mRNA_H-canaliculatus_F_contig12415.2050.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12415.2050.1
Unique NamemRNA_H-canaliculatus_F_contig12415.2050.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12415.2050.1 vs. uniprot
Match: D7G664_ECTSI (Eukaryotic initiation factor 4G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G664_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.060e-24
Identity = 60/114 (52.63%), Postives = 77/114 (67.54%), Query Frame = 1
Query:    1 KKRMLGNIQFIGELYKKRLLNESVTKECLETLLNVETIMASYRTL---------------------IRTIGPTLDTARNTLYMRELFRLMADIAGNERVCNRIRFMLQDLAELR 279
            K+RMLGNIQFIGELYKK +L E+V K C+E LLN +  +A+ RTL                     IRTIG TLDT++NTLYM+E+FRLM  IA N+ + +R+RFM++DL ELR
Sbjct:   21 KRRMLGNIQFIGELYKKSMLKENVMKTCVEQLLNAKKEVATDRTLKALKFKNMDVDEDNLEALGKLIRTIGSTLDTSKNTLYMKEIFRLMDKIANNKSINSRMRFMIRDLEELR 134          
BLAST of mRNA_H-canaliculatus_F_contig12415.2050.1 vs. uniprot
Match: A0A6H5KBU9_9PHAE (MI domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU9_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.410e-23
Identity = 59/114 (51.75%), Postives = 75/114 (65.79%), Query Frame = 1
Query:    1 KKRMLGNIQFIGELYKKRLLNESVTKECLETLLNVETIMASYRTL---------------------IRTIGPTLDTARNTLYMRELFRLMADIAGNERVCNRIRFMLQDLAELR 279
            K+RMLGNIQFIGELYKK +L E+V K C+E LLN +  + + RTL                     IRTIG TLDT++NTLYM E+FRLM  IA N+ + +R+RFM++DL ELR
Sbjct:  577 KRRMLGNIQFIGELYKKSMLKENVMKTCVEHLLNAKKEVGADRTLKALKFKNGDVDEDNLEALGKLIRTIGSTLDTSKNTLYMTEIFRLMDKIANNKSINSRMRFMIRDLEELR 690          
BLAST of mRNA_H-canaliculatus_F_contig12415.2050.1 vs. uniprot
Match: A0A7S3WM56_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WM56_EMIHU)

HSP 1 Score: 75.9 bits (185), Expect = 3.740e-14
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 KKRMLGNIQFIGELYKKRLLNESVTKECLETLLNV-----ETIMASYRTLIRTIGPTLDTARNTLYMRELFRLMADIAGNERVCNRIRFMLQDLAELRVSG 288
            KKRMLGNI+FIGELYK+++L E +  ECL  LL       E  +     L+ TIG  +D AR   ++ E F  M  +A NE++  R+RFMLQ++ +LR  G
Sbjct:  208 KKRMLGNIRFIGELYKQKMLTEKIMHECLIKLLGDIEKPDEDEVECLCKLMTTIGSLIDHARAKSHLDEYFTRMKSMANNEKLAIRMRFMLQEVIDLRRGG 308          
BLAST of mRNA_H-canaliculatus_F_contig12415.2050.1 vs. uniprot
Match: A0A7S3WKT2_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WKT2_EMIHU)

HSP 1 Score: 74.3 bits (181), Expect = 1.640e-13
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 KKRMLGNIQFIGELYKKRLLNESVTKECLETLLNV-----ETIMASYRTLIRTIGPTLDTARNTLYMRELFRLMADIAGNERVCNRIRFMLQDLAELRVSG 288
            KKRMLGNI+FIGELYK+++L E +  ECL  LL       E  +     L+ TIG  +D AR   ++ E F  M  +A NE++  R+RFML+++ +LR  G
Sbjct:  154 KKRMLGNIRFIGELYKQKMLTEKIMHECLIKLLGDIEKPDEDEVECLCKLMTTIGSLIDHARAKSHLDEYFTRMKSMANNEKLAIRMRFMLREVIDLRRDG 254          
BLAST of mRNA_H-canaliculatus_F_contig12415.2050.1 vs. uniprot
Match: A0A7S0Q669_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q669_9EUKA)

HSP 1 Score: 73.6 bits (179), Expect = 1.770e-13
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 1
Query:    1 KKRMLGNIQFIGELYKKRLLNESVTKECLETLLN-----VETIMASYRTLIRTIGPTLDTARNTLYMRELFRLMADIAGNERVCNRIRFMLQDLAELR 279
            K+RMLGNI+FIGELYK+R+L E +  ECL  LL       E  +     L+ TIG  +D  +   +M E F  M +++ N  + NR+RFMLQ++ +LR
Sbjct:  182 KRRMLGNIRFIGELYKQRMLTEKIMHECLIKLLGDIEQPEEEAVECLCKLMTTIGKDIDHPKAKSHMDEYFTRMKEMSSNPNLVNRLRFMLQEVIDLR 279          
BLAST of mRNA_H-canaliculatus_F_contig12415.2050.1 vs. uniprot
Match: A0A388KJ91_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KJ91_CHABU)

HSP 1 Score: 74.3 bits (181), Expect = 1.990e-13
Identity = 42/101 (41.58%), Postives = 65/101 (64.36%), Query Frame = 1
Query:    1 KKRMLGNIQFIGELYKKRLLNESVTKECLETLL-----NVETIMASYRTLIRTIGPTLDTARNTLYMRELFRLMADIAGNERVCNRIRFMLQDLAELRVSG 288
            ++RMLGNI+FIGEL+KK++L E +  EC++ LL     + E  + S   L+ TIG TLD  +   +M   F+ M  +  N+++ +RIRFM+ D+ ELR +G
Sbjct: 3357 RRRMLGNIRFIGELFKKQMLTEKIMHECIKKLLGDIENSEEEDIESLCKLLTTIGHTLDHPKAHQHMDSYFKRMERLTTNQKLSSRIRFMVLDVIELRDNG 3457          
BLAST of mRNA_H-canaliculatus_F_contig12415.2050.1 vs. uniprot
Match: A0A7J8QS48_GOSRA (MI domain-containing protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J8QS48_GOSRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.460e-13
Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = 1
Query:    1 KKRMLGNIQFIGELYKKRLLNESVTKECLETLL------NVETIMASYRTLIRTIGPTLDTARNTLYMRELFRLMADIAGNERVCNRIRFMLQDLAELR 279
            ++RMLGNI+FIGELYKK++L E +  EC++ LL      + E I A  + L+ TIG  +D  +  +YM   F  MA ++ N ++ +R+RFML+D  +LR
Sbjct:   46 RRRMLGNIRFIGELYKKKMLTERIMHECIKKLLGEYENPDEEDIEALCK-LMSTIGEMIDYPKAKVYMDAYFERMAKLSNNVKLSSRVRFMLKDAIDLR 143          
BLAST of mRNA_H-canaliculatus_F_contig12415.2050.1 vs. uniprot
Match: A0A397I5M8_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397I5M8_9GLOM)

HSP 1 Score: 73.6 bits (179), Expect = 3.590e-13
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 1
Query:    1 KKRMLGNIQFIGELYKKRLLNESVTKECLETLLNV--------ETIMASYRTLIRTIGPTLDTARNTLYMRELFRLMADIAGNERVCNRIRFMLQDLAELR 279
            K+R LG I+FIGEL+K  ++ E +  EC++ LL V        E  + S  TL+ TIG  LD  +   +M   F  M DI+ N ++ NRIRFMLQD+ ELR
Sbjct:  469 KRRGLGLIRFIGELFKLNMITERIIHECIKKLLTVSSNHETPEEEEIESLCTLLNTIGQQLDHNKAKTHMDAYFNQMGDISRNPKISNRIRFMLQDVIELR 569          
BLAST of mRNA_H-canaliculatus_F_contig12415.2050.1 vs. uniprot
Match: A0A6A2XE16_HIBSY (Eukaryotic translation initiation factor 4G n=3 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2XE16_HIBSY)

HSP 1 Score: 73.6 bits (179), Expect = 3.650e-13
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 1
Query:    1 KKRMLGNIQFIGELYKKRLLNESVTKECLETLLNV-----ETIMASYRTLIRTIGPTLDTARNTLYMRELFRLMADIAGNERVCNRIRFMLQDLAELR 279
            ++RMLGNI+ IGELYKK++L E +  EC++ LL       E  + +   L+ TIG  +D  +   YM   F +MA +A N ++ +R+RFML+D  +LR
Sbjct: 1301 RRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGEYENPDEEDVEALCKLMSTIGEMIDHPKAKAYMDNYFEMMAKLANNMKLSSRVRFMLKDAIDLR 1398          
BLAST of mRNA_H-canaliculatus_F_contig12415.2050.1 vs. uniprot
Match: A0A7S4BQ61_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BQ61_CHRCT)

HSP 1 Score: 73.2 bits (178), Expect = 3.940e-13
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 KKRMLGNIQFIGELYKKRLLNESVTKECLETLLN-----VETIMASYRTLIRTIGPTLDTARNTLYMRELFRLMADIAGNERVCNRIRFMLQDLAELRVSG 288
            K+RMLGNI+FIGELYK+++L E +  ECL  LL       E  +     L+ TIG ++D  +   +M E F  M +++ N  + NR+RFMLQ++ +LR  G
Sbjct:  232 KRRMLGNIRFIGELYKQKMLAEKIMHECLIKLLGDIEHPEEESVECLCKLMTTIGQSIDHEKARSHMDEYFTRMKELSTNPALANRLRFMLQEVIDLRRGG 332          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12415.2050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G664_ECTSI1.060e-2452.63Eukaryotic initiation factor 4G n=1 Tax=Ectocarpus... [more]
A0A6H5KBU9_9PHAE1.410e-2351.75MI domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S3WM56_EMIHU3.740e-1444.55Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7S3WKT2_EMIHU1.640e-1343.56Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7S0Q669_9EUKA1.770e-1342.86Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A388KJ91_CHABU1.990e-1341.58Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A7J8QS48_GOSRA3.460e-1342.42MI domain-containing protein n=2 Tax=Gossypium Tax... [more]
A0A397I5M8_9GLOM3.590e-1343.56Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
A0A6A2XE16_HIBSY3.650e-1340.82Eukaryotic translation initiation factor 4G n=3 Ta... [more]
A0A7S4BQ61_CHRCT3.940e-1341.58Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12415contigH-canaliculatus_F_contig12415:799..1751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue3.9e-20
Seed eggNOG ortholog2880.D7G664
KEGG koko:K03260
KEGG Pathwayko03013,ko05416,map03013,map05416
KEGG ModuleM00428
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016281,GO:0032991,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.translation initiation factor activity
EggNOG OGsKOG0401@1,KOG0401@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12415.2050.1prot_H-canaliculatus_F_contig12415.2050.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12415 799..1742 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928956.8830643-CDS-H-canaliculatus_F_contig12415:798..9551622928956.8830643-CDS-H-canaliculatus_F_contig12415:798..955Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12415 799..955 -
1696845629.182229-CDS-H-canaliculatus_F_contig12415:798..9551696845629.182229-CDS-H-canaliculatus_F_contig12415:798..955Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12415 799..955 -
1622928956.915006-CDS-H-canaliculatus_F_contig12415:1620..17421622928956.915006-CDS-H-canaliculatus_F_contig12415:1620..1742Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12415 1621..1742 -
1696845629.2010446-CDS-H-canaliculatus_F_contig12415:1620..17421696845629.2010446-CDS-H-canaliculatus_F_contig12415:1620..1742Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12415 1621..1742 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928956.9321542-UTR-H-canaliculatus_F_contig12415:1742..17511622928956.9321542-UTR-H-canaliculatus_F_contig12415:1742..1751Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12415 1743..1751 -
1696845629.2144384-UTR-H-canaliculatus_F_contig12415:1742..17511696845629.2144384-UTR-H-canaliculatus_F_contig12415:1742..1751Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12415 1743..1751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12415.2050.1

>prot_H-canaliculatus_F_contig12415.2050.1 ID=prot_H-canaliculatus_F_contig12415.2050.1|Name=mRNA_H-canaliculatus_F_contig12415.2050.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=93bp
MLGNIQFIGELYKKRLLNESVTKECLETLLNVETIMASYRTLIRTIGPTL
DTARNTLYMRELFRLMADIAGNERVCNRIRFMLQDLAELRVSG
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mRNA from alignment at H-canaliculatus_F_contig12415:799..1751-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12415.2050.1 ID=mRNA_H-canaliculatus_F_contig12415.2050.1|Name=mRNA_H-canaliculatus_F_contig12415.2050.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=953bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12415:799..1751- (Hapterophycus canaliculatus Oshoro5f female)
AAGAAGCGCATGCTGGGAAACATCCAGTTCATCGGGGAGCTCTATAAGAA GAGGCTGCTCAACGAGAGCGTGACCAAGGAATGCCTAGAGACACTCCTGA ACGTCGAAACGATAATGGCCTCATATAGGACGTTCGAGGCGTTGAGGTTC ATCTCGAGAGACGTGGACGAGGAGAGGCTTGAGGTGTGTGTGCTGAGTAC GGCGGTCAGGGGCGGTTGGCTGTCTTGAGTGTTTGCAATGCTAATGCAGC TTTGCGCTGGTTCCTATTTGGTTGAATTCACGCCTCGAATCTTTTTCCGA TCAAGGTTGTCGTTGTCGTTGCCGTTGCTGTTGTTCATTGGTTCGTTCGT TCGTTCTTCTTCTTCCTGGTGCTGTTGCAAGTGTTGGCGCTGGTGGCGCA GCTGCAGTTGACGTCTGATTGGTCGTGCCGTTGTAGGTGTTGATGCTCTT GTCGTTGTCGCTACCGTTGTTGTTTTCACTCTTCTGCGCTGCGAATGGCG TTGCAGCCGTTTCAGTAGGGATGAACCATCGCATTTCTATGTTGACTTAT CATAATTAATAACTAGAGCCGCTTCTCCTCGCAACGCACGCAAGCCTCTT CTTGTTCGCGCATGTTTCAACGCATTTGGCTGCTGTTCCATGAAGAAAGC ACGTTTTCTCTACTTTCCACGTCGCCTGTTCCTCCTCGGCATCTTGTCCT TGTTGGTGCGGCCGAAAACAGGAGAACACACGAAAAACACATGATATCGG TGTGTTGCCCCCCGCCCGCCCCCTCGCATTTTCAGGCTTTTGGCAGGCTG ATCCGAACGATCGGGCCAACGCTGGACACCGCCAGGAACACCCTCTACAT GAGGGAGCTCTTTCGCCTCATGGCCGATATCGCCGGGAATGAGAGGGTTT GCAACCGCATCAGGTTCATGCTGCAGGACCTCGCTGAGCTGCGGGTGAGT GGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12415:799..1751-

>mRNA_H-canaliculatus_F_contig12415.2050.1 ID=mRNA_H-canaliculatus_F_contig12415.2050.1|Name=mRNA_H-canaliculatus_F_contig12415.2050.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=558bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12415:799..1751- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGGGAAACATCCAGTTCATCGGGGAGCTCTATAAGAAGAGGCTGCT
CAACGAGAGCGTGACCAAGGAATGCCTAGAGACACTCCTGAACGTCGAAA
CGATAATGGCCTCATATAGGACATGCTGGGAAACATCCAGTTCATCGGGG
AGCTCTATAAGAAGAGGCTGCTCAACGAGAGCGTGACCAAGGAATGCCTA
GAGACACTCCTGAACGTCGAAACGATAATGGCCTCATATAGGACGCTGAT
CCGAACGATCGGGCCAACGCTGGACACCGCCAGGAACACCCTCTACATGA
GGGAGCTCTTTCGCCTCATGGCCGATATCGCCGGGAATGAGAGGGTTTGC
AACCGCATCAGGTTCATGCTGCAGGACCTCGCTGAGCTGCGGGTGAGTGG
AGCTGATCCGAACGATCGGGCCAACGCTGGACACCGCCAGGAACACCCTC
TACATGAGGGAGCTCTTTCGCCTCATGGCCGATATCGCCGGGAATGAGAG
GGTTTGCAACCGCATCAGGTTCATGCTGCAGGACCTCGCTGAGCTGCGGG
TGAGTGGA
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