mRNA_H-canaliculatus_F_contig12550.2150.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12550.2150.1
Unique NamemRNA_H-canaliculatus_F_contig12550.2150.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12550.2150.1 vs. uniprot
Match: A0A6H5JJC7_9PHAE (MHD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJC7_9PHAE)

HSP 1 Score: 404 bits (1039), Expect = 3.960e-139
Identity = 199/208 (95.67%), Postives = 204/208 (98.08%), Query Frame = 1 
Query:    1 ETMDYGYPQILSIDVLRTYINLGTIRSIDGDPQESGQLTSQITGAIDWRREGIRHRKNEVYIDVLESVNLLMSSNGAVLRNDVTGKVIMKTLLSGMPDCKFGLNDKIIMERDASARGRPDRRPSVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEEGRARVTINLKVSAQFSYKLFGSNIVVKV 624
            ETMDYGYPQILSIDVLRTYINLGTIRS+DGDPQESGQLTSQITGAIDWRREGIRHRKNEVYIDVLESVNLLMSSNGAVLRNDV+GKVIMKTLLSGMPDCKFGLNDK+IMERD +ARGR DRRP+VALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEEGR RVTINLKVSA FSYKLFGSNIVVKV
Sbjct:  116 ETMDYGYPQILSIDVLRTYINLGTIRSLDGDPQESGQLTSQITGAIDWRREGIRHRKNEVYIDVLESVNLLMSSNGAVLRNDVSGKVIMKTLLSGMPDCKFGLNDKLIMERDGNARGRQDRRPAVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEEGRGRVTINLKVSADFSYKLFGSNIVVKV 323
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BLAST of mRNA_H-canaliculatus_F_contig12550.2150.1 vs. uniprot
Match: A0A835Z9G3_9STRA (Clathrin assembly complex, medium subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G3_9STRA)

HSP 1 Score: 348 bits (893), Expect = 1.090e-116
Identity = 172/214 (80.37%), Postives = 190/214 (88.79%), Query Frame = 1 
Query:    1 ETMDYGYPQILSIDVLRTYINLGTIRSIDGDPQESGQLTSQITGAIDWRREGIRHRKNEVYIDVLESVNLLMSSNGAVLRNDVTGKVIMKTLLSGMPDCKFGLNDKIIMERDASAR--GRPDR----RPSVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEEGRARVTINLKVSAQFSYKLFGSNIVVKV 624
            ETMDYGYPQI +IDVLR+YINLG+I ++DGDP E+GQLTSQITGAIDWRREGIRHRKNEVYIDV ESVNLLMSS GAVLRNDVTGKV+M+T LSGMP+CKFGLNDK+IME++A  R  GR       + SV LDDCTFHRCVRLGKFDADRTITFIPP+GEFELMRYRV+DNVNLP RI+PAVQEEGR RVTINLK SAQFSYKLF  N+V+KV
Sbjct:  131 ETMDYGYPQITAIDVLRSYINLGSISTLDGDPNETGQLTSQITGAIDWRREGIRHRKNEVYIDVHESVNLLMSSTGAVLRNDVTGKVMMRTFLSGMPECKFGLNDKLIMEKEALERAGGRTAATAHGKRSVELDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVSDNVNLPFRIVPAVQEEGRTRVTINLKCSAQFSYKLFAENVVIKV 344
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BLAST of mRNA_H-canaliculatus_F_contig12550.2150.1 vs. uniprot
Match: A0A6V1NZE4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NZE4_HETAK)

HSP 1 Score: 310 bits (795), Expect = 4.100e-102
Identity = 144/211 (68.25%), Postives = 180/211 (85.31%), Query Frame = 1 
Query:    1 ETMDYGYPQILSIDVLRTYINLGTIRSIDGDPQESGQLTSQITGAIDWRREGIRHRKNEVYIDVLESVNLLMSSNGAVLRNDVTGKVIMKTLLSGMPDCKFGLNDKIIMERDASARGRP---DRRPSVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEEGRARVTINLKVSAQFSYKLFGSNIVVKV 624
            ETMD+GYPQ+L+IDVLR++INLGT+  +D    E   LT+QITGAIDWRR G+R+RKNEVYIDVLESVNLLMS+NG VL N+VTG+VIMKT LSGMP+C+FGLNDK+IMERD+SA  R     ++  VA+DDCTFHRCVRLGKFDADRTITF+PP+GEFELMRYRV DN++ P +++PAVQEEGR+RV+I +KV  +F  KL+ +N+V+K+
Sbjct:  115 ETMDFGYPQLLAIDVLRSFINLGTVNVLDDQDLEPNALTAQITGAIDWRRPGLRYRKNEVYIDVLESVNLLMSTNGTVLENNVTGQVIMKTALSGMPECRFGLNDKLIMERDSSASARAVHGAKKGGVAIDDCTFHRCVRLGKFDADRTITFVPPDGEFELMRYRVTDNIHCPFQVVPAVQEEGRSRVSITVKVMGKFGQKLYATNVVIKI 325
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BLAST of mRNA_H-canaliculatus_F_contig12550.2150.1 vs. uniprot
Match: A0A4D9D2J2_9STRA (MHD domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2J2_9STRA)

HSP 1 Score: 301 bits (772), Expect = 3.010e-98
Identity = 147/211 (69.67%), Postives = 180/211 (85.31%), Query Frame = 1 
Query:    1 ETMDYGYPQILSIDVLRTYINLGTIRSIDGDPQESGQLTSQITGAIDWRREGIRHRKNEVYIDVLESVNLLMSSNGAVLRNDVTGKVIMKTLLSGMPDCKFGLNDKIIMERDAS--ARGRPDRRPS-VALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEEGRARVTINLKVSAQFSYKLFGSNIVVKV 624
            ETMD+GYPQ  +I+VLR YINLGT+++ + + QE   LTSQITG IDWRR+GIR+RKNEVYIDVLESVN+LMS+ G VL +DVTG+++MK LLSG P+CKFGLNDK+IM+R+A+  A G   RR + V +DDCTFHRCVRLG+FDADRTITFIPP+GEFELMRYRV +NVNLP R+IPA+QEEGR RV +N+KV+A FS KLFG N+V+KV
Sbjct:  116 ETMDFGYPQNCAIEVLRQYINLGTVQA-EMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKV 325
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BLAST of mRNA_H-canaliculatus_F_contig12550.2150.1 vs. uniprot
Match: A0A7S2MKC8_9STRA (Hypothetical protein n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S2MKC8_9STRA)

HSP 1 Score: 301 bits (772), Expect = 3.100e-98
Identity = 149/209 (71.29%), Postives = 179/209 (85.65%), Query Frame = 1 
Query:    1 ETMDYGYPQILSIDVLRTYINLGTIRSIDGDPQESGQLTSQITGAIDWRREGIRHRKNEVYIDVLESVNLLMSSNGAVLRNDVTGKVIMKTLLSGMPDCKFGLNDKIIMERDASARGRPDRRPSVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEE-GRARVTINLKVSAQFSYKLFGSNIVVKV 624
            ETMD+GYPQ  ++DVLR YINLG IR  D +P+ S QLTSQITGAIDWRREGIRH+KNEVYIDVLESVNLL+SS G +LRN+VTG+V M T L+GMP+CKFGLNDK+++E+++S +    R+P V +DDCTFHRCVRLGKFDADRTITFIPP+GEFELMRYRV DN+NLP RIIPAVQEE G+ +V+INLKV A FS KLF +++ +KV
Sbjct:  154 ETMDFGYPQNCAVDVLRLYINLGNIRPQD-EPEPS-QLTSQITGAIDWRREGIRHKKNEVYIDVLESVNLLLSSTGNILRNEVTGQVQMNTKLTGMPECKFGLNDKLVIEKESSGQ----RKPGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTDNINLPFRIIPAVQEEKGQTKVSINLKVIANFSDKLFATHVAIKV 356
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BLAST of mRNA_H-canaliculatus_F_contig12550.2150.1 vs. uniprot
Match: A0A7S1VT68_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VT68_9STRA)

HSP 1 Score: 298 bits (762), Expect = 8.140e-97
Identity = 146/209 (69.86%), Postives = 177/209 (84.69%), Query Frame = 1 
Query:    1 ETMDYGYPQILSIDVLRTYINLGTIRSIDGDPQESGQLTSQITGAIDWRREGIRHRKNEVYIDVLESVNLLMSSNGAVLRNDVTGKVIMKTLLSGMPDCKFGLNDKIIMERDASARGRPDRRPSVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEE-GRARVTINLKVSAQFSYKLFGSNIVVKV 624
            ETMD+GYPQ  ++DVLR YINLG  R  D +P+ S QLTSQITGAIDWRREGI+H++NEVYIDVLESVNLL+SS G++LRN+VTG+V M T L+GMP+CKFGLNDK+++ER+ S      R+P V +DDCTFHRCVRLGKFDADRTITFIPP+GEFELMRYRV DN+NLP RIIPAVQEE G  RV+INLK+ A FS +LF +++V+K+
Sbjct:  147 ETMDFGYPQNCAVDVLRLYINLGQTRPQD-EPEPS-QLTSQITGAIDWRREGIKHKRNEVYIDVLESVNLLLSSTGSILRNEVTGQVQMNTKLTGMPECKFGLNDKLVIEREESGA----RKPGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTDNINLPFRIIPAVQEEHGHTRVSINLKIIANFSDQLFATHVVIKI 349
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BLAST of mRNA_H-canaliculatus_F_contig12550.2150.1 vs. uniprot
Match: A0A7S2YSX5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YSX5_9STRA)

HSP 1 Score: 292 bits (747), Expect = 2.740e-96
Identity = 143/210 (68.10%), Postives = 176/210 (83.81%), Query Frame = 1 
Query:    1 ETMDYGYPQILSIDVLRTYINLGTIRS-IDGDPQESGQLTSQITGAIDWRREGIRHRKNEVYIDVLESVNLLMSSNGAVLRNDVTGKVIMKTLLSGMPDCKFGLNDKIIMERDASARGRPDRRPSVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEE-GRARVTINLKVSAQFSYKLFGSNIVVKV 624
            ETMD+GYPQ  ++DVLR YINLGT +  ++ +P    QLTSQITGAIDWRREGIRH+KNEVYIDVLESVNLL+S+ G+VLRN+VTG V M T L+GMP+CKFGLNDK++++++     + DR+P V +DDCTFHRCVRLGKFDADRTITFIPP+GEFELMRYRV DN+NLP RIIPAVQEE    +V+INLKV A FS +LF +++V+K+
Sbjct:  116 ETMDFGYPQNCAVDVLRLYINLGTAKEKVETEPS---QLTSQITGAIDWRREGIRHKKNEVYIDVLESVNLLLSNTGSVLRNEVTGAVQMNTKLTGMPECKFGLNDKLVIDKE-----KEDRKPGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTDNINLPFRIIPAVQEEPSLTKVSINLKVIANFSDQLFATHVVLKI 317
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BLAST of mRNA_H-canaliculatus_F_contig12550.2150.1 vs. uniprot
Match: B7FSB1_PHATC (Predicted protein n=2 Tax=Naviculales TaxID=38748 RepID=B7FSB1_PHATC)

HSP 1 Score: 293 bits (751), Expect = 1.440e-95
Identity = 145/209 (69.38%), Postives = 176/209 (84.21%), Query Frame = 1 
Query:    1 ETMDYGYPQILSIDVLRTYINLGTIRSIDGDPQESGQLTSQITGAIDWRREGIRHRKNEVYIDVLESVNLLMSSNGAVLRNDVTGKVIMKTLLSGMPDCKFGLNDKIIMERDASARGRPDRRPSVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQE-EGRARVTINLKVSAQFSYKLFGSNIVVKV 624
            ETMD+GYPQ  ++DVLR YINLGT +  D +P+ S +LTSQITGAIDWRREGIRH+KNEVYIDVLESVNLL+SS G VLRN+V G V M T L+GMP+CKFGLNDK+++E+D     + DR+PSV +DDCTFHRCVRLGKFDADRTITFIPP+GEFELMRYRV DN+NLP RIIPAVQE +   +V+I+LKV A FS +LF +++V+K+
Sbjct:  116 ETMDFGYPQNCAVDVLRLYINLGTAKPQD-EPEPS-KLTSQITGAIDWRREGIRHKKNEVYIDVLESVNLLLSSTGNVLRNEVAGSVQMNTKLTGMPECKFGLNDKLVIEKD-----KEDRKPSVDIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTDNINLPFRIIPAVQESQNNTKVSIDLKVIANFSDQLFATHVVIKI 317
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BLAST of mRNA_H-canaliculatus_F_contig12550.2150.1 vs. uniprot
Match: A0A024G6X3_9STRA (MHD domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G6X3_9STRA)

HSP 1 Score: 288 bits (738), Expect = 9.030e-95
Identity = 138/213 (64.79%), Postives = 177/213 (83.10%), Query Frame = 1 
Query:    1 ETMDYGYPQILSIDVLRTYINLGTIRSIDGD-PQESGQLTSQITGAIDWRREGIRHRKNEVYIDVLESVNLLMSSNGAVLRNDVTGKVIMKTLLSGMPDCKFGLNDKIIMER-DASARGRPDRRPS---VALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEEGRARVTINLKVSAQFSYKLFGSNIVVKV 624
            ET+DYGYPQ  SIDVL+ YINLG++ S DG    +  QLTSQITGAIDWRREGI++++NEVY+DV ESVNLLMSSNG VLRN+V G+V+MKT L+GMP+CK GLNDK+IM++ DA+    P ++ +   V +DDCTFHRCVRLGKFDADRTITFIPP+GEFELM+YRV +NVNLP +I+PA QE+G  R+++ LK++A FS +LF +N+V+K+
Sbjct:  116 ETVDYGYPQNCSIDVLKMYINLGSLSSSDGPLATQPSQLTSQITGAIDWRREGIKYKRNEVYLDVFESVNLLMSSNGTVLRNEVAGQVVMKTSLTGMPECKLGLNDKLIMQKGDAAGSKIPGQKRATRDVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMKYRVTENVNLPFKIMPAYQEQGTTRLSVTLKIAATFSPRLFATNLVIKI 328
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BLAST of mRNA_H-canaliculatus_F_contig12550.2150.1 vs. uniprot
Match: A0A7S4HKQ6_9STRA (Hypothetical protein n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HKQ6_9STRA)

HSP 1 Score: 292 bits (747), Expect = 1.830e-94
Identity = 145/208 (69.71%), Postives = 176/208 (84.62%), Query Frame = 1 
Query:    1 ETMDYGYPQILSIDVLRTYINLGTIRSIDGDPQESGQLTSQITGAIDWRREGIRHRKNEVYIDVLESVNLLMSSNGAVLRNDVTGKVIMKTLLSGMPDCKFGLNDKIIMERDASARGRPDRRPSVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEEGRARVTINLKVSAQFSYKLFGSNIVVKV 624
            ETMD+GYPQ  ++DVLR YINLG +R  D +P+ S QLTSQITGAIDWRREGIR++KNEVYIDVLESVNLL+SS G VLRN+VTG+V M T L+GMP+CKFGLNDK+++++++ A+    R+P V +DDCTFHRCVRLGKFDADRTITFIPP+GEFELMRYRV DN+NLP RI PAV EE   +V+INLKV A FS KLF +++V+KV
Sbjct:  156 ETMDFGYPQNCAVDVLRLYINLGNVRPQD-EPEPS-QLTSQITGAIDWRREGIRYKKNEVYIDVLESVNLLLSSTGNVLRNEVTGQVQMNTKLTGMPECKFGLNDKLVIDKESGAQ----RKPGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTDNINLPFRITPAVLEEAM-KVSINLKVIANFSDKLFATHVVIKV 356
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12550.2150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJC7_9PHAE3.960e-13995.67MHD domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z9G3_9STRA1.090e-11680.37Clathrin assembly complex, medium subunit n=1 Tax=... [more]
A0A6V1NZE4_HETAK4.100e-10268.25Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9D2J2_9STRA3.010e-9869.67MHD domain-containing protein n=3 Tax=Monodopsidac... [more]
A0A7S2MKC8_9STRA3.100e-9871.29Hypothetical protein n=4 Tax=Bacillariophyta TaxID... [more]
A0A7S1VT68_9STRA8.140e-9769.86Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2YSX5_9STRA2.740e-9668.10Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
B7FSB1_PHATC1.440e-9569.38Predicted protein n=2 Tax=Naviculales TaxID=38748 ... [more]
A0A024G6X3_9STRA9.030e-9564.79MHD domain-containing protein n=1 Tax=Albugo candi... [more]
A0A7S4HKQ6_9STRA1.830e-9469.71Hypothetical protein n=3 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12550contigH-canaliculatus_F_contig12550:489..3278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score401.7
Seed ortholog evalue2e-109
Seed eggNOG ortholog2880.D8LRL7
Preferred nameAP2M1
KEGG koko:K11826
KEGG Pathwayko04144,ko04721,ko04961,ko05016,map04144,map04721,map04961,map05016
GOsGO:0000323,GO:0002090,GO:0002092,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0002791,GO:0002793,GO:0003674,GO:0005048,GO:0005102,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0005905,GO:0006403,GO:0006807,GO:0006810,GO:0006886,GO:0006897,GO:0006898,GO:0006900,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007267,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0008565,GO:0009056,GO:0009057,GO:0009653,GO:0009893,GO:0009987,GO:0010008,GO:0010171,GO:0010604,GO:0010646,GO:0010647,GO:0010939,GO:0010940,GO:0010941,GO:0010942,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016055,GO:0016185,GO:0016192,GO:0019222,GO:0019538,GO:0019882,GO:0019884,GO:0019886,GO:0019904,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030100,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030122,GO:0030125,GO:0030128,GO:0030131,GO:0030132,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030141,GO:0030163,GO:0030424,GO:0030659,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031201,GO:0031323,GO:0031325,GO:0031410,GO:0031623,GO:0031982,GO:0032501,GO:0032502,GO:0032535,GO:0032799,GO:0032801,GO:0032802,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033218,GO:0033227,GO:0033267,GO:0033365,GO:0034381,GO:0034383,GO:0034613,GO:0035567,GO:0036019,GO:0036020,GO:0036465,GO:0042277,GO:0042886,GO:0042995,GO:0043005,GO:0043112,GO:0043170,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043679,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044306,GO:0044325,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0045202,GO:0045334,GO:0045807,GO:0046907,GO:0048002,GO:0048013,GO:0048259,GO:0048260,GO:0048475,GO:0048488,GO:0048489,GO:0048518,GO:0048519,GO:0048522,GO:0048856,GO:0050657,GO:0050658,GO:0050690,GO:0050708,GO:0050714,GO:0050750,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051236,GO:0051239,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0051716,GO:0060071,GO:0060255,GO:0060341,GO:0060627,GO:0061024,GO:0061356,GO:0061357,GO:0061512,GO:0065003,GO:0065007,GO:0065008,GO:0070142,GO:0070201,GO:0070325,GO:0070382,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072583,GO:0090066,GO:0090087,GO:0090175,GO:0097006,GO:0097458,GO:0097479,GO:0097480,GO:0097494,GO:0097499,GO:0097708,GO:0097718,GO:0098588,GO:0098590,GO:0098657,GO:0098693,GO:0098793,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099003,GO:0099503,GO:0099504,GO:0120025,GO:0120038,GO:0150034,GO:0198738,GO:1900242,GO:1900244,GO:1901564,GO:1901565,GO:1901575,GO:1903076,GO:1903077,GO:1903421,GO:1903423,GO:1903530,GO:1903532,GO:1903827,GO:1903828,GO:1904375,GO:1904376,GO:1904951,GO:1905114,GO:1905330,GO:1905475,GO:1905476,GO:1990075,GO:2000026,GO:2000027
EggNOG free text desc.endocytosis
EggNOG OGsKOG0938@1,KOG0938@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size624
Cds size618
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12550.2150.1prot_H-canaliculatus_F_contig12550.2150.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12550 495..3278 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928970.9243276-UTR-H-canaliculatus_F_contig12550:488..4941622928970.9243276-UTR-H-canaliculatus_F_contig12550:488..494Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12550 489..494 +
1696845634.742178-UTR-H-canaliculatus_F_contig12550:488..4941696845634.742178-UTR-H-canaliculatus_F_contig12550:488..494Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12550 489..494 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928970.943479-CDS-H-canaliculatus_F_contig12550:494..6651622928970.943479-CDS-H-canaliculatus_F_contig12550:494..665Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12550 495..665 +
1696845634.755121-CDS-H-canaliculatus_F_contig12550:494..6651696845634.755121-CDS-H-canaliculatus_F_contig12550:494..665Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12550 495..665 +
1622928970.961715-CDS-H-canaliculatus_F_contig12550:1126..12321622928970.961715-CDS-H-canaliculatus_F_contig12550:1126..1232Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12550 1127..1232 +
1696845634.7639155-CDS-H-canaliculatus_F_contig12550:1126..12321696845634.7639155-CDS-H-canaliculatus_F_contig12550:1126..1232Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12550 1127..1232 +
1622928970.9769094-CDS-H-canaliculatus_F_contig12550:2432..26281622928970.9769094-CDS-H-canaliculatus_F_contig12550:2432..2628Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12550 2433..2628 +
1696845634.7722812-CDS-H-canaliculatus_F_contig12550:2432..26281696845634.7722812-CDS-H-canaliculatus_F_contig12550:2432..2628Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12550 2433..2628 +
1622928970.9928901-CDS-H-canaliculatus_F_contig12550:3133..32781622928970.9928901-CDS-H-canaliculatus_F_contig12550:3133..3278Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12550 3134..3278 +
1696845634.7819498-CDS-H-canaliculatus_F_contig12550:3133..32781696845634.7819498-CDS-H-canaliculatus_F_contig12550:3133..3278Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12550 3134..3278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12550.2150.1

>prot_H-canaliculatus_F_contig12550.2150.1 ID=prot_H-canaliculatus_F_contig12550.2150.1|Name=mRNA_H-canaliculatus_F_contig12550.2150.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=206bp
MDYGYPQILSIDVLRTYINLGTIRSIDGDPQESGQLTSQITGAIDWRREG
IRHRKNEVYIDVLESVNLLMSSNGAVLRNDVTGKVIMKTLLSGMPDCKFG
LNDKIIMERDASARGRPDRRPSVALDDCTFHRCVRLGKFDADRTITFIPP
EGEFELMRYRVADNVNLPLRIIPAVQEEGRARVTINLKVSAQFSYKLFGS
NIVVKV
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mRNA from alignment at H-canaliculatus_F_contig12550:489..3278+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12550.2150.1 ID=mRNA_H-canaliculatus_F_contig12550.2150.1|Name=mRNA_H-canaliculatus_F_contig12550.2150.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2790bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12550:489..3278+ (Hapterophycus canaliculatus Oshoro5f female)
GAAACTATGGACTATGGGTACCCCCAGATCCTATCCATCGACGTCCTCCG
CACGTACATCAACCTCGGAACCATCCGATCGATAGACGGGGATCCCCAGG
AGAGCGGTCAGCTGACGAGCCAGATCACAGGGGCGATTGACTGGCGACGA
GAAGGCATCAGGCATCGCAAAAATGAGGTGTGGTTGCTGCTTTCAGTGCT
TTCAGTTCTACTGCATCGTGCACCGTGTCGCCGCCTACGTCGCCGTTTGT
CTGCCGCCTTTCTTCCTGTGAAGGGCTGGTGCTCCTCGCTTATTTGGCCA
CATGATGGAAAGGACAAGTCGGAACGTCCATGTTGTCGCCCCGCCCTCTG
CTCCCCCCCCCGCCTATCTCTCCGTCGCAATTCGTCGGGCAACAATCGAA
TCGCCTTGCGGATCACACAACGCCCTCGAACCACTATTTTTTTTTATCAA
CGTTGATCAGTCGTCCACGTTCAGCTTGGCTTCATTTCGACTTCCAGCTT
CCTTGTGTTGCCAGTGCTGGTGCCTGTCCATCTGTCGGCCTCGGCCTGCC
TGTCCGGTCTGCCTCATCTGACCGTCATTTCTGTCCGGCTGTGTCCTATT
CTTTGGGCGGGTGTGAACCGGACGGGTGTGGCCTTCAGGTGTATATCGAC
GTCCTCGAGTCGGTAAACCTGCTCATGTCTTCGAACGGCGCCGTCCTTAG
AAATGACGTCACCGGGAAGGTCATCATGAAAACCCTCCTCTCAGGTGAGC
GACGACCAACACCTCGGCGATCACTCTAAGAATGATGTCTCCTCTAGCCA
TTGCAATAGGCCTACGGAGCATGAGTCCATTCGGACCTTGTCGATGTTGT
GTTTCTTTCGATTGCAACGGGAACCTGTCTATCTAGCCACTACCCCGGCG
GCGCACGGGTAGGCTCACGCAGACGCCCCGCCCCGCGCCGCCCCGCCCTG
AATTTTCCATTCTTCCTTTTCGAGCGTTCGACTGGTCGCCGCTCTCTCGT
ATCATGCGACCCTCGATAGAAGCAGATCTCTGTAAGCTGTGTGTCTGGGT
GAGATTCACCCCCAACTCAACTCTAGTGCTGCATCACGAGACTTGTACGC
AAGACCGGCCCATCCAAGTAATACAAACATCCAAACATCCAAGCTTTGCC
TATGCTCTCCGGTCGTGGGTTAGAGTTAGTGCGCTTTGGACTCAAAGAAG
GGAGGCACAGCGCATCAACCTGCTTTCAACTGGACGCACTAACCTAATCC
ACAACCTGATCCACGAAACAGTGGAGATGAAATACGAGCACGACCCAATA
ACCGCAACAACGATAACGAACCAACGGCGAGCTGTTGAAGCATATCGACT
TTCACGACAATCAGTTGCTGGTTGTGCGGTCCCGGTCTATCGCAGTGCAC
AGCCATACCACTATGGTACGAAATGAGGTCGTCAAATATGAGAACAACGG
GACCCGTCTGCCTAGTCCAGGCTCAGTGACTCTTAGTAGGGAGCTTCCTC
TTGAGGTAGACGACGTAGATAGCAACCTCCCCAAAGACTCTCTAGGGCTA
CCGAAAGACGGCGGTGCTGCTGAGCCGTCACACTTCACCTCTTAGCACTT
GCTGCACTCTCCTCATTTGTCATACCATACCAAACCGGCCGGCACCACGC
CTTCCGAAAGCTGTCTACAAGTAGACGAGTTTGCAGCCCAGTGCATAGGA
CACGGCAAGACACGGCAAGTCAAGTCAAGGCAAGGCAAGGCAAGGCAAGG
CAAGGGAAGGCGAGACAGCAACAGAGAACAGCCTAACCTCACCTGACAGG
GCAACGCGCACGCCACCACACCACACCACACCACACCACACCACACCACA
CCACACCACAATATAACACAGCATGAAAAAGCCACCTTACTCGAACCCAG
ACAAGACAAGACGATTCAACGCAAGTCGACTTCACACGCCGCAGGGATGC
CCGACTGCAAGTTCGGGCTGAACGACAAGATAATCATGGAACGAGACGCG
TCGGCAAGAGGTAGGCCGGACCGAAGACCTTCCGTTGCGCTGGACGACTG
CACGTTCCACCGCTGCGTGCGGCTGGGAAAGTTCGACGCCGACCGGACGA
TCACCTTCATTCCTCCCGAGGGAGAGTTCGAGCTTATGCGGTCAGTGCTA
CTTGGCTGCTGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CAGCCATATGATTTTCGGGAAGGGGGCTCTGTAAACATGGCCGCCCGTGG
TGGCGTGCCGTGGGAGGCCTGTGGTGCGTCCAAGCGCTACCGCTCGTCGT
GTAGAACCACGGGGAAGTGGTGTCGTGGTGCATGCGCCCTACGTTGCTAT
GGAATGTCCTTGGTACTGCATTGTCATCATCATCTACACCACGCCGTGCC
CAGAAGGAGCGAGAGCTTGGAGCGCGGAGGACGTCGCCGTGAAGCTCCCT
TCCGTCCGGCGGCGTTGGCTTCATGGGTGAAGAAGCCCACGGCGTTCTAA
TCTCTTCCTCTGTCTGTTCCTGTCCCCGAAACATGTTCCCGCTTCGAAGA
CCTGCGAGACGAATGCCGGCCTGACGCTTCTTCTGCTTTGCCGACTCTGT
TTGTGCGACGTGCACGGCGTTTAACGTATGTACGGTGTTGGCCAGATACC
GGGTCGCAGACAACGTCAACCTTCCTCTTCGAATTATTCCAGCGGTTCAA
GAGGAGGGAAGAGCTCGCGTCACGATCAACCTCAAGGTTTCGGCGCAGTT
CAGCTACAAGCTTTTCGGAAGCAACATCGTGGTAAAGGTA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12550:489..3278+

>mRNA_H-canaliculatus_F_contig12550.2150.1 ID=mRNA_H-canaliculatus_F_contig12550.2150.1|Name=mRNA_H-canaliculatus_F_contig12550.2150.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1236bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12550:489..3278+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGACTATGGGTACCCCCAGATCCTATCCATCGACGTCCTCCGCACGTA
CATCAACCTCGGAACCATCCGATCGATAGACGGGGATCCCCAGGAGAGCG
GTCAGCTGACGAGCCAGATCACAGGGGCGATTGACTGGCGACGAGAAGGC
ATCAGGCATCGCAAAAATGAGATGGACTATGGGTACCCCCAGATCCTATC
CATCGACGTCCTCCGCACGTACATCAACCTCGGAACCATCCGATCGATAG
ACGGGGATCCCCAGGAGAGCGGTCAGCTGACGAGCCAGATCACAGGGGCG
ATTGACTGGCGACGAGAAGGCATCAGGCATCGCAAAAATGAGGTGTATAT
CGACGTCCTCGAGTCGGTAAACCTGCTCATGTCTTCGAACGGCGCCGTCC
TTAGAAATGACGTCACCGGGAAGGTCATCATGAAAACCCTCCTCTCAGGT
GTATATCGACGTCCTCGAGTCGGTAAACCTGCTCATGTCTTCGAACGGCG
CCGTCCTTAGAAATGACGTCACCGGGAAGGTCATCATGAAAACCCTCCTC
TCAGGGATGCCCGACTGCAAGTTCGGGCTGAACGACAAGATAATCATGGA
ACGAGACGCGTCGGCAAGAGGTAGGCCGGACCGAAGACCTTCCGTTGCGC
TGGACGACTGCACGTTCCACCGCTGCGTGCGGCTGGGAAAGTTCGACGCC
GACCGGACGATCACCTTCATTCCTCCCGAGGGAGAGTTCGAGCTTATGCG
GGATGCCCGACTGCAAGTTCGGGCTGAACGACAAGATAATCATGGAACGA
GACGCGTCGGCAAGAGGTAGGCCGGACCGAAGACCTTCCGTTGCGCTGGA
CGACTGCACGTTCCACCGCTGCGTGCGGCTGGGAAAGTTCGACGCCGACC
GGACGATCACCTTCATTCCTCCCGAGGGAGAGTTCGAGCTTATGCGATAC
CGGGTCGCAGACAACGTCAACCTTCCTCTTCGAATTATTCCAGCGGTTCA
AGAGGAGGGAAGAGCTCGCGTCACGATCAACCTCAAGGTTTCGGCGCAGT
TCAGCTACAAGCTTTTCGGAAGCAACATCGTGGTAAAGGTAATACCGGGT
CGCAGACAACGTCAACCTTCCTCTTCGAATTATTCCAGCGGTTCAAGAGG
AGGGAAGAGCTCGCGTCACGATCAACCTCAAGGTTTCGGCGCAGTTCAGC
TACAAGCTTTTCGGAAGCAACATCGTGGTAAAGGTA
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