prot_H-canaliculatus_F_contig10193.213.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig10193.213.1
Unique Nameprot_H-canaliculatus_F_contig10193.213.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length148
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10193.213.1 vs. uniprot
Match: D7FV99_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV99_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 3.390e-27
Identity = 53/110 (48.18%), Postives = 77/110 (70.00%), Query Frame = 0 
Query:    1 MGEYFNIFCYGNTPYECELVEDLAEMVYNGDFKCQVCDMDGVRQPTGGEEDLIGLADRDADDSGSDSWDTRDFIIVGLSGAVALSVIVGSAILVWLQCKKKERPAEASDP 110
            MGE+ +I+C+ N PYECE V D +++V+NG+FKCQ+CD+DGV+Q +G + DL G  D+    S S+SWD++D+II+GLS A+AL +I+    LV    KK   P+E   P
Sbjct:  372 MGEFDDIYCFANEPYECEFVYDQSDIVHNGEFKCQICDIDGVQQVSGTDGDLTGSIDQS---SSSNSWDSKDYIIIGLSAALALCIILAIGFLVARAYKKHRAPSETQPP 478
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10193.213.1 vs. uniprot
Match: D7FVA4_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA4_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.740e-19
Identity = 41/95 (43.16%), Postives = 67/95 (70.53%), Query Frame = 0 
Query:    1 MGEYFNIFCYGNTPYECELVEDLAEMVYNGDFKCQVCDMDGVRQPTGGEEDLIGLADRDADDSGSDSWDTRDFIIVGLSGAVALSVIVGSAILVW 95
            MGE+ +++C+ N PYECE V D +++V++G+FKCQ+CD++G RQ +G ++DLI  ++R  D    DS      I++GLS A+ L+++V  A+ VW
Sbjct:  372 MGEFNDMYCFANEPYECEFVYDQSDIVHSGEFKCQICDIEGERQQSGTDDDLIDASERSID---GDSSSDNQGIVIGLSLALGLTLVVIGALAVW 463
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10193.213.1 vs. uniprot
Match: D7FVA0_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA0_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 5.130e-15
Identity = 39/105 (37.14%), Postives = 62/105 (59.05%), Query Frame = 0 
Query:    1 MGEYFNIFCYGNTPYECELVEDLAEMVYNGDFKCQVCDMDGVRQPTGGEED--LIGLADRDAD--------------------DSGSDSWDTRDFIIVGLSGAVA 83
            MGE+ +++C+GN PYECE V D +++V++G+F CQ+C +DGVRQ   G +D  + G+    +                      S S SW+++D++I+GLS AVA
Sbjct:  337 MGEFNDMYCFGNDPYECEFVYDQSDIVHSGEFNCQLCVIDGVRQEVSGTDDDSVEGIGQTSSSTSVQEGXXXXXXXXTGKIDQSSSSGSWESKDYVIIGLSAAVA 441
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10193.213.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FV99_ECTSI3.390e-2748.18Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FVA4_ECTSI1.740e-1943.16Probable extracellular nuclease n=1 Tax=Ectocarpus... [more]
D7FVA0_ECTSI5.130e-1537.14Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..72
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 73..96
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 97..147
NoneNo IPR availableTMHMMTMhelixcoord: 73..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10193contigH-canaliculatus_F_contig10193:493..1262 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10193.213.1mRNA_H-canaliculatus_F_contig10193.213.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig10193 73..2870 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig10193.213.1 ID=prot_H-canaliculatus_F_contig10193.213.1|Name=mRNA_H-canaliculatus_F_contig10193.213.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=148bp
MGEYFNIFCYGNTPYECELVEDLAEMVYNGDFKCQVCDMDGVRQPTGGEE
DLIGLADRDADDSGSDSWDTRDFIIVGLSGAVALSVIVGSAILVWLQCKK
KERPAEASDPGQPPTSTDPPLTTTDINAPAPVAPTTTTGAIQPTSQS*
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