mRNA_H-canaliculatus_F_contig124.2034.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig124.2034.1
Unique NamemRNA_H-canaliculatus_F_contig124.2034.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig124.2034.1 vs. uniprot
Match: A0A6H5K3S5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K3S5_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 1.100e-73
Identity = 129/204 (63.24%), Postives = 143/204 (70.10%), Query Frame = 2 
Query:  488 MMRAVETLRQRLPGAVGATLGYSPVQASDSEDEIDDNDGGRGEFELSRG-YAGDRFNNRDGRRPRRRAGSGGTVSAAGARAGEGVGQEEND-MLWPPYTPLYTNMKVLRRKRLDASMMYSRAGPCTKVCFVLSLWGVFFLSWVGSTLASGSPYIIPEASEETNLAWSHSVFGAAAMYFVCACLTGYSWYKSSWGAKPLPTMGDT 1093
            MMRAVETLRQRLP     +LGY+PV  SDS          RGEFE++ G + G R  +RD RRPRR                          +LWPPYTPLYTNMKVLRRKRLDASMMYSRAGPCTK+CF+ SLWG  FL+W+G TLASGSPYIIPE    TNLA S SVFGAAAMY VCACLTGYSWYKSSWGA+PLPT+GD+
Sbjct:    1 MMRAVETLRQRLP----PSLGYAPVLLSDSXXXXXXXX--RGEFEIAGGNFGGGRHQDRDLRRPRRXXXXXXXXXXXXXXXXXXXXXXXXXXLLWPPYTPLYTNMKVLRRKRLDASMMYSRAGPCTKICFLTSLWGASFLTWLGFTLASGSPYIIPEDPPATNLARSRSVFGAAAMYLVCACLTGYSWYKSSWGARPLPTLGDS 198
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig124.2034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K3S5_9PHAE1.100e-7363.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig124contigH-canaliculatus_F_contig124:15087..17786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_002760.1
Exons3
Model size1099
Cds size612
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig124.2034.1prot_H-canaliculatus_F_contig124.2034.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig124 15087..16225 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928954.357809-CDS-H-canaliculatus_F_contig124:15086..153311622928954.357809-CDS-H-canaliculatus_F_contig124:15086..15331Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig124 15087..15331 -
1696845628.1662045-CDS-H-canaliculatus_F_contig124:15086..153311696845628.1662045-CDS-H-canaliculatus_F_contig124:15086..15331Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig124 15087..15331 -
1622928954.3916733-CDS-H-canaliculatus_F_contig124:15858..162251622928954.3916733-CDS-H-canaliculatus_F_contig124:15858..16225Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig124 15859..16225 -
1696845628.1761432-CDS-H-canaliculatus_F_contig124:15858..162251696845628.1761432-CDS-H-canaliculatus_F_contig124:15858..16225Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig124 15859..16225 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928954.406969-UTR-H-canaliculatus_F_contig124:16225..166001622928954.406969-UTR-H-canaliculatus_F_contig124:16225..16600Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig124 16226..16600 -
1696845628.1862726-UTR-H-canaliculatus_F_contig124:16225..166001696845628.1862726-UTR-H-canaliculatus_F_contig124:16225..16600Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig124 16226..16600 -
1622928954.41906-UTR-H-canaliculatus_F_contig124:17674..177861622928954.41906-UTR-H-canaliculatus_F_contig124:17674..17786Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig124 17675..17786 -
1696845628.1958501-UTR-H-canaliculatus_F_contig124:17674..177861696845628.1958501-UTR-H-canaliculatus_F_contig124:17674..17786Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig124 17675..17786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig124.2034.1

>prot_H-canaliculatus_F_contig124.2034.1 ID=prot_H-canaliculatus_F_contig124.2034.1|Name=mRNA_H-canaliculatus_F_contig124.2034.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=204bp
MMRAVETLRQRLPGAVGATLGYSPVQASDSEDEIDDNDGGRGEFELSRGY
AGDRFNNRDGRRPRRRAGSGGTVSAAGARAGEGVGQEENDMLWPPYTPLY
TNMKVLRRKRLDASMMYSRAGPCTKVCFVLSLWGVFFLSWVGSTLASGSP
YIIPEASEETNLAWSHSVFGAAAMYFVCACLTGYSWYKSSWGAKPLPTMG
DTD*
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mRNA from alignment at H-canaliculatus_F_contig124:15087..17786-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig124.2034.1 ID=mRNA_H-canaliculatus_F_contig124.2034.1|Name=mRNA_H-canaliculatus_F_contig124.2034.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2700bp|location=Sequence derived from alignment at H-canaliculatus_F_contig124:15087..17786- (Hapterophycus canaliculatus Oshoro5f female)
GGATGTTCTGTCTTCGCTCTGGGAACACGCAACACTCCAGCTTTTGACTT
CTCACACGGACTACCAAGGCAGGAAAGCCTGGAAAGGAAAGGCTTCGAAC
GGGTCGATCGCGGTACGAACCATGCCCTGAGTACGAGAGAGCAGGACTCT
TTTTGGCAGTGTAGTCCGAGCAATCCGGAGCGAGATGAGAGAATCCGCAT
CTCCGCCTCACGGAACGGGTAGTGTTAAGTCTTTTCAGGCCTGACTCGAA
TGAAAACCGTGCCCTAGCTTCCCGAGTACATTACATGTACTCACCTGTGA
CCCCAAAATGTTTCCCTGCGCTTCCTTGTAACCAACAACACTCTTTTTTG
TGTGCCCACACGTCTTCACGAAAAATGGAAAAATTCATCAGAGCACTCAT
CTTTCCGCAGGTCTGCCCGCACAGACTCGTGCAGCGTACGTAAAGAAGTC
AGGCTGGTTTGGTTGTAGAGGAAGGAGGCGGAGCCTTCGATGAAATCGGC
TCTGTGCCCCCCGTTGTTTGAGAACGAGAAGGTACTCGCCAGTTCGGATT
CGGTTAGCAGAGACAGCAGCGTAGGGAACCTACAGCAAAATAAAGTCGGA
GCTCACACCAGAAACCTTCTACCTGTGCCCGAGGACACCCTGTCGTTTTT
TATGTACCGACACAACGTAAGTTGTTGTTTGGCTCCTTGTGCCACGTACA
TACTTGGGAGCGTGCCGCTGTTCACGTAATTGGGTAAGGGATACAGGCGG
ACGTCACTTATTTGATCACACCTTTGTTGTTGCACCATGCGACTTGCCCT
CGCCCGTTTCTGGGTGAACTCAGCTCTGGTCATTTGTGAGAGAGGATAAA
GGACCGCAGCATGGACATAGCGGGAAAGTTTTTGACGGCGGTGTTGATTG
TCATCAACGGCGACCATTGATCTCCATCCACATGCCGGCACATTTGTCCA
GATGTCCAGATTCCTGCAGCAGCAAACGCATCATCACAGTTTCCTTCCGT
GATCCTGGTTTCGATCCCCCGAAACTCCCGTAAATCTTCCAACAGCGGGG
AATGCCTGCGGGCGGAGGGGTGCGGGACCGCTGACACCTCCCGCCCTTCG
CCCTTCGTTCACCGGCAACCGCGAAACATAACTGGTAGGCGCCGACTTCC
CCTCCTTGCTTTCCTCTCGCGTGATCTCGGCCGCAGGTGCCGTAACTCTT
TCCCGCGCGCGATTGTGGCTGAAGACGTCGTTCGTTACCTTTGGGCCGAG
ACGGGCGCACAAAGTTCCCGGGCCGGTTGCCCCCTCCTCCACAAGGCGGA
GACTGGAAGGCCAGGCAGGGAGGGAAAATTGTTGCGGAGGGAGAGGGGGG
AAGGGTGGATAGGGCTTACACGCAGCAAGGGAGGGCAGGCTCCACGTTTT
TTTCTCAGCGATTACTGCGTGCACTGCCGCGGAGGACCCCGGTGATACGC
CGCCCGAGCACGTCTTCTACCGGCGACACCACCAGGAGCGCAAGCGAGCG
GCTGGACCGGCGGTGACGGTGGCCCAAAACACCCCATCCCTCCAGGGATA
GCGCGACACGCATGATGAGAGCGGTCGAGACGCTGCGGCAGCGGCTGCCT
GGCGCCGTCGGTGCAACTCTGGGGTACTCGCCAGTGCAGGCGTCTGACAG
CGAAGACGAAATCGACGACAACGACGGCGGACGGGGAGAGTTCGAGTTGA
GTCGGGGCTACGCCGGAGATAGATTCAACAATCGCGACGGGCGAAGACCC
CGGCGAAGAGCCGGCAGCGGGGGCACCGTGTCGGCGGCGGGGGCGCGGGC
GGGGGAAGGGGTGGGACAAGAGGAGAACGATATGTTGTGGCCGCCGTATA
CGCCGCTCTACACCAATATGAAGGTGTTGAGACGGAAACGTCTGGACGCC
TCTATGATGTACTCCCGAGCAGGGCCATGTGAGTTGCGATGTTGTGATAC
CTCCTGAACGTTAAGCCGGAGTGCAAGGGAAGTATTGCGTTCACTTCCTC
CGCTTGGTGTTCTTCTCGGGTGCGCACCCTATCCCCTCTCGGGTGAGCCG
ACGTGCTTCTTCCAACTTGGCCTCCTCTCTACGCCAAGCTTCCTCGATGA
AGTAGGGCTTGTTCGAAGCCGGCTGGCACCAAGGGGCGGTGCGACTGTCT
GATGATTGCGTTGTTGTTGTTTTTGACATTCTCGTCATTGTCGCTGTTTC
GGACGCTGTGTTCGATGCTGCTGTTGTAGTCGCTGTCGCGTATCTGCCCT
CTTACCCGACCTTTGAAAAGGCCCGGAGGCCCGATCAATTCACCGTCACA
ACCACGACCACATAACTATCCACGCACACGCAAACACACACAAGGCACGA
CCGAGGACATGCTTCACAACAGCCTCGCCCCTCTTTCCTCCGGCGGCCGA
AAAAAGAAAGCCCTCTCCCAACTCACACTCACCTGCCTAAACCCCAACAC
GCCAGGTACAAAAGTTTGCTTCGTGTTGTCACTCTGGGGCGTGTTCTTCT
TGTCGTGGGTCGGTTCAACCCTGGCGAGCGGGTCGCCCTACATCATCCCG
GAGGCCAGCGAGGAGACGAACCTGGCTTGGTCCCACTCGGTCTTCGGTGC
AGCGGCCATGTACTTTGTCTGCGCCTGTCTGACCGGGTACTCGTGGTACA
AGTCGTCCTGGGGGGCGAAACCGTTACCAACCATGGGGGACACGGATTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig124:15087..17786-

>mRNA_H-canaliculatus_F_contig124.2034.1 ID=mRNA_H-canaliculatus_F_contig124.2034.1|Name=mRNA_H-canaliculatus_F_contig124.2034.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1224bp|location=Sequence derived from alignment at H-canaliculatus_F_contig124:15087..17786- (Hapterophycus canaliculatus Oshoro5f female)
ATGATGAGAGCGGTCGAGACGCTGCGGCAGCGGCTGCCTGGCGCCGTCGG
TGCAACTCTGGGGTACTCGCCAGTGCAGGCGTCTGACAGCGAAGACGAAA
TCGACGACAACGACGGCGGACGGGGAGAGTTCGAGTTGAGTCGGGGCTAC
GCCGGAGATAGATTCAACAATCGCGACGGGCGAAGACCCCGGCGAAGAGC
CGGCAGCGGGGGCACCGTGTCGGCGGCGGGGGCGCGGGCGGGGGAAGGGG
TGGGACAAGAGGAGAACGATATGTTGTGGCCGCCGTATACGCCGCTCTAC
ACCAATATGAAGGTGTTGAGACGGAAACGTCTGGACGCCTCTATGATGTA
CTCCCGAGCAGGGCCATATGATGAGAGCGGTCGAGACGCTGCGGCAGCGG
CTGCCTGGCGCCGTCGGTGCAACTCTGGGGTACTCGCCAGTGCAGGCGTC
TGACAGCGAAGACGAAATCGACGACAACGACGGCGGACGGGGAGAGTTCG
AGTTGAGTCGGGGCTACGCCGGAGATAGATTCAACAATCGCGACGGGCGA
AGACCCCGGCGAAGAGCCGGCAGCGGGGGCACCGTGTCGGCGGCGGGGGC
GCGGGCGGGGGAAGGGGTGGGACAAGAGGAGAACGATATGTTGTGGCCGC
CGTATACGCCGCTCTACACCAATATGAAGGTGTTGAGACGGAAACGTCTG
GACGCCTCTATGATGTACTCCCGAGCAGGGCCATGTACAAAAGTTTGCTT
CGTGTTGTCACTCTGGGGCGTGTTCTTCTTGTCGTGGGTCGGTTCAACCC
TGGCGAGCGGGTCGCCCTACATCATCCCGGAGGCCAGCGAGGAGACGAAC
CTGGCTTGGTCCCACTCGGTCTTCGGTGCAGCGGCCATGTACTTTGTCTG
CGCCTGTCTGACCGGGTACTCGTGGTACAAGTCGTCCTGGGGGGCGAAAC
CGTTACCAACCATGGGGGACACGGATTGAGTACAAAAGTTTGCTTCGTGT
TGTCACTCTGGGGCGTGTTCTTCTTGTCGTGGGTCGGTTCAACCCTGGCG
AGCGGGTCGCCCTACATCATCCCGGAGGCCAGCGAGGAGACGAACCTGGC
TTGGTCCCACTCGGTCTTCGGTGCAGCGGCCATGTACTTTGTCTGCGCCT
GTCTGACCGGGTACTCGTGGTACAAGTCGTCCTGGGGGGCGAAACCGTTA
CCAACCATGGGGGACACGGATTGA
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