mRNA_H-canaliculatus_F_contig10189.209.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI) HSP 1 Score: 164 bits (415), Expect = 4.420e-45 Identity = 84/93 (90.32%), Postives = 87/93 (93.55%), Query Frame = 1 Query: 1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQEEEEEGPGGISLWEGGVGGD 279
GVFD+LCSHLERGHEQLGRLEKKMEKDRLTNG+LTEEKE+NLEESRK YE LLGNVTSLASSLNRDMP LPE E EEEG GGISLWEGGVGGD
Sbjct: 680 GVFDALCSHLERGHEQLGRLEKKMEKDRLTNGTLTEEKERNLEESRKGYEALLGNVTSLASSLNRDMPQLPEHEAEEEGSGGISLWEGGVGGD 772
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: A0A835YRH9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 1.420e-19 Identity = 52/91 (57.14%), Postives = 63/91 (69.23%), Query Frame = 1 Query: 1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQEEEEEGPGGISLWEGGVG 273
GV L HL H+ L +LE++MEKDRL GSLTEEKE+NLE S AY LL NV +L+ +L+ DMP LPE +EEEE GG+ LW GVG
Sbjct: 260 GVLRRLRGHLVTAHKALQKLERRMEKDRLLCGSLTEEKERNLELSAGAYNKLLSNVVALSDALDEDMPDLPEDKEEEE-LGGVELWSSGVG 349
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: A0A7S1ZWS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZWS9_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 1.550e-10 Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 1 Query: 1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQEEEEEGPGG------ISLW 258
G + +L S H +L +LEK+ E+D+L GSL+E +EK L+++RK ET+ +V +LA SLN+D+P L E+E G GG + LW
Sbjct: 312 GTYQTLSSTYLSTHTKLMKLEKRCEQDKLITGSLSEHREKGLQDARKLLETIQKSVETLAESLNQDVPKLEEEEXXGNGTGGDKDGIGLELW 403
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: A0A7S4QUB8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QUB8_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 1.610e-10 Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 1 Query: 1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQEEEEEGPGG------ISLW 258
G + +L S H +L +LEK+ E+D+L GSL+E +EK L+++RK ET+ +V +LA SLN+D+P L E+E G GG + LW
Sbjct: 361 GTYQTLSSTYLSTHTKLMKLEKRCEQDKLITGSLSEHREKGLQDARKLLETIQKSVETLAESLNQDVPKLEEEEXXGNGTGGDKDGIGLELW 452
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: A0A8J2S5M1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S5M1_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 6.940e-9 Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 1 Query: 16 LCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPL--PEQEEEEEGPGGISLW 258
+ S L HE L LE+K +D L +GSLTEEKEK LE++RKA E L+ V++L +L+ D P L + EEE+ G +SLW
Sbjct: 365 VSSKLLSDHEALRSLERKAARDALNHGSLTEEKEKALEDARKAREKLVKEVSALCDALDIDPPVLLDGDDSEEEDDKGELSLW 447
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: A0A6V0BH58_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0BH58_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 8.260e-8 Identity = 34/87 (39.08%), Postives = 55/87 (63.22%), Query Frame = 1 Query: 1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLP-EQEEEEEGPGGISLW 258
G ++ L L + +L ++EK+ E+DRL GSLTE +EK L+++RK ETL +V +++ ++ +P L E EEE EG G+ +W
Sbjct: 486 GAYEFLSKSLVQTDTKLQKMEKRCEQDRLLAGSLTEAREKGLQDARKLRETLEKSVEAMSDIMDLPLPQLEKETEEETEGGTGVEVW 572
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: A0A6V0BI57_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0BI57_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 8.370e-8 Identity = 34/87 (39.08%), Postives = 55/87 (63.22%), Query Frame = 1 Query: 1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLP-EQEEEEEGPGGISLW 258
G ++ L L + +L ++EK+ E+DRL GSLTE +EK L+++RK ETL +V +++ ++ +P L E EEE EG G+ +W
Sbjct: 486 GAYEFLSKSLVQTDTKLQKMEKRCEQDRLLAGSLTEAREKGLQDARKLRETLEKSVEAMSDIMDLPLPQLEKETEEETEGGTGVEVW 572
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: A0A6U5Q234_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5Q234_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 4.010e-7 Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 1 Query: 1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQE-EEEEGPG-GISLW 258
G F +L L H +L +LEK+ E+DRL GSLTE ++K L+++RK ++ L +V + L+ P L E++ EEEE G G+ +W
Sbjct: 396 GAFGTLSKSLVETHGKLRKLEKRCEQDRLLAGSLTEARQKGLDDARKLFDNLQKSVEVIGDLLDLKPPVLNEEDDEEEEAKGSGLEVW 483
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: A0A1E7FX38_9STRA (ARM repeat-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FX38_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 1.020e-6 Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 1 Query: 1 GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQEEEE-EGPGGISLW 258
G + L L +L ++EK+ E DRL GSLTE +EK L+++RK E+L +V +++ L+ MP L + +EEE EG G+ +W
Sbjct: 385 GAYGFLSKSLVNTDAKLQKMEKRCETDRLLAGSLTEAREKGLQDARKLRESLQKSVEAMSDILDLIMPHLEKNKEEETEGGTGVEVW 471
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Match: K3XA48_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XA48_GLOUD) HSP 1 Score: 53.5 bits (127), Expect = 3.510e-6 Identity = 26/86 (30.23%), Postives = 51/86 (59.30%), Query Frame = 1 Query: 7 FDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYETLLGNVTSLASSLNRDMPPLPEQEEEEEGPGGISLWEG 264
++ +C H +LE + E++ G +++ + LE ++ +E L +V SLA +L+R++PPLP ++++ GG+S+WEG
Sbjct: 294 YEMICKFYLAQHATFVKLEARNEREEANRGEVSDAHMQELENAKLLFEKLQTSVNSLADALDREVPPLPLNKDDDGNGGGLSVWEG 379 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10189.209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 13 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10189.209.1 >prot_H-canaliculatus_F_contig10189.209.1 ID=prot_H-canaliculatus_F_contig10189.209.1|Name=mRNA_H-canaliculatus_F_contig10189.209.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=93bp GVFDSLCSHLERGHEQLGRLEKKMEKDRLTNGSLTEEKEKNLEESRKAYEback to top mRNA from alignment at H-canaliculatus_F_contig10189:114..706+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10189.209.1 ID=mRNA_H-canaliculatus_F_contig10189.209.1|Name=mRNA_H-canaliculatus_F_contig10189.209.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=593bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10189:114..706+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10189:114..706+ >mRNA_H-canaliculatus_F_contig10189.209.1 ID=mRNA_H-canaliculatus_F_contig10189.209.1|Name=mRNA_H-canaliculatus_F_contig10189.209.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=558bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10189:114..706+ (Hapterophycus canaliculatus Oshoro5f female)back to top |