mRNA_H-canaliculatus_F_contig10189.210.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10189.210.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI) HSP 1 Score: 76.3 bits (186), Expect = 5.470e-15 Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 1 Query: 19 KKFCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK 144 KKFC+VNSKSARKKLV+ALFNVPRQA DLLPMYARLVAILD+ Sbjct: 892 KKFCYVNSKSARKKLVAALFNVPRQARDLLPMYARLVAILDQ 933
BLAST of mRNA_H-canaliculatus_F_contig10189.210.1 vs. uniprot
Match: A0A835YRH9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 5.710e-10 Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 1 Query: 22 KFCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK 144 KFC NSKSAR+KLV ALF PRQ+LDLLP YARLVA LD+ Sbjct: 469 KFCHHNSKSARRKLVRALFEAPRQSLDLLPQYARLVATLDQ 509
BLAST of mRNA_H-canaliculatus_F_contig10189.210.1 vs. uniprot
Match: A0A1X2G7E1_9FUNG (ARM repeat-containing protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2G7E1_9FUNG) HSP 1 Score: 61.2 bits (147), Expect = 1.070e-9 Identity = 28/40 (70.00%), Postives = 35/40 (87.50%), Query Frame = 1 Query: 25 FCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK 144 FC+VNSK+ARK+LV ALF VPRQ +DLLP Y RL+AIL++ Sbjct: 515 FCYVNSKNARKRLVKALFGVPRQRVDLLPYYGRLIAILNQ 554
BLAST of mRNA_H-canaliculatus_F_contig10189.210.1 vs. uniprot
Match: A0A168QM14_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168QM14_ABSGL) HSP 1 Score: 60.5 bits (145), Expect = 2.000e-9 Identity = 26/40 (65.00%), Postives = 35/40 (87.50%), Query Frame = 1 Query: 25 FCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK 144 FC++NSK ARK+L+ AL N+PRQ +DLLP YARL+AIL++ Sbjct: 453 FCYMNSKGARKRLIKALLNIPRQRVDLLPYYARLIAILNQ 492
BLAST of mRNA_H-canaliculatus_F_contig10189.210.1 vs. uniprot
Match: A0A8H7EU12_9FUNG (Uncharacterized protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7EU12_9FUNG) HSP 1 Score: 60.5 bits (145), Expect = 2.000e-9 Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1 Query: 25 FCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILD 141 FC+VNSK+ARK+LV L NVPRQ LDLLP YARL+ IL+ Sbjct: 551 FCYVNSKAARKRLVKTLLNVPRQRLDLLPYYARLITILN 589
BLAST of mRNA_H-canaliculatus_F_contig10189.210.1 vs. uniprot
Match: A0A8H7S8T3_9FUNG (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S8T3_9FUNG) HSP 1 Score: 60.1 bits (144), Expect = 2.730e-9 Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 1 Query: 25 FCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK 144 FC++NSK+ARK+LV AL NVPRQ +DLLP Y+RL+AIL + Sbjct: 539 FCYMNSKNARKRLVKALLNVPRQRVDLLPYYSRLIAILSQ 578
BLAST of mRNA_H-canaliculatus_F_contig10189.210.1 vs. uniprot
Match: A0A162X8L0_PHYB8 (Uncharacterized protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162X8L0_PHYB8) HSP 1 Score: 59.3 bits (142), Expect = 5.100e-9 Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 1 Query: 1 LAPGEQKKFCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILD 141 L G +FC+VNSK+ARK+LV L VPRQ +DLLP YARL+A+L+ Sbjct: 489 LIDGAAVEFCYVNSKTARKRLVKTLLGVPRQRVDLLPYYARLIAVLN 535
BLAST of mRNA_H-canaliculatus_F_contig10189.210.1 vs. uniprot
Match: A0A1X2H9L6_SYNRA (Armadillo-type protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H9L6_SYNRA) HSP 1 Score: 59.3 bits (142), Expect = 5.100e-9 Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 1 Query: 25 FCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK 144 FC++NSK+ RK+LV AL NVPRQ +DLLP Y+RL+AIL + Sbjct: 538 FCYINSKATRKRLVKALLNVPRQRVDLLPYYSRLIAILSQ 577
BLAST of mRNA_H-canaliculatus_F_contig10189.210.1 vs. uniprot
Match: A0A077W9K0_9FUNG (MIF4G domain-containing protein n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077W9K0_9FUNG) HSP 1 Score: 58.9 bits (141), Expect = 6.970e-9 Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 1 Query: 25 FCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK 144 FC++NSK+ARK+LV AL +VPRQ +DLLP YAR +AIL + Sbjct: 549 FCYINSKAARKRLVKALLSVPRQRVDLLPYYARFIAILSR 588
BLAST of mRNA_H-canaliculatus_F_contig10189.210.1 vs. uniprot
Match: A0A068RE09_9FUNG (Nonsense-mediated mrna decay factor n=2 Tax=Lichtheimia corymbifera JMRC:FSU:9682 TaxID=1263082 RepID=A0A068RE09_9FUNG) HSP 1 Score: 58.9 bits (141), Expect = 6.980e-9 Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 1 Query: 25 FCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK 144 FC++NSK+ARK+LV AL +VPRQ +DLLP YAR +AIL + Sbjct: 558 FCYINSKAARKRLVKALLSVPRQRVDLLPYYARFIAILSR 597 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10189.210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10189.210.1 >prot_H-canaliculatus_F_contig10189.210.1 ID=prot_H-canaliculatus_F_contig10189.210.1|Name=mRNA_H-canaliculatus_F_contig10189.210.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=48bp LAPGEQKKFCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDKback to top mRNA from alignment at H-canaliculatus_F_contig10189:4602..4745+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10189.210.1 ID=mRNA_H-canaliculatus_F_contig10189.210.1|Name=mRNA_H-canaliculatus_F_contig10189.210.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=144bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10189:4602..4745+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10189:4602..4745+ >mRNA_H-canaliculatus_F_contig10189.210.1 ID=mRNA_H-canaliculatus_F_contig10189.210.1|Name=mRNA_H-canaliculatus_F_contig10189.210.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=288bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10189:4602..4745+ (Hapterophycus canaliculatus Oshoro5f female)back to top |