mRNA_H-canaliculatus_F_contig10188.208.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10188.208.1
Unique NamemRNA_H-canaliculatus_F_contig10188.208.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10188.208.1 vs. uniprot
Match: D7G160_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G160_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 3.940e-37
Identity = 72/110 (65.45%), Postives = 83/110 (75.45%), Query Frame = 2 
Query:    2 RHGLHRDHRSAEHLGLAPEALECLTTALPLLNDKKRHNKETLLSFFQLCEEAVLGATDDCSGDEGSNRRTLGLARALLGGMLAHRRLAEVRTSNCRQRLERYVHEIDQLL 331
            RH   R+HR AEH  L PE LECL  ALPL+NDK  H+K  LLS FQLCEEAVL A+DDCS D    +RTLGLA+A++  MLAH+RL EVRTS CR+RL+RYV EID LL
Sbjct:   87 RHKQDREHRGAEHFALVPEVLECLQIALPLINDKTLHDKAKLLSVFQLCEEAVLAASDDCSDDNDVCKRTLGLAKAVVVDMLAHKRLGEVRTSTCRERLDRYVQEIDDLL 196
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BLAST of mRNA_H-canaliculatus_F_contig10188.208.1 vs. uniprot
Match: A0A6H5K7K2_9PHAE (NTP_transf_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K2_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 4.010e-37
Identity = 73/122 (59.84%), Postives = 87/122 (71.31%), Query Frame = 2 
Query:    2 RHGLHRDHRSAEHLGLAPEALECLTTALPLLNDKKRHNKETLLSFFQLCEEAVLGATDDCSGDEGSNRRTLGLARALLGGMLAHRRLAEVRTSNCRQRLERYVHEIDQLLAECARVQRHCPG 367
            RH   R+HR AEH+ L PE LECL  ALPL+N+K+ H+K  LLS FQLCEEAVL A+DDCS D     RTLGLA+A++  MLAH+RL EVRTS CR+RL+RYV EID LL     +  H  G
Sbjct:   91 RHKQDREHRGAEHVALVPEVLECLQIALPLINEKRLHDKAKLLSVFQLCEEAVLAASDDCSDDNDVCTRTLGLAKAVVVDMLAHKRLGEVRTSTCRERLDRYVQEIDDLLWRLDEMLTHSTG 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10188.208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G160_ECTSI3.940e-3765.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7K2_9PHAE4.010e-3759.84NTP_transf_2 domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10188contigH-canaliculatus_F_contig10188:1376..2763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size375
Cds size375
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10188.208.1prot_H-canaliculatus_F_contig10188.208.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10188 1376..2763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928647.1632195-CDS-H-canaliculatus_F_contig10188:1375..14731622928647.1632195-CDS-H-canaliculatus_F_contig10188:1375..1473Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10188 1376..1473 +
1696845511.9436555-CDS-H-canaliculatus_F_contig10188:1375..14731696845511.9436555-CDS-H-canaliculatus_F_contig10188:1375..1473Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10188 1376..1473 +
1622928647.1775405-CDS-H-canaliculatus_F_contig10188:1982..21521622928647.1775405-CDS-H-canaliculatus_F_contig10188:1982..2152Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10188 1983..2152 +
1696845511.958341-CDS-H-canaliculatus_F_contig10188:1982..21521696845511.958341-CDS-H-canaliculatus_F_contig10188:1982..2152Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10188 1983..2152 +
1622928647.1938818-CDS-H-canaliculatus_F_contig10188:2656..27631622928647.1938818-CDS-H-canaliculatus_F_contig10188:2656..2763Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10188 2657..2763 +
1696845511.973488-CDS-H-canaliculatus_F_contig10188:2656..27631696845511.973488-CDS-H-canaliculatus_F_contig10188:2656..2763Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10188 2657..2763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10188.208.1

>prot_H-canaliculatus_F_contig10188.208.1 ID=prot_H-canaliculatus_F_contig10188.208.1|Name=mRNA_H-canaliculatus_F_contig10188.208.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=125bp
AARLAPRSPERRAPWACPGGAGVPHNRAPTVERQETPQQGDAPIFFSALR
GSGIGGDRRLQRRRRQQQEDAGTRKGSARRHAGAPPSGRGADVELSATAR
TLRARDRPTACGVCARTTPLSRATG
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mRNA from alignment at H-canaliculatus_F_contig10188:1376..2763+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10188.208.1 ID=mRNA_H-canaliculatus_F_contig10188.208.1|Name=mRNA_H-canaliculatus_F_contig10188.208.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1388bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10188:1376..2763+ (Hapterophycus canaliculatus Oshoro5f female)
GCGGCACGGCTTGCACCGAGATCACCGGAGCGCCGAGCACCTTGGGCTTG
CCCCGGAGGCGCTGGAGTGCCTCACAACCGCGCTCCCACTGTTGAACGGT
GAGCCAAGTACGCCAGTCGGTGCAACAGCAGCAGTAGCTCCTGGTTGCTC
CAAGCGGGTGCATGTTGCCAGCATGGGACACGTTGTGACGCCGCGGTGGT
CACATCCCTCGAGCGTTCTACGCTCGATTTTTTTCCCGTACTGTCTCCGC
CGCGCCCCTACCCCGGGTCTTTGGTTCGTTTGTCGTTTATTTCGCCAATC
TGTGAACAATTGGGAACGCTTGCTTCCGTTGTATCGTGATGGCTCACCTT
TGGGCGGAAGCGCTATCTGCATGCCCCCCGGCTCCGCGTTCGCAGATTGG
TTCTGCTTGGACGTGGGCCATCAACGCTCCAACACGCCTGTACCGCACGC
TACACTTCATGCTGCCAAGGGGACAAAAACGGCAATTTCAATAGCAAAGT
CTCCAACAGTAGATATGGCCCTGCGACAAAGCGAGGGTTGCCCGCCCCGA
ACCCCCCCCTGGCTACCGCGCCTTATTTCGCTTCTTCTCTCCCCGCTCTC
CCGTCAGACAAGAAACGCCACAACAAGGAGACGCTCCTATCTTTTTTTCA
GCTCTGCGAGGAAGCGGTATTGGGGGCGACAGACGACTGCAGCGGCGACG
AAGGCAGCAACAGGAGGACGCTGGGACTCGCAAGGGCTCTGCTCGGAGGC
ATGCTGGCGCACCGCCGTCTGGCAGAGGTAAGAGTTGGGTACCCGGTCGG
ATGGCTACAGCGATCGATCGCAAAGTCCTTGCGTGGTTGGGGCTGGCCCG
GGTGAGTAAGCTTCGCACGGCAAGGCAGGAGTAAAGAACGTTCATTGGAA
AGCGGGGGGGCGTGGATGTTCCAAGGGAAGGGTACGATCCTGAAAAGTTG
TGTCCGTGAGAGGTAAACATGAGATGAACGCAGCGGGGTGGTACGAGCAT
CTTGGGTGAGACTTCAGCGGGTAGGTTCGTTCCAAGGGCGGGCTTGTCTA
CCGCTTCTGCCGTCGGCCAACCAAGCCAAGAGGCTGAGCCGCGGTCGGGT
TGGGGTTGCTCCTTGCCGACATCAGCACGCCGTTCTCTTTAACAAACGAT
CATCCAATGATTCTCTACCTTGGGTCTCTGGACTGCTGCCACAAAAAAGT
GACCGACACCCACACTAAGAGCTTACCCGACCCCATCCGTCTATCGACCC
ATTGCTTGTGCACCCTTGTCCTCCTCCACAGGTGCGGACGTCGAACTGTC
GGCAACGGCTAGAACGTTACGTGCACGAGATAGACCAACTGCTTGCGGAG
TGTGCGCGCGTACAACGCCACTGTCCCGGGCAACAGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10188:1376..2763+

>mRNA_H-canaliculatus_F_contig10188.208.1 ID=mRNA_H-canaliculatus_F_contig10188.208.1|Name=mRNA_H-canaliculatus_F_contig10188.208.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=750bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10188:1376..2763+ (Hapterophycus canaliculatus Oshoro5f female)
GCGGCACGGCTTGCACCGAGATCACCGGAGCGCCGAGCACCTTGGGCTTG
CCCCGGAGGCGCTGGAGTGCCTCACAACCGCGCTCCCACTGTTGAACGGC
GGCACGGCTTGCACCGAGATCACCGGAGCGCCGAGCACCTTGGGCTTGCC
CCGGAGGCGCTGGAGTGCCTCACAACCGCGCTCCCACTGTTGAACGACAA
GAAACGCCACAACAAGGAGACGCTCCTATCTTTTTTTCAGCTCTGCGAGG
AAGCGGTATTGGGGGCGACAGACGACTGCAGCGGCGACGAAGGCAGCAAC
AGGAGGACGCTGGGACTCGCAAGGGCTCTGCTCGGAGGCATGCTGGCGCA
CCGCCGTCTGGCAGAGACAAGAAACGCCACAACAAGGAGACGCTCCTATC
TTTTTTTCAGCTCTGCGAGGAAGCGGTATTGGGGGCGACAGACGACTGCA
GCGGCGACGAAGGCAGCAACAGGAGGACGCTGGGACTCGCAAGGGCTCTG
CTCGGAGGCATGCTGGCGCACCGCCGTCTGGCAGAGGTGCGGACGTCGAA
CTGTCGGCAACGGCTAGAACGTTACGTGCACGAGATAGACCAACTGCTTG
CGGAGTGTGCGCGCGTACAACGCCACTGTCCCGGGCAACAGGCGTGCGGA
CGTCGAACTGTCGGCAACGGCTAGAACGTTACGTGCACGAGATAGACCAA
CTGCTTGCGGAGTGTGCGCGCGTACAACGCCACTGTCCCGGGCAACAGGC
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