|
|
Homology
BLAST of mRNA_H-canaliculatus_F_contig10188.208.1 vs. uniprot
Match: D7G160_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G160_ECTSI) HSP 1 Score: 143 bits (360), Expect = 3.940e-37 Identity = 72/110 (65.45%), Postives = 83/110 (75.45%), Query Frame = 2 Query: 2 RHGLHRDHRSAEHLGLAPEALECLTTALPLLNDKKRHNKETLLSFFQLCEEAVLGATDDCSGDEGSNRRTLGLARALLGGMLAHRRLAEVRTSNCRQRLERYVHEIDQLL 331
RH R+HR AEH L PE LECL ALPL+NDK H+K LLS FQLCEEAVL A+DDCS D +RTLGLA+A++ MLAH+RL EVRTS CR+RL+RYV EID LL
Sbjct: 87 RHKQDREHRGAEHFALVPEVLECLQIALPLINDKTLHDKAKLLSVFQLCEEAVLAASDDCSDDNDVCKRTLGLAKAVVVDMLAHKRLGEVRTSTCRERLDRYVQEIDDLL 196
BLAST of mRNA_H-canaliculatus_F_contig10188.208.1 vs. uniprot
Match: A0A6H5K7K2_9PHAE (NTP_transf_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K2_9PHAE) HSP 1 Score: 143 bits (360), Expect = 4.010e-37 Identity = 73/122 (59.84%), Postives = 87/122 (71.31%), Query Frame = 2 Query: 2 RHGLHRDHRSAEHLGLAPEALECLTTALPLLNDKKRHNKETLLSFFQLCEEAVLGATDDCSGDEGSNRRTLGLARALLGGMLAHRRLAEVRTSNCRQRLERYVHEIDQLLAECARVQRHCPG 367
RH R+HR AEH+ L PE LECL ALPL+N+K+ H+K LLS FQLCEEAVL A+DDCS D RTLGLA+A++ MLAH+RL EVRTS CR+RL+RYV EID LL + H G
Sbjct: 91 RHKQDREHRGAEHVALVPEVLECLQIALPLINEKRLHDKAKLLSVFQLCEEAVLAASDDCSDDNDVCTRTLGLAKAVVVDMLAHKRLGEVRTSTCRERLDRYVQEIDDLLWRLDEMLTHSTG 212
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 375 |
| Cds size | 375 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928647.1632195-CDS-H-canaliculatus_F_contig10188:1375..1473 | 1622928647.1632195-CDS-H-canaliculatus_F_contig10188:1375..1473 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10188 1376..1473 + |
| 1696845511.9436555-CDS-H-canaliculatus_F_contig10188:1375..1473 | 1696845511.9436555-CDS-H-canaliculatus_F_contig10188:1375..1473 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10188 1376..1473 + |
| 1622928647.1775405-CDS-H-canaliculatus_F_contig10188:1982..2152 | 1622928647.1775405-CDS-H-canaliculatus_F_contig10188:1982..2152 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10188 1983..2152 + |
| 1696845511.958341-CDS-H-canaliculatus_F_contig10188:1982..2152 | 1696845511.958341-CDS-H-canaliculatus_F_contig10188:1982..2152 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10188 1983..2152 + |
| 1622928647.1938818-CDS-H-canaliculatus_F_contig10188:2656..2763 | 1622928647.1938818-CDS-H-canaliculatus_F_contig10188:2656..2763 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10188 2657..2763 + |
| 1696845511.973488-CDS-H-canaliculatus_F_contig10188:2656..2763 | 1696845511.973488-CDS-H-canaliculatus_F_contig10188:2656..2763 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10188 2657..2763 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10188.208.1 >prot_H-canaliculatus_F_contig10188.208.1 ID=prot_H-canaliculatus_F_contig10188.208.1|Name=mRNA_H-canaliculatus_F_contig10188.208.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=125bp
AARLAPRSPERRAPWACPGGAGVPHNRAPTVERQETPQQGDAPIFFSALR
GSGIGGDRRLQRRRRQQQEDAGTRKGSARRHAGAPPSGRGADVELSATAR
TLRARDRPTACGVCARTTPLSRATG back to topmRNA from alignment at H-canaliculatus_F_contig10188:1376..2763+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10188.208.1 ID=mRNA_H-canaliculatus_F_contig10188.208.1|Name=mRNA_H-canaliculatus_F_contig10188.208.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1388bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10188:1376..2763+ (Hapterophycus canaliculatus Oshoro5f female)
GCGGCACGGCTTGCACCGAGATCACCGGAGCGCCGAGCACCTTGGGCTTG
CCCCGGAGGCGCTGGAGTGCCTCACAACCGCGCTCCCACTGTTGAACGGT
GAGCCAAGTACGCCAGTCGGTGCAACAGCAGCAGTAGCTCCTGGTTGCTC
CAAGCGGGTGCATGTTGCCAGCATGGGACACGTTGTGACGCCGCGGTGGT
CACATCCCTCGAGCGTTCTACGCTCGATTTTTTTCCCGTACTGTCTCCGC
CGCGCCCCTACCCCGGGTCTTTGGTTCGTTTGTCGTTTATTTCGCCAATC
TGTGAACAATTGGGAACGCTTGCTTCCGTTGTATCGTGATGGCTCACCTT
TGGGCGGAAGCGCTATCTGCATGCCCCCCGGCTCCGCGTTCGCAGATTGG
TTCTGCTTGGACGTGGGCCATCAACGCTCCAACACGCCTGTACCGCACGC
TACACTTCATGCTGCCAAGGGGACAAAAACGGCAATTTCAATAGCAAAGT
CTCCAACAGTAGATATGGCCCTGCGACAAAGCGAGGGTTGCCCGCCCCGA
ACCCCCCCCTGGCTACCGCGCCTTATTTCGCTTCTTCTCTCCCCGCTCTC
CCGTCAGACAAGAAACGCCACAACAAGGAGACGCTCCTATCTTTTTTTCA
GCTCTGCGAGGAAGCGGTATTGGGGGCGACAGACGACTGCAGCGGCGACG
AAGGCAGCAACAGGAGGACGCTGGGACTCGCAAGGGCTCTGCTCGGAGGC
ATGCTGGCGCACCGCCGTCTGGCAGAGGTAAGAGTTGGGTACCCGGTCGG
ATGGCTACAGCGATCGATCGCAAAGTCCTTGCGTGGTTGGGGCTGGCCCG
GGTGAGTAAGCTTCGCACGGCAAGGCAGGAGTAAAGAACGTTCATTGGAA
AGCGGGGGGGCGTGGATGTTCCAAGGGAAGGGTACGATCCTGAAAAGTTG
TGTCCGTGAGAGGTAAACATGAGATGAACGCAGCGGGGTGGTACGAGCAT
CTTGGGTGAGACTTCAGCGGGTAGGTTCGTTCCAAGGGCGGGCTTGTCTA
CCGCTTCTGCCGTCGGCCAACCAAGCCAAGAGGCTGAGCCGCGGTCGGGT
TGGGGTTGCTCCTTGCCGACATCAGCACGCCGTTCTCTTTAACAAACGAT
CATCCAATGATTCTCTACCTTGGGTCTCTGGACTGCTGCCACAAAAAAGT
GACCGACACCCACACTAAGAGCTTACCCGACCCCATCCGTCTATCGACCC
ATTGCTTGTGCACCCTTGTCCTCCTCCACAGGTGCGGACGTCGAACTGTC
GGCAACGGCTAGAACGTTACGTGCACGAGATAGACCAACTGCTTGCGGAG
TGTGCGCGCGTACAACGCCACTGTCCCGGGCAACAGGC back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10188:1376..2763+ >mRNA_H-canaliculatus_F_contig10188.208.1 ID=mRNA_H-canaliculatus_F_contig10188.208.1|Name=mRNA_H-canaliculatus_F_contig10188.208.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=750bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10188:1376..2763+ (Hapterophycus canaliculatus Oshoro5f female)
GCGGCACGGCTTGCACCGAGATCACCGGAGCGCCGAGCACCTTGGGCTTG
CCCCGGAGGCGCTGGAGTGCCTCACAACCGCGCTCCCACTGTTGAACGGC
GGCACGGCTTGCACCGAGATCACCGGAGCGCCGAGCACCTTGGGCTTGCC
CCGGAGGCGCTGGAGTGCCTCACAACCGCGCTCCCACTGTTGAACGACAA
GAAACGCCACAACAAGGAGACGCTCCTATCTTTTTTTCAGCTCTGCGAGG
AAGCGGTATTGGGGGCGACAGACGACTGCAGCGGCGACGAAGGCAGCAAC
AGGAGGACGCTGGGACTCGCAAGGGCTCTGCTCGGAGGCATGCTGGCGCA
CCGCCGTCTGGCAGAGACAAGAAACGCCACAACAAGGAGACGCTCCTATC
TTTTTTTCAGCTCTGCGAGGAAGCGGTATTGGGGGCGACAGACGACTGCA
GCGGCGACGAAGGCAGCAACAGGAGGACGCTGGGACTCGCAAGGGCTCTG
CTCGGAGGCATGCTGGCGCACCGCCGTCTGGCAGAGGTGCGGACGTCGAA
CTGTCGGCAACGGCTAGAACGTTACGTGCACGAGATAGACCAACTGCTTG
CGGAGTGTGCGCGCGTACAACGCCACTGTCCCGGGCAACAGGCGTGCGGA
CGTCGAACTGTCGGCAACGGCTAGAACGTTACGTGCACGAGATAGACCAA
CTGCTTGCGGAGTGTGCGCGCGTACAACGCCACTGTCCCGGGCAACAGGC back to top
|