mRNA_H-canaliculatus_F_contig10193.213.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10193.213.1
Unique NamemRNA_H-canaliculatus_F_contig10193.213.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10193.213.1 vs. uniprot
Match: D7FV99_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV99_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 1.980e-24
Identity = 55/116 (47.41%), Postives = 81/116 (69.83%), Query Frame = 1 
Query:  403 GDEPVSMGEYFNIFCYGNTPYECELVEDLAEMVYNGDFKCQVCDMDGVRQPTGGEEDLIGLADRDADDSGSDSWDTRDFIIVGLSGAVALSVIVGSAILVWLQCKKKERPAEASDP 750
            G+  V+MGE+ +I+C+ N PYECE V D +++V+NG+FKCQ+CD+DGV+Q +G + DL G  D+    S S+SWD++D+II+GLS A+AL +I+    LV    KK   P+E   P
Sbjct:  366 GETTVTMGEFDDIYCFANEPYECEFVYDQSDIVHNGEFKCQICDIDGVQQVSGTDGDLTGSIDQS---SSSNSWDSKDYIIIGLSAALALCIILAIGFLVARAYKKHRAPSETQPP 478
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BLAST of mRNA_H-canaliculatus_F_contig10193.213.1 vs. uniprot
Match: D7FVA4_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA4_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 1.690e-17
Identity = 43/101 (42.57%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:  403 GDEPVSMGEYFNIFCYGNTPYECELVEDLAEMVYNGDFKCQVCDMDGVRQPTGGEEDLIGLADRDADDSGSDSWDTRDFIIVGLSGAVALSVIVGSAILVW 705
            G+  V+MGE+ +++C+ N PYECE V D +++V++G+FKCQ+CD++G RQ +G ++DLI  ++R  D    DS      I++GLS A+ L+++V  A+ VW
Sbjct:  366 GETTVTMGEFNDMYCFANEPYECEFVYDQSDIVHSGEFKCQICDIEGERQQSGTDDDLIDASERSID---GDSSSDNQGIVIGLSLALGLTLVVIGALAVW 463
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BLAST of mRNA_H-canaliculatus_F_contig10193.213.1 vs. uniprot
Match: D7FVA0_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA0_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 3.020e-13
Identity = 41/112 (36.61%), Postives = 66/112 (58.93%), Query Frame = 1 
Query:  400 QGDEPVSMGEYFNIFCYGNTPYECELVEDLAEMVYNGDFKCQVCDMDGVRQPTGGEED--LIGLADRDAD--------------------DSGSDSWDTRDFIIVGLSGAVA 669
            +G+  V MGE+ +++C+GN PYECE V D +++V++G+F CQ+C +DGVRQ   G +D  + G+    +                      S S SW+++D++I+GLS AVA
Sbjct:  330 EGNTTVVMGEFNDMYCFGNDPYECEFVYDQSDIVHSGEFNCQLCVIDGVRQEVSGTDDDSVEGIGQTSSSTSVQEGXXXXXXXXTGKIDQSSSSGSWESKDYVIIGLSAAVA 441
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10193.213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FV99_ECTSI1.980e-2447.41Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FVA4_ECTSI1.690e-1742.57Probable extracellular nuclease n=1 Tax=Ectocarpus... [more]
D7FVA0_ECTSI3.020e-1336.61Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10193contigH-canaliculatus_F_contig10193:73..2870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2472
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10193.213.1prot_H-canaliculatus_F_contig10193.213.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10193 493..1262 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928647.6306992-UTR-H-canaliculatus_F_contig10193:72..4921622928647.6306992-UTR-H-canaliculatus_F_contig10193:72..492Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10193 73..492 +
1696845512.159511-UTR-H-canaliculatus_F_contig10193:72..4921696845512.159511-UTR-H-canaliculatus_F_contig10193:72..492Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10193 73..492 +
1622928648.0262003-UTR-H-canaliculatus_F_contig10193:1262..28701622928648.0262003-UTR-H-canaliculatus_F_contig10193:1262..2870Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10193 1263..2870 +
1696845512.1921153-UTR-H-canaliculatus_F_contig10193:1262..28701696845512.1921153-UTR-H-canaliculatus_F_contig10193:1262..2870Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10193 1263..2870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928647.997553-CDS-H-canaliculatus_F_contig10193:492..6531622928647.997553-CDS-H-canaliculatus_F_contig10193:492..653Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10193 493..653 +
1696845512.1693697-CDS-H-canaliculatus_F_contig10193:492..6531696845512.1693697-CDS-H-canaliculatus_F_contig10193:492..653Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10193 493..653 +
1622928648.0117943-CDS-H-canaliculatus_F_contig10193:979..12621622928648.0117943-CDS-H-canaliculatus_F_contig10193:979..1262Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10193 980..1262 +
1696845512.1809916-CDS-H-canaliculatus_F_contig10193:979..12621696845512.1809916-CDS-H-canaliculatus_F_contig10193:979..1262Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10193 980..1262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10193.213.1

>prot_H-canaliculatus_F_contig10193.213.1 ID=prot_H-canaliculatus_F_contig10193.213.1|Name=mRNA_H-canaliculatus_F_contig10193.213.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=148bp
MGEYFNIFCYGNTPYECELVEDLAEMVYNGDFKCQVCDMDGVRQPTGGEE
DLIGLADRDADDSGSDSWDTRDFIIVGLSGAVALSVIVGSAILVWLQCKK
KERPAEASDPGQPPTSTDPPLTTTDINAPAPVAPTTTTGAIQPTSQS*
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mRNA from alignment at H-canaliculatus_F_contig10193:73..2870+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10193.213.1 ID=mRNA_H-canaliculatus_F_contig10193.213.1|Name=mRNA_H-canaliculatus_F_contig10193.213.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2798bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10193:73..2870+ (Hapterophycus canaliculatus Oshoro5f female)
CGACGAGCGTTTAACTACCTCCCGATGACCGATTCCGTCTGCACCGATTT
GTGGCGTAATTCGACACGGTATACCGTTTTCTGGCGTTCGCCCAAAACAG
AATTTGATGCCACGTCAAAGCATATGATTGTCAATTGGCGCCACGTTTTG
CCACGCTCACCCGCCACACATGAATGTGACGCCTGTCATTTGTACCCCAG
AACCTCTGAGCTCTGGCCGAAGGGAGTACAGGTATTCAGGTTTGGAAGGT
GCGTCCCTGTACTGAGGTGCGCAGGGTATGCAGTCGAACTACATGGAAAA
GGTGAGCACAAGAAAATAATTGCGTGTTGTTGCCGACCATGGATTTGAAC
ACTTGAACATTTCCAACTCGCGACCGATTTGGCGTTTGTGGCCCGTGTGC
AGGGGGACGAACCGGTTTCGATGGGTGAGTATTTCAACATTTTTTGCTAC
GGCAACACTCCGTACGAGTGCGAACTCGTCGAGGATCTCGCCGAAATGGT
TTACAATGGCGACTTCAAGTGCCAGGTATGCGACATGGATGGCGTGCGGC
AGCCAACCGGCGGCGAAGAGGACTTGATCGGGTGAGTCGATATTTTTATC
GAGGGGAAATCACTTCTCAAACACCAACATCAGCTCGTGGCGAGCCCACC
GATGCAGAACCCATGGACATGACGTCCGAATACGCGCACACCAAGCATGG
CATGCCTATCGAAGCTACAGTTGACAGTGGTGCTCACATTCCTCCTTTCT
CAAGTTGACACGACAGGTCTTGGCTGCATCTCACTCCCGTCAATTTGAAT
CGTGCACTCTCACCCGCTCCGCCCTATTCCGCATCCAAAATACCGTTCGC
ACTGAACTACGCCAAGCAGTAGTCTAAGTCCACCCTTTCCTGCTCCATCG
CTTTCAGATTGGCCGACCGTGACGCTGACGACTCGGGCTCCGATTCATGG
GATACTCGAGACTTCATCATTGTTGGCCTCTCCGGTGCTGTGGCATTGTC
GGTCATTGTGGGTTCCGCTATTCTAGTGTGGCTGCAGTGCAAGAAAAAGG
AGCGACCTGCCGAAGCATCAGACCCAGGGCAGCCTCCCACATCAACAGAC
CCCCCTCTCACAACGACGGACATAAATGCGCCTGCCCCAGTAGCTCCAAC
TACCACGACAGGCGCGATCCAGCCTACAAGCCAATCCTGAAAGCATATAT
TGGGCGTGATTGAAGGGGTGGGGGGCTGGTGGGGCTGTTGCTGATAGGGA
GGAACGAGAACTTTCCGTGTCGTGGTGATGCAGGCCTACCTCTTGCTGGG
ATGGTCTGTATTGTTTTATCCATTCATGAAACTTGAAATGGGTTCAACCT
GCTTGACTCAGGGAGCTCAAGGGCGAGACGAGGTTTTTTTTTGTTTATAT
TTCGCCAAGAAAAGATTTAAGGGGTTGAGGGGTTATGGCGTTCGGACTTT
CATGAGCATGCAAAGGCGACTTTTCAAGACAGCCCACCCCCTCTACTTCT
GCACCTCCAAGATGACCCCTCCCAATCCTGACCTGCCTTGCTTGAACGCA
TAGCACCTCAAGGCTTTGGCTTCTTCGATGGAGGGAGTGGACGCACGTGC
ACGCAAAGATAAAGGTCTGCGTTTAGTTTTTCGCAGGGTTGTGCAGGGTT
GTGAATCGGGGAGATTGAATCGGGCTTATTGAATCGAATTTCGGTTGGGA
AAATTAGGACCACGCTTATGCCGGCCTTTAGCCGATGTTCGCGCAAAGTA
TGTAGAAACGTTTGAAGAAACTGTTCCGTGAGGAAGTGCGATAATATGCC
TGAAGTCCGCTGTTGACTTCCTCATGTACGGATTCTTACAAGAACAAACG
ACGTTTGAGGGCGTTTGGTTAGAAAGAACATCAAAAGTTGGTGTGAGTGA
GATTCGGAGTACGGAAGAAAGCAATTCGAGGGAACACGACGAAGGAGAGG
TTTCTTGGGATATAGACGGAATAAGCCGCTGGTTATTGCAACCCACCGAA
TTGCCTAGCGCTCTCCTTACCGGTGTCCCGGAAAATACCTGGTGCGGGGC
GCCTAACGGGGTCCCCCAGCGATACCGAAGTTAATCCTTTCGATAGAAGT
CGACATATAGCCTTACAGTAGGCGCCCGCTGTCAAGAACACAAACTTAGA
AGAAACAAGAGCTCAAATTTCCCAGAAAAATAAGAAAGAACGGCTAAGAA
ACACGGCTCAATCTTGGCCAAAGTTTAGAAAGAAAAGTCTCGATGAAAAA
CCGGGGCTACTGATACCCATCCCCGGTAGTGCATTTTTTGTCCCGGCGAA
GGGGGGCAGTTTTTTTTTGTGTCGCCCCCTCCCGCCTCCGTGTAGTTTTT
GGGTCTGTTTTTTGCTAACATCGCGGACCATCACATGCTCTTGGGGGGGA
ACGTGACCTTGTATGTAGCGCCAGCGACACATTTATTCACCGCTTTTGTG
TTTCGCGTCTGTGTATTATCCGCCTTTCGTCGCCCATAGTGGGAAGACAA
GTCACGTAGAGGGAAGGGCAGCCGGGCAACGCATGCATGTATTCGCAAGC
AAATACAAAAAGAAAATATTGCCGCTTTCCGGCTCTAGGCTACGTACTGC
CCATCCGGGTGAGCTAGCTTTACGGAGTTGTAGGAACATCTCCGTAGAAG
AGCAGGGGTGTACACATGACGTAATGGCATCTATATTTAGGGTCTCGGTG
ACATATTATGATCACCGCCATCTGCGTGTCCCCTGGAAAGCGCGTGCCGC
TTATTCCAGACCTTGCTTTGATCCGAAATCAATGAAGACATCAACAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10193:73..2870+

>mRNA_H-canaliculatus_F_contig10193.213.1 ID=mRNA_H-canaliculatus_F_contig10193.213.1|Name=mRNA_H-canaliculatus_F_contig10193.213.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=888bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10193:73..2870+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGTGAGTATTTCAACATTTTTTGCTACGGCAACACTCCGTACGAGTG
CGAACTCGTCGAGGATCTCGCCGAAATGGTTTACAATGGCGACTTCAAGT
GCCAGGTATGCGACATGGATGGCGTGCGGCAGCCAACCGGCGGCGAAGAG
GACTTGATCGGATGGGTGAGTATTTCAACATTTTTTGCTACGGCAACACT
CCGTACGAGTGCGAACTCGTCGAGGATCTCGCCGAAATGGTTTACAATGG
CGACTTCAAGTGCCAGGTATGCGACATGGATGGCGTGCGGCAGCCAACCG
GCGGCGAAGAGGACTTGATCGGATTGGCCGACCGTGACGCTGACGACTCG
GGCTCCGATTCATGGGATACTCGAGACTTCATCATTGTTGGCCTCTCCGG
TGCTGTGGCATTGTCGGTCATTGTGGGTTCCGCTATTCTAGTGTGGCTGC
AGTGCAAGAAAAAGGAGCGACCTGCCGAAGCATCAGACCCAGGGCAGCCT
CCCACATCAACAGACCCCCCTCTCACAACGACGGACATAAATGCGCCTGC
CCCAGTAGCTCCAACTACCACGACAGGCGCGATCCAGCCTACAAGCCAAT
CCTGAATTGGCCGACCGTGACGCTGACGACTCGGGCTCCGATTCATGGGA
TACTCGAGACTTCATCATTGTTGGCCTCTCCGGTGCTGTGGCATTGTCGG
TCATTGTGGGTTCCGCTATTCTAGTGTGGCTGCAGTGCAAGAAAAAGGAG
CGACCTGCCGAAGCATCAGACCCAGGGCAGCCTCCCACATCAACAGACCC
CCCTCTCACAACGACGGACATAAATGCGCCTGCCCCAGTAGCTCCAACTA
CCACGACAGGCGCGATCCAGCCTACAAGCCAATCCTGA
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