prot_H-canaliculatus_F_contig10189.210.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig10189.210.1
Unique Nameprot_H-canaliculatus_F_contig10189.210.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length48
Homology
BLAST of mRNA_H-canaliculatus_F_contig10189.210.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 5.470e-15
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 0
Query:    7 KKFCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK 48
            KKFC+VNSKSARKKLV+ALFNVPRQA DLLPMYARLVAILD+
Sbjct:  892 KKFCYVNSKSARKKLVAALFNVPRQARDLLPMYARLVAILDQ 933          
BLAST of mRNA_H-canaliculatus_F_contig10189.210.1 vs. uniprot
Match: A0A835YRH9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 5.710e-10
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 0
Query:    8 KFCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK 48
            KFC  NSKSAR+KLV ALF  PRQ+LDLLP YARLVA LD+
Sbjct:  469 KFCHHNSKSARRKLVRALFEAPRQSLDLLPQYARLVATLDQ 509          
BLAST of mRNA_H-canaliculatus_F_contig10189.210.1 vs. uniprot
Match: A0A1X2G7E1_9FUNG (ARM repeat-containing protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2G7E1_9FUNG)

HSP 1 Score: 61.2 bits (147), Expect = 1.070e-9
Identity = 28/40 (70.00%), Postives = 35/40 (87.50%), Query Frame = 0
Query:    9 FCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK 48
            FC+VNSK+ARK+LV ALF VPRQ +DLLP Y RL+AIL++
Sbjct:  515 FCYVNSKNARKRLVKALFGVPRQRVDLLPYYGRLIAILNQ 554          
BLAST of mRNA_H-canaliculatus_F_contig10189.210.1 vs. uniprot
Match: A0A168QM14_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168QM14_ABSGL)

HSP 1 Score: 60.5 bits (145), Expect = 2.000e-9
Identity = 26/40 (65.00%), Postives = 35/40 (87.50%), Query Frame = 0
Query:    9 FCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK 48
            FC++NSK ARK+L+ AL N+PRQ +DLLP YARL+AIL++
Sbjct:  453 FCYMNSKGARKRLIKALLNIPRQRVDLLPYYARLIAILNQ 492          
BLAST of mRNA_H-canaliculatus_F_contig10189.210.1 vs. uniprot
Match: A0A8H7EU12_9FUNG (Uncharacterized protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7EU12_9FUNG)

HSP 1 Score: 60.5 bits (145), Expect = 2.000e-9
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 0
Query:    9 FCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILD 47
            FC+VNSK+ARK+LV  L NVPRQ LDLLP YARL+ IL+
Sbjct:  551 FCYVNSKAARKRLVKTLLNVPRQRLDLLPYYARLITILN 589          
BLAST of mRNA_H-canaliculatus_F_contig10189.210.1 vs. uniprot
Match: A0A8H7S8T3_9FUNG (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S8T3_9FUNG)

HSP 1 Score: 60.1 bits (144), Expect = 2.730e-9
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 0
Query:    9 FCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK 48
            FC++NSK+ARK+LV AL NVPRQ +DLLP Y+RL+AIL +
Sbjct:  539 FCYMNSKNARKRLVKALLNVPRQRVDLLPYYSRLIAILSQ 578          
BLAST of mRNA_H-canaliculatus_F_contig10189.210.1 vs. uniprot
Match: A0A162X8L0_PHYB8 (Uncharacterized protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162X8L0_PHYB8)

HSP 1 Score: 59.3 bits (142), Expect = 5.100e-9
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 0
Query:    1 LAPGEQKKFCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILD 47
            L  G   +FC+VNSK+ARK+LV  L  VPRQ +DLLP YARL+A+L+
Sbjct:  489 LIDGAAVEFCYVNSKTARKRLVKTLLGVPRQRVDLLPYYARLIAVLN 535          
BLAST of mRNA_H-canaliculatus_F_contig10189.210.1 vs. uniprot
Match: A0A1X2H9L6_SYNRA (Armadillo-type protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H9L6_SYNRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.100e-9
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 0
Query:    9 FCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK 48
            FC++NSK+ RK+LV AL NVPRQ +DLLP Y+RL+AIL +
Sbjct:  538 FCYINSKATRKRLVKALLNVPRQRVDLLPYYSRLIAILSQ 577          
BLAST of mRNA_H-canaliculatus_F_contig10189.210.1 vs. uniprot
Match: A0A077W9K0_9FUNG (MIF4G domain-containing protein n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077W9K0_9FUNG)

HSP 1 Score: 58.9 bits (141), Expect = 6.970e-9
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 0
Query:    9 FCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK 48
            FC++NSK+ARK+LV AL +VPRQ +DLLP YAR +AIL +
Sbjct:  549 FCYINSKAARKRLVKALLSVPRQRVDLLPYYARFIAILSR 588          
BLAST of mRNA_H-canaliculatus_F_contig10189.210.1 vs. uniprot
Match: A0A068RE09_9FUNG (Nonsense-mediated mrna decay factor n=2 Tax=Lichtheimia corymbifera JMRC:FSU:9682 TaxID=1263082 RepID=A0A068RE09_9FUNG)

HSP 1 Score: 58.9 bits (141), Expect = 6.980e-9
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 0
Query:    9 FCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK 48
            FC++NSK+ARK+LV AL +VPRQ +DLLP YAR +AIL +
Sbjct:  558 FCYINSKAARKRLVKALLSVPRQRVDLLPYYARFIAILSR 597          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10189.210.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEF3_ECTSI5.470e-1590.48Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
A0A835YRH9_9STRA5.710e-1075.61Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A1X2G7E1_9FUNG1.070e-970.00ARM repeat-containing protein n=1 Tax=Hesseltinell... [more]
A0A168QM14_ABSGL2.000e-965.00Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
A0A8H7EU12_9FUNG2.000e-971.79Uncharacterized protein n=1 Tax=Apophysomyces ossi... [more]
A0A8H7S8T3_9FUNG2.730e-967.50Uncharacterized protein n=1 Tax=Mucor circinatus T... [more]
A0A162X8L0_PHYB85.100e-959.57Uncharacterized protein n=1 Tax=Phycomyces blakesl... [more]
A0A1X2H9L6_SYNRA5.100e-965.00Armadillo-type protein n=1 Tax=Syncephalastrum rac... [more]
A0A077W9K0_9FUNG6.970e-965.00MIF4G domain-containing protein n=1 Tax=Lichtheimi... [more]
A0A068RE09_9FUNG6.980e-965.00Nonsense-mediated mrna decay factor n=2 Tax=Lichth... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039762Nonsense-mediated mRNA decay protein Nmd2/UPF2PANTHERPTHR12839NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2coord: 8..48
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 12..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10189contigH-canaliculatus_F_contig10189:4602..4745 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10189.210.1mRNA_H-canaliculatus_F_contig10189.210.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig10189 4602..4745 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig10189.210.1 ID=prot_H-canaliculatus_F_contig10189.210.1|Name=mRNA_H-canaliculatus_F_contig10189.210.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=48bp
LAPGEQKKFCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR039762Nmd2/UPF2