prot_H-canaliculatus_F_contig10189.209.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig10189.209.1
Unique Nameprot_H-canaliculatus_F_contig10189.209.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length93
Homology
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 4.420e-45
Identity = 84/93 (90.32%), Postives = 87/93 (93.55%), Query Frame = 0
Query:    1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQEEEEEGPGGISLWEGGVGGD 93
            GVFD+LCSHLERGHEQLGRLEKKMEKDRLTNG+LTEEKE+NLEESRK YE LLGNVTSLASSLNRDMP LPE E EEEG GGISLWEGGVGGD
Sbjct:  680 GVFDALCSHLERGHEQLGRLEKKMEKDRLTNGTLTEEKERNLEESRKGYEALLGNVTSLASSLNRDMPQLPEHEAEEEGSGGISLWEGGVGGD 772          
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: A0A835YRH9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.420e-19
Identity = 52/91 (57.14%), Postives = 63/91 (69.23%), Query Frame = 0
Query:    1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQEEEEEGPGGISLWEGGVG 91
            GV   L  HL   H+ L +LE++MEKDRL  GSLTEEKE+NLE S  AY  LL NV +L+ +L+ DMP LPE +EEEE  GG+ LW  GVG
Sbjct:  260 GVLRRLRGHLVTAHKALQKLERRMEKDRLLCGSLTEEKERNLELSAGAYNKLLSNVVALSDALDEDMPDLPEDKEEEE-LGGVELWSSGVG 349          
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: A0A7S1ZWS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZWS9_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.550e-10
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 0
Query:    1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQEEEEEGPGG------ISLW 86
            G + +L S     H +L +LEK+ E+D+L  GSL+E +EK L+++RK  ET+  +V +LA SLN+D+P L E+E    G GG      + LW
Sbjct:  312 GTYQTLSSTYLSTHTKLMKLEKRCEQDKLITGSLSEHREKGLQDARKLLETIQKSVETLAESLNQDVPKLEEEEXXGNGTGGDKDGIGLELW 403          
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: A0A7S4QUB8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QUB8_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.610e-10
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 0
Query:    1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQEEEEEGPGG------ISLW 86
            G + +L S     H +L +LEK+ E+D+L  GSL+E +EK L+++RK  ET+  +V +LA SLN+D+P L E+E    G GG      + LW
Sbjct:  361 GTYQTLSSTYLSTHTKLMKLEKRCEQDKLITGSLSEHREKGLQDARKLLETIQKSVETLAESLNQDVPKLEEEEXXGNGTGGDKDGIGLELW 452          
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: A0A8J2S5M1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S5M1_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 6.940e-9
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 0
Query:    6 LCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPL--PEQEEEEEGPGGISLW 86
            + S L   HE L  LE+K  +D L +GSLTEEKEK LE++RKA E L+  V++L  +L+ D P L   +  EEE+  G +SLW
Sbjct:  365 VSSKLLSDHEALRSLERKAARDALNHGSLTEEKEKALEDARKAREKLVKEVSALCDALDIDPPVLLDGDDSEEEDDKGELSLW 447          
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: A0A6V0BH58_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0BH58_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 8.260e-8
Identity = 34/87 (39.08%), Postives = 55/87 (63.22%), Query Frame = 0
Query:    1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLP-EQEEEEEGPGGISLW 86
            G ++ L   L +   +L ++EK+ E+DRL  GSLTE +EK L+++RK  ETL  +V +++  ++  +P L  E EEE EG  G+ +W
Sbjct:  486 GAYEFLSKSLVQTDTKLQKMEKRCEQDRLLAGSLTEAREKGLQDARKLRETLEKSVEAMSDIMDLPLPQLEKETEEETEGGTGVEVW 572          
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: A0A6V0BI57_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0BI57_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 8.370e-8
Identity = 34/87 (39.08%), Postives = 55/87 (63.22%), Query Frame = 0
Query:    1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLP-EQEEEEEGPGGISLW 86
            G ++ L   L +   +L ++EK+ E+DRL  GSLTE +EK L+++RK  ETL  +V +++  ++  +P L  E EEE EG  G+ +W
Sbjct:  486 GAYEFLSKSLVQTDTKLQKMEKRCEQDRLLAGSLTEAREKGLQDARKLRETLEKSVEAMSDIMDLPLPQLEKETEEETEGGTGVEVW 572          
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: A0A6U5Q234_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5Q234_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 4.010e-7
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 0
Query:    1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQE-EEEEGPG-GISLW 86
            G F +L   L   H +L +LEK+ E+DRL  GSLTE ++K L+++RK ++ L  +V  +   L+   P L E++ EEEE  G G+ +W
Sbjct:  396 GAFGTLSKSLVETHGKLRKLEKRCEQDRLLAGSLTEARQKGLDDARKLFDNLQKSVEVIGDLLDLKPPVLNEEDDEEEEAKGSGLEVW 483          
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: A0A1E7FX38_9STRA (ARM repeat-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FX38_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.020e-6
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 0
Query:    1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQEEEE-EGPGGISLW 86
            G +  L   L     +L ++EK+ E DRL  GSLTE +EK L+++RK  E+L  +V +++  L+  MP L + +EEE EG  G+ +W
Sbjct:  385 GAYGFLSKSLVNTDAKLQKMEKRCETDRLLAGSLTEAREKGLQDARKLRESLQKSVEAMSDILDLIMPHLEKNKEEETEGGTGVEVW 471          
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: K3XA48_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XA48_GLOUD)

HSP 1 Score: 53.5 bits (127), Expect = 3.510e-6
Identity = 26/86 (30.23%), Postives = 51/86 (59.30%), Query Frame = 0
Query:    3 FDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQEEEEEGPGGISLWEG 88
            ++ +C      H    +LE + E++    G +++   + LE ++  +E L  +V SLA +L+R++PPLP  ++++   GG+S+WEG
Sbjct:  294 YEMICKFYLAQHATFVKLEARNEREEANRGEVSDAHMQELENAKLLFEKLQTSVNSLADALDREVPPLPLNKDDDGNGGGLSVWEG 379          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LEF3_ECTSI4.420e-4590.32Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
A0A835YRH9_9STRA1.420e-1957.14Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A7S1ZWS9_9STRA1.550e-1041.30Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S4QUB8_9STRA1.610e-1041.30Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A8J2S5M1_9STRA6.940e-946.99Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6V0BH58_9STRA8.260e-839.08Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A6V0BI57_9STRA8.370e-839.08Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A6U5Q234_9STRA4.010e-739.77Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A1E7FX38_9STRA1.020e-639.08ARM repeat-containing protein n=1 Tax=Fragilariops... [more]
K3XA48_GLOUD3.510e-630.23Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 35..55
NoneNo IPR availablePANTHERPTHR12839:SF7REGULATOR OF NONSENSE TRANSCRIPTS 2coord: 3..78
IPR016021MIF4G-like domain superfamilyGENE3D1.25.40.180coord: 1..71
e-value: 7.0E-16
score: 60.4
IPR039762Nonsense-mediated mRNA decay protein Nmd2/UPF2PANTHERPTHR12839NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2coord: 3..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10189contigH-canaliculatus_F_contig10189:114..706 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10189.209.1mRNA_H-canaliculatus_F_contig10189.209.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig10189 114..706 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig10189.209.1 ID=prot_H-canaliculatus_F_contig10189.209.1|Name=mRNA_H-canaliculatus_F_contig10189.209.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=93bp
GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYE
TLLGNVTSLASSLNRDMPPLPEQEEEEEGPGGISLWEGGVGGD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039762Nmd2/UPF2
IPR016021MIF4-like_sf