prot_H-canaliculatus_F_contig12615.2194.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig12615.2194.1
Unique Nameprot_H-canaliculatus_F_contig12615.2194.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length136
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12615.2194.1 vs. uniprot
Match: A0A6H5JWM1_9PHAE (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM1_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 3.930e-59
Identity = 102/117 (87.18%), Postives = 111/117 (94.87%), Query Frame = 0 
Query:   15 GWDDPAGVAQGRWAWGTEPAGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLAATLCLVVLPFLLGRVVFSLVHLPRQWTHDTASFAVGLTILKAVTPSIYRGWCAARLAILARRR 131
            GWDDPAGVAQGRWAWG EP GEVQLNLAPRRRHGARAVPLVAVLLLAAWATVL A LCLVVLPFLLGR++FSL+HLPR+WTHDTASFAVGLT+LKAVTP+++R WCAARL +LARRR
Sbjct: 1156 GWDDPAGVAQGRWAWGAEPPGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLFSLIHLPRRWTHDTASFAVGLTLLKAVTPTLHRAWCAARLKLLARRR 1272
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12615.2194.1 vs. uniprot
Match: D8LBR1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR1_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 1.690e-48
Identity = 88/104 (84.62%), Postives = 94/104 (90.38%), Query Frame = 0 
Query:   15 GWDDPAGVAQGRWAWGTEPAGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLAATLCLVVLPFLLGRVVFSLVHLPRQWTHDTASFAVGLTILKAVTPSIYRG 118
            GWDDPAGVAQGRWAWG EP GEVQLNLAPRRRHGARAVPLVAVLLLAAWATVL A LCLVVLPFLLGR++FSL+HLPR+WTHDTASFAVGLT+LKA    +  G
Sbjct: 1072 GWDDPAGVAQGRWAWGAEPPGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLFSLIHLPRRWTHDTASFAVGLTLLKAALLQVEAG 1175
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12615.2194.1 vs. uniprot
Match: A0A7S2RW40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RW40_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 5.290e-19
Identity = 59/121 (48.76%), Postives = 73/121 (60.33%), Query Frame = 0 
Query:    4 IVGPPLRRPPPGWDDPAGVAQGRWAWGTEPAGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLAATLCLVVL----PFLLGRVVFSLVHLPRQWTHDTASFAVGLTILKAVTP---SIYR 117
            +VG PL+RPPPGWDD AG  QGRWAWG E   EV+ NLA RR      + L  VLL   WATVL    CLV+L    P +LGR VF L+ +P    HD  +FA+G+ +  A  P   ++YR
Sbjct:  840 LVGAPLQRPPPGWDDLAGGGQGRWAWGNEEPTEVERNLAKRRTPDRLTLRL-GVLLGLGWATVL----CLVLLGTWAPLVLGRRVFQLLRIPTSVIHDPFAFALGIGLCLAARPLVAAVYR 955
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12615.2194.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JWM1_9PHAE3.930e-5987.18RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
D8LBR1_ECTSI1.690e-4884.62RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
A0A7S2RW40_9STRA5.290e-1948.76Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 121..136
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 80..98
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 54..79
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..53
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 99..120
NoneNo IPR availableTMHMMTMhelixcoord: 98..120
NoneNo IPR availableTMHMMTMhelixcoord: 54..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12615contigH-canaliculatus_F_contig12615:614..2290 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12615.2194.1mRNA_H-canaliculatus_F_contig12615.2194.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig12615 614..2290 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig12615.2194.1 ID=prot_H-canaliculatus_F_contig12615.2194.1|Name=mRNA_H-canaliculatus_F_contig12615.2194.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=136bp
EGIIVGPPLRRPPPGWDDPAGVAQGRWAWGTEPAGEVQLNLAPRRRHGAR
AVPLVAVLLLAAWATVLAATLCLVVLPFLLGRVVFSLVHLPRQWTHDTAS
FAVGLTILKAVTPSIYRGWCAARLAILARRRTRDTA
back to top