO:0016021,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016180,GO:0016567,GO:0016740,GO:0016787,GO:0016788,GO:0019222,GO:0019438,GO:0019439,GO:0019538,GO:0019748,GO:0019787,GO:0019899,GO:0019941,GO:0022613,GO:0030163,GO:0030176,GO:0030433,GO:0031123,GO:0031125,GO:0031126,GO:0031224,GO:0031227,GO:0031624,GO:0031974,GO:0031981,GO:0031984,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0034976,GO:0036211,GO:0036503,GO:0042175,GO:0042221,GO:0042254,GO:0042335,GO:0042802,GO:0043085,GO:0043144,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043628,GO:0043632,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044390,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048856,GO:0050789,GO:0050790,GO:0050896,GO:0051341,GO:0051353,GO:0051603,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070936,GO:0071025,GO:0071027,GO:0071028,GO:0071051,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0098827,GO:0140096,GO:0140097,GO:0140098,GO:1900490,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901568,GO:1901570,GO:1901575,GO:1901576,GO:1901698,GO:1901700,GO:1902494,GO:1905354,GO:1990381,GO:2001215
EggNOG free text desc.chlorophyll binding
EggNOG OGsCOG5183@1,KOG1609@2759
EC2.3.2.27
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categorysignal anchor
Exons3
Model size410
Cds size408
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12615.2194.1prot_H-canaliculatus_F_contig12615.2194.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12615 614..2290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928981.8267434-CDS-H-canaliculatus_F_contig12615:613..7441622928981.8267434-CDS-H-canaliculatus_F_contig12615:613..744Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12615 614..744 +
1696845637.6840985-CDS-H-canaliculatus_F_contig12615:613..7441696845637.6840985-CDS-H-canaliculatus_F_contig12615:613..744Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12615 614..744 +
1622928981.8416157-CDS-H-canaliculatus_F_contig12615:1610..18061622928981.8416157-CDS-H-canaliculatus_F_contig12615:1610..1806Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12615 1611..1806 +
1696845637.6960042-CDS-H-canaliculatus_F_contig12615:1610..18061696845637.6960042-CDS-H-canaliculatus_F_contig12615:1610..1806Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12615 1611..1806 +
1622928981.8629694-CDS-H-canaliculatus_F_contig12615:2209..22901622928981.8629694-CDS-H-canaliculatus_F_contig12615:2209..2290Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12615 2210..2290 +
1696845637.7070765-CDS-H-canaliculatus_F_contig12615:2209..22901696845637.7070765-CDS-H-canaliculatus_F_contig12615:2209..2290Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12615 2210..2290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12615.2194.1

>prot_H-canaliculatus_F_contig12615.2194.1 ID=prot_H-canaliculatus_F_contig12615.2194.1|Name=mRNA_H-canaliculatus_F_contig12615.2194.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=136bp
EGIIVGPPLRRPPPGWDDPAGVAQGRWAWGTEPAGEVQLNLAPRRRHGAR
AVPLVAVLLLAAWATVLAATLCLVVLPFLLGRVVFSLVHLPRQWTHDTAS
FAVGLTILKAVTPSIYRGWCAARLAILARRRTRDTA
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mRNA from alignment at H-canaliculatus_F_contig12615:614..2290+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12615.2194.1 ID=mRNA_H-canaliculatus_F_contig12615.2194.1|Name=mRNA_H-canaliculatus_F_contig12615.2194.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1677bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12615:614..2290+ (Hapterophycus canaliculatus Oshoro5f female)
GAGGGTATCATCGTTGGGCCGCCCTTGCGGCGCCCCCCCCCCGGCTGGGA
TGACCCGGCGGGCGTCGCCCAGGGGAGGTGGGCGTGGGGCACGGAGCCCG
CTGGAGAGGTGCAGCTCAACCTCGCCCCGAGGTGATAAATCCCGTGCTTG
GAGATGAAGAAAGAGGGGGCGTCATGCGCTCGTTCATTGGCACCTCAAGG
GGGGGGGGTCCGGTTTGGTTTTGGGGTTCACTGCTTGTTGCTCTCTCGCA
AGTCTCGGTTCGGTTCGGAAAGGTCGCTTTTAAAAAGAAAACATAACAAC
ACCGTTAGAACACCTCCTGAGGTACGTCGTGTGAGGCGTACCCCGAGGCT
TCTGTTGAGTTCAAAACAGCGAGGGTTCATTGATGGGGACAGAAGCATGA
ACAAGACAGAGTTTGTTTTTCTTTTTCTCTTTTCTGTTTGTGGCCGTCGG
GTTGTTTCGTCAGCCATTTTGGTAACGGTATCCTTCGCGTCCACTGGTTG
GGGTCCGCTCACGGCAGCCGATTGTAGCAGCAGCATTTTGTTGGCAAACA
CTCGTGGTTCACGTCTTGAGATTTATGTCTCGTCCCGAGTCTCGAAAATT
AGGGCTTTTTGCTGCCCGGGCGGGTTGGATAGGCGGCGTCTTGTCGACGC
AGGAAGTCGGGAGATCGATCATCCGTTCGACTGTTGGAACTTTTCATTTT
TGCAGGGTGGGGTTCAGGGACAAAGGGACAAGAGGGAGGCTCGGTCGGGT
GTCGTGGCTGATGCCTCAGCCGCCTCTGCTCGCGCTCCTTCAGCGTACAC
ACGTCGCACGTCGCACAAAGTTTTTGGTGTGCGGCGCTTCGCCTGTGCCC
CGACCTTCACTTTCTGTTGACAGGCTAACTCGCATACGCCGCATACAATC
GTTTGTGCTCCGTGTTTCTCTCTTTTACCTTTCTCTCTCTCTCTCTCTCT
CCCTCTTCTTTCTCTCTCTCTCTCTTTCTCTCTCGCCGTCAACTCAGGAG
GCGGCACGGCGCACGCGCGGTGCCCCTGGTGGCGGTGCTGCTCCTGGCGG
CGTGGGCGACCGTCCTCGCCGCGACGCTGTGCCTCGTGGTCCTCCCGTTC
CTGCTGGGCCGGGTCGTGTTCTCGCTTGTGCACCTGCCGCGGCAATGGAC
CCACGACACGGCCAGCTTCGCCGTCGGCCTCACGATCCTAAAGGCACGAT
GCTGATACTGAAAGTAGCTACCCTCGCGCTGCTCGGTGGACGCTGCGGTG
GTTTGTGCGTGTGCGTGTGCGTGTGCGTGTGCGTGTGCGTGTGCGTGTGC
GTGTTCGTGGGCGTGGGCGTGGGCGTGGGCGTGCGTGTGTGTGTGTGTGT
GATGCTTCTCGGTTTTTACCTGTGTCCAAAAAAGCGTCTGACCGGCCGCG
GCGGCGGCGGCGGCGGGGGCTTTTAGTAGTCTCCATCATACGGTTCTTCG
CCCTCCTCCCTCCTCCCTGCTCTCCGCGTTCTCCCCTAGAAAAATCTCGC
GCGTCGGAGAACAACGCGATGACGGATTGGCCCCCCGTTCCTCTTCCTCC
TCCCCTTCGCCGACCCGCCTCCCCGTCCCTTCCAACCCAAAATCAGGCCG
TTACCCCGTCGATCTACCGCGGGTGGTGCGCGGCGCGCCTCGCGATCCTT
GCCCGGCGGCGAACCCGGGACACGGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12615:614..2290+

>mRNA_H-canaliculatus_F_contig12615.2194.1 ID=mRNA_H-canaliculatus_F_contig12615.2194.1|Name=mRNA_H-canaliculatus_F_contig12615.2194.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=816bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12615:614..2290+ (Hapterophycus canaliculatus Oshoro5f female)
GAGGGTATCATCGTTGGGCCGCCCTTGCGGCGCCCCCCCCCCGGCTGGGA
TGACCCGGCGGGCGTCGCCCAGGGGAGGTGGGCGTGGGGCACGGAGCCCG
CTGGAGAGGTGCAGCTCAACCTCGCCCCGAGGAGGGTATCATCGTTGGGC
CGCCCTTGCGGCGCCCCCCCCCCGGCTGGGATGACCCGGCGGGCGTCGCC
CAGGGGAGGTGGGCGTGGGGCACGGAGCCCGCTGGAGAGGTGCAGCTCAA
CCTCGCCCCGAGGAGGCGGCACGGCGCACGCGCGGTGCCCCTGGTGGCGG
TGCTGCTCCTGGCGGCGTGGGCGACCGTCCTCGCCGCGACGCTGTGCCTC
GTGGTCCTCCCGTTCCTGCTGGGCCGGGTCGTGTTCTCGCTTGTGCACCT
GCCGCGGCAATGGACCCACGACACGGCCAGCTTCGCCGTCGGCCTCACGA
TCCTAAAGGAGGCGGCACGGCGCACGCGCGGTGCCCCTGGTGGCGGTGCT
GCTCCTGGCGGCGTGGGCGACCGTCCTCGCCGCGACGCTGTGCCTCGTGG
TCCTCCCGTTCCTGCTGGGCCGGGTCGTGTTCTCGCTTGTGCACCTGCCG
CGGCAATGGACCCACGACACGGCCAGCTTCGCCGTCGGCCTCACGATCCT
AAAGGCCGTTACCCCGTCGATCTACCGCGGGTGGTGCGCGGCGCGCCTCG
CGATCCTTGCCCGGCGGCGAACCCGGGACACGGCCGCCGTTACCCCGTCG
ATCTACCGCGGGTGGTGCGCGGCGCGCCTCGCGATCCTTGCCCGGCGGCG
AACCCGGGACACGGCC
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