mRNA_H-canaliculatus_F_contig12309.1979.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12309.1979.1
Unique NamemRNA_H-canaliculatus_F_contig12309.1979.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12309.1979.1 vs. uniprot
Match: A0A6H5L0W0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L0W0_9PHAE)

HSP 1 Score: 385 bits (988), Expect = 2.690e-128
Identity = 198/317 (62.46%), Postives = 254/317 (80.13%), Query Frame = 1 
Query:    1 ARAAVGLVTLVMVFLVAGLLSCCLLPCLYKLLGASRQERLRERMDFGRRMPHFRGNLIMVLASLAAIATASGAVWGLQKSDSGLTNIERSTQDVANDLLKVLELPTDTSTALDEVQAAYDVLDSSIDQCENGYLLSPVFDQFDLNSLTDGVQSEIDNLNEESLGELASDVQGVSDAVNDTEGVRKGVVWPTLILALLFTAIFVAIGAGTYECVAFGHSTCDAASCFISPCTVLVAVVIWLCAASAVALSALTGDFCIDPDGNANSLIGDNADGDGQLAQLITYYTTDCSTENQAVDAIISAQEIAVPVLQSTLPQIY 951
            A+ + GLVTL++VFLVAGLL           LG SRQERLRERM FG++  H+ GN++MVLAS+AAIA+A+GA+WGLQ++DSGLTNIE +TQ++A D+L +L L  DTS ALD+V A+Y+ L  S+D C+NG +LS + D FD+NSLT  VQ+EID+++E++ GELA DVQ +SDAV+DTEG RKG++WP LIL+L+FTA FVA+   TYECVAFG+  C  ASC I+PCT+ VAVVIW+CAA AV+LSALTGDFCIDPD NAN LI DN D  G++A LITYYT DC++EN AVDAII+AQE+AVP++QS +P +Y
Sbjct:   54 AQYSAGLVTLIIVFLVAGLLXXXXXXXXXXXLGTSRQERLRERMKFGKQT-HYGGNILMVLASVAAIASAAGAIWGLQRADSGLTNIEDATQNMATDMLTILNLANDTSVALDQVTASYEALQESVDGCDNGAILSSLLDAFDINSLTASVQAEIDDVSEDNFGELADDVQAISDAVSDTEGARKGLLWPVLILSLMFTAFFVAVSVSTYECVAFGYRDCAPASCCINPCTIFVAVVIWICAALAVSLSALTGDFCIDPDANANELITDNTD--GEIADLITYYTGDCTSENAAVDAIITAQEVAVPIIQSVVPTLY 367
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BLAST of mRNA_H-canaliculatus_F_contig12309.1979.1 vs. uniprot
Match: D7FQM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM7_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 9.330e-52
Identity = 107/245 (43.67%), Postives = 156/245 (63.67%), Query Frame = 1 
Query:   16 GLVTLVMVFLVAGLLSCCLLPCLYKLLGASRQERLRERMDFGRRMPHFRGNLIMVLASLAAIATASGAVWGLQKSDSGLTNIERSTQDVANDLLKVLELPTDTSTALDEVQAAYDVLDSSIDQCENGYLLSPVFDQFDLNSLTDGVQSEIDNLNEESLGELASDVQGVSDAVNDTEGVRKGVVWPTLILALLFTAIFVAIGAGTYECVAFGHSTCDA-ASCFISPCTVLVAVVIWLCAASAVALS 747
            GL+TL  +F+ AGLL+C +LPCLY     SRQ  L  R++ G    H  G L+MVL S AA+A  S A+ GL+K+DSG+  IE  T+ +A D+L+++ LP DT+  L  V  +YDVL++S+  CEN  +   +    D  SL   VQ+ ID ++  SL ++A  VQ +SDA+  T+ +R+ +VWPT+ILAL+F A+F+ I   TYE VA    +C A  +   +P  V +AVV++LCAAS ++LS
Sbjct:    7 GLLTLASIFVAAGLLACAVLPCLYCCFRKSRQAHLVTRLENGPHR-HCAGGLLMVLVSWAALACCSSAIAGLEKADSGMLVIEDRTEAIAKDVLEIIGLPADTAVGLGLVSDSYDVLEASVGDCENPDIAQAIVAGLDFGSLASEVQTAIDEIDRTSLADIAKQVQDISDAMYTTKVLRRTIVWPTIILALVFVALFILISCTTYEAVACARPSCRAPCTGGFAPFVVFLAVVVYLCAASVISLS 250
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12309.1979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0W0_9PHAE2.690e-12862.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FQM7_ECTSI9.330e-5243.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12309contigH-canaliculatus_F_contig12309:131..3640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size963
Cds size963
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12309.1979.1prot_H-canaliculatus_F_contig12309.1979.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12309 131..3640 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928947.7898037-CDS-H-canaliculatus_F_contig12309:130..2581622928947.7898037-CDS-H-canaliculatus_F_contig12309:130..258Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12309 131..258 +
1696845624.9791577-CDS-H-canaliculatus_F_contig12309:130..2581696845624.9791577-CDS-H-canaliculatus_F_contig12309:130..258Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12309 131..258 +
1622928947.8083289-CDS-H-canaliculatus_F_contig12309:1109..12811622928947.8083289-CDS-H-canaliculatus_F_contig12309:1109..1281Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12309 1110..1281 +
1696845624.9874222-CDS-H-canaliculatus_F_contig12309:1109..12811696845624.9874222-CDS-H-canaliculatus_F_contig12309:1109..1281Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12309 1110..1281 +
1622928947.8264832-CDS-H-canaliculatus_F_contig12309:1858..20651622928947.8264832-CDS-H-canaliculatus_F_contig12309:1858..2065Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12309 1859..2065 +
1696845624.9965994-CDS-H-canaliculatus_F_contig12309:1858..20651696845624.9965994-CDS-H-canaliculatus_F_contig12309:1858..2065Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12309 1859..2065 +
1622928947.8409894-CDS-H-canaliculatus_F_contig12309:2848..30891622928947.8409894-CDS-H-canaliculatus_F_contig12309:2848..3089Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12309 2849..3089 +
1696845625.0052946-CDS-H-canaliculatus_F_contig12309:2848..30891696845625.0052946-CDS-H-canaliculatus_F_contig12309:2848..3089Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12309 2849..3089 +
1622928947.8563824-CDS-H-canaliculatus_F_contig12309:3425..36401622928947.8563824-CDS-H-canaliculatus_F_contig12309:3425..3640Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12309 3426..3640 +
1696845625.013865-CDS-H-canaliculatus_F_contig12309:3425..36401696845625.013865-CDS-H-canaliculatus_F_contig12309:3425..3640Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12309 3426..3640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12309.1979.1

>prot_H-canaliculatus_F_contig12309.1979.1 ID=prot_H-canaliculatus_F_contig12309.1979.1|Name=mRNA_H-canaliculatus_F_contig12309.1979.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=321bp
ARAAVGLVTLVMVFLVAGLLSCCLLPCLYKLLGASRQERLRERMDFGRRM
PHFRGNLIMVLASLAAIATASGAVWGLQKSDSGLTNIERSTQDVANDLLK
VLELPTDTSTALDEVQAAYDVLDSSIDQCENGYLLSPVFDQFDLNSLTDG
VQSEIDNLNEESLGELASDVQGVSDAVNDTEGVRKGVVWPTLILALLFTA
IFVAIGAGTYECVAFGHSTCDAASCFISPCTVLVAVVIWLCAASAVALSA
LTGDFCIDPDGNANSLIGDNADGDGQLAQLITYYTTDCSTENQAVDAIIS
AQEIAVPVLQSTLPQIYAVSK
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mRNA from alignment at H-canaliculatus_F_contig12309:131..3640+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12309.1979.1 ID=mRNA_H-canaliculatus_F_contig12309.1979.1|Name=mRNA_H-canaliculatus_F_contig12309.1979.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3510bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12309:131..3640+ (Hapterophycus canaliculatus Oshoro5f female)
GCCCGCGCAGCTGTCGGGCTTGTGACGCTCGTCATGGTGTTCCTTGTGGC
CGGATTGCTGTCGTGCTGCTTGCTTCCCTGCCTGTACAAGCTCCTGGGGG
CGTCGCGGCAGGAACGCCTGCGGGAGAGGTTTGTACCTCCTTCCGGCCTC
CAATTGTGGTGCATGGGCACGGGTTGGTTTGCGTACGCGTCGGCGAAAAA
CGTGAAGGGTTGGGACGGTGGGGGGGAGGTTAGGGTCTCGGTCGGCTGGC
GTGTGCATATTGTTTGGCGTCGGTGCAGACGTGTGGCACCGGTGTACGTG
CGTCCTTGTGGTGGAGTGCGGACCGCGGGTTGTGTTGCCGCGTCCCCTAG
CGGGTTGTTTTTCTACCTCGTGTTTGTTGTGCCTCGAGTCGTTGACTGCG
CGGAAGACAACAGAGCCTTCGTGCGACAGACGGGGCGCAAGTCGGAGAAT
TTCGTCGGCTCCCTCGACGCTTCCCCTCCCAGTAAGAAGCGCAACCTTCG
CTGAGACGCTCGAAATGACCAGCGGGTGTTTGCGACCCTTCGACGGCCAG
TCATACCCCCATGATCACCGCCAACACCTCCACTAGCAGCACCAGCACCA
CCGAAGAAGGTCACCAATTACCGCTCCCTCCGAAGCTCCGTCGCCACCAT
CACGCGCTACCACACCACCACACCACCACCACCGCCGGACGCGATTATCA
TTGGCACCACAGACCAACACGGCCTCCCATCCCCTCTACTCGCTGGTGCT
GCGGCGTGTGTTCTGCTCGCTCGCTGCGCTCGGTTCTCGCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCGCCGCCGGGGGCGCGGGGTGTCCTCTCCCCCCCCGGCCCCGGCGCTC
CCCCCCCCCCCCCCCCCCCCCCGCCCCTGACATAAACACGCTCGCATAAT
ACACACACGCGTACACAACCAACTTCCAGGATGGATTTCGGCCGGCGAAT
GCCCCACTTCCGCGGGAACTTGATCATGGTGCTGGCGAGCCTGGCGGCCA
TAGCGACAGCGTCCGGTGCAGTTTGGGGGTTGCAGAAGTCGGATTCCGGC
CTGACCAACATCGAGCGCTCCACGCAGGACGTCGCGAACGACCTTCTGAA
GGTGAGCTCTCTTTTTTTTTTTGTTCTCTTTTTCACCCCTGAAAGCTTTC
GCGCTCCTTCTTTGGTGGCGATGATTACGTCGTGGTGGGGTTTATCTTGT
TGTGTGCTTCATTCGGCTCTTTGTTGCTCTAGGTTTGGCCTTCTCCTTGC
ATCGCGCATGCAGGCCTATTTGCTGTGCTTCCTCTCTGCGTACTCCCGGT
GCGTTGGTCGCCACGGTTGCCGCCGCCGCTGCCATGCACCGCTGATCCCG
GTGGTGCTGAGGCGTACACAGACATGTGTGTTGGAATCTTGAAACGAGCA
GTCCAGTGGCCATCTTGCACCTCCGAAGCCTTCCAGACAGCACCCTTCCT
GCCCTTCCGCCCCATAGCCGCCTCCCGACACACAACCCTCGGCAGCGAAA
CGCCTCCAGGACAAGACAGCATCCGCGCGAACACGAACACAAACAACCCT
CCTGGGCACCGTGCCTATACTGCGACCGTGCTGCACGATCTGCAAGCGAC
CGTCCCGCGCCCCGATAACCCTCCTCCCCCCTCCCGCCTCTGTCCGCCCC
TTCTCGACCTTCCGCACACGGAGCGAAGGTTTTGGAACTCCCGACCGACA
CCTCCACCGCCCTCGACGAAGTGCAAGCGGCGTACGACGTCCTCGACAGC
AGCATCGACCAGTGCGAGAACGGGTACCTGCTGTCGCCCGTGTTCGACCA
GTTCGACCTGAACTCGCTCACGGACGGGGTGCAGTCGGAGATAGACAACC
TCAACGAGGAAAGCCTGGGGGAGCTCGCCAGCGACGTGAGCAAGGGTTGC
TCATAGGTTTGTTTTTGGTGTGCCCAGTTCGTCTTCGTCTCCTTCTTCTT
CTCCTTCTCTCCTTCTTCTTCTTCGTCGTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCCTCTTGTTCTTGCACATAGCTCTTTGTTGTAGTTGGCGGG
GGACCTGAGCGGGGGCGACCTTTCCGCAGTTTGTGCGGTTTAGCTGTCTC
AGGTCTCGCCTGCGCGGGAATGTTCAGGTACTGTTGGTCGCAAGTGGGTG
GTCGCGGGAGGAACCTGCACGAGAACCTGCGCGGCGTTCGTTGAAGACGT
GTTGTGGGGCGATCGCACCGGCTTTGACTATGGCCCTCTTTTTCAACCCC
AGCTCAAATAAGGAGCGCCAACCGCGTCTTCCCCCACCCCTTTTCGCTTG
CTTTGCTGTTGTTGCCCTTTCGGCAACGCTCCAGCCACCCCCAATTCCCG
CAGAGTACGAGACGACATATATCCCCCGAATGTTATTCCCGAAGGAAGAA
CTGTAACCCCTGAACGGTAACGGCCCCGCAACAAGCACACGTCTGCGCCT
CTTCTCTCACGTCCCAAACTTTGGTCCAAGGTTCCTGCTTTTCTCAGCCG
CAACATCCCTGACCCGCGAAGTGGACGAAGCCGGGGCAGCCGTCCCAACC
GCCGACGACGAGTGTTCCAAGCGAACGCACCGTGAAAACACGCCTCTTTC
ACCCCTGCCCTCTCTCTCGCCACGAACGTGCTCTTGTCGTCCCGCGTCTC
TTGGGCTGCTCGCCGCAGGTCCAAGGCGTGTCCGACGCCGTAAACGACAC
GGAAGGCGTCCGGAAGGGTGTGGTGTGGCCGACGCTCATCCTCGCGCTGC
TGTTCACGGCGATCTTCGTCGCCATCGGCGCCGGGACCTACGAGTGCGTC
GCGTTCGGGCACTCTACCTGCGACGCCGCCTCCTGCTTCATCTCCCCGTG
CACCGTCCTCGTGGCCGTCGTGATCTGGCTTTGCGCCGCGTCCGCCGTTG
CGTTGAGCGGTGAGAGAGGCGTGGAGGGTATGCGTGGTGGGGAGGGGAGG
GGAGGGGAGGGGACGGAAAGGGCGGGGGGCGGGGAGGGTGCTGCGGAGGG
AATGGCGAGACTGATCCTCTACGCCAAAACCGACACGTGGGATCAACCCC
TCCGGTCGGCGTGCGCTGTAGTCGCCATCGTCTTGACATACTAGCGCAGG
AGACCCGTGGCTTCGTTGCTGCTCTTGCCCCCACCCACCCACCCCCTTCG
CCTTCCTCCTTTCATCTAACTCTCCCCGGCCTGCCCCTGCTTGCCCCCGC
CCTCCGTCCCCGCCCCCGTCCTCTTCTGTAACGCCCACGTCCCAGCCCTG
ACCGGTGACTTCTGCATCGACCCGGACGGCAATGCCAACTCGCTGATAGG
CGACAACGCGGACGGCGACGGTCAACTCGCCCAGTTGATCACCTACTATA
CGACCGATTGTTCCACCGAAAACCAGGCAGTGGACGCCATCATCAGTGCT
CAGGAGATCGCGGTCCCCGTGCTGCAGTCAACCCTCCCTCAAATCTATGC
CGTGAGTAAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12309:131..3640+

>mRNA_H-canaliculatus_F_contig12309.1979.1 ID=mRNA_H-canaliculatus_F_contig12309.1979.1|Name=mRNA_H-canaliculatus_F_contig12309.1979.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1926bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12309:131..3640+ (Hapterophycus canaliculatus Oshoro5f female)
GCCCGCGCAGCTGTCGGGCTTGTGACGCTCGTCATGGTGTTCCTTGTGGC
CGGATTGCTGTCGTGCTGCTTGCTTCCCTGCCTGTACAAGCTCCTGGGGG
CGTCGCGGCAGGAACGCCTGCGGGAGAGGCCCGCGCAGCTGTCGGGCTTG
TGACGCTCGTCATGGTGTTCCTTGTGGCCGGATTGCTGTCGTGCTGCTTG
CTTCCCTGCCTGTACAAGCTCCTGGGGGCGTCGCGGCAGGAACGCCTGCG
GGAGAGGATGGATTTCGGCCGGCGAATGCCCCACTTCCGCGGGAACTTGA
TCATGGTGCTGGCGAGCCTGGCGGCCATAGCGACAGCGTCCGGTGCAGTT
TGGGGGTTGCAGAAGTCGGATTCCGGCCTGACCAACATCGAGCGCTCCAC
GCAGGACGTCGCGAACGACCTTCTGAAGGATGGATTTCGGCCGGCGAATG
CCCCACTTCCGCGGGAACTTGATCATGGTGCTGGCGAGCCTGGCGGCCAT
AGCGACAGCGTCCGGTGCAGTTTGGGGGTTGCAGAAGTCGGATTCCGGCC
TGACCAACATCGAGCGCTCCACGCAGGACGTCGCGAACGACCTTCTGAAG
GTTTTGGAACTCCCGACCGACACCTCCACCGCCCTCGACGAAGTGCAAGC
GGCGTACGACGTCCTCGACAGCAGCATCGACCAGTGCGAGAACGGGTACC
TGCTGTCGCCCGTGTTCGACCAGTTCGACCTGAACTCGCTCACGGACGGG
GTGCAGTCGGAGATAGACAACCTCAACGAGGAAAGCCTGGGGGAGCTCGC
CAGCGACGTTTTGGAACTCCCGACCGACACCTCCACCGCCCTCGACGAAG
TGCAAGCGGCGTACGACGTCCTCGACAGCAGCATCGACCAGTGCGAGAAC
GGGTACCTGCTGTCGCCCGTGTTCGACCAGTTCGACCTGAACTCGCTCAC
GGACGGGGTGCAGTCGGAGATAGACAACCTCAACGAGGAAAGCCTGGGGG
AGCTCGCCAGCGACGTCCAAGGCGTGTCCGACGCCGTAAACGACACGGAA
GGCGTCCGGAAGGGTGTGGTGTGGCCGACGCTCATCCTCGCGCTGCTGTT
CACGGCGATCTTCGTCGCCATCGGCGCCGGGACCTACGAGTGCGTCGCGT
TCGGGCACTCTACCTGCGACGCCGCCTCCTGCTTCATCTCCCCGTGCACC
GTCCTCGTGGCCGTCGTGATCTGGCTTTGCGCCGCGTCCGCCGTTGCGTT
GAGCGGTCCAAGGCGTGTCCGACGCCGTAAACGACACGGAAGGCGTCCGG
AAGGGTGTGGTGTGGCCGACGCTCATCCTCGCGCTGCTGTTCACGGCGAT
CTTCGTCGCCATCGGCGCCGGGACCTACGAGTGCGTCGCGTTCGGGCACT
CTACCTGCGACGCCGCCTCCTGCTTCATCTCCCCGTGCACCGTCCTCGTG
GCCGTCGTGATCTGGCTTTGCGCCGCGTCCGCCGTTGCGTTGAGCGCCCT
GACCGGTGACTTCTGCATCGACCCGGACGGCAATGCCAACTCGCTGATAG
GCGACAACGCGGACGGCGACGGTCAACTCGCCCAGTTGATCACCTACTAT
ACGACCGATTGTTCCACCGAAAACCAGGCAGTGGACGCCATCATCAGTGC
TCAGGAGATCGCGGTCCCCGTGCTGCAGTCAACCCTCCCTCAAATCTATG
CCGTGAGTAAACCCTGACCGGTGACTTCTGCATCGACCCGGACGGCAATG
CCAACTCGCTGATAGGCGACAACGCGGACGGCGACGGTCAACTCGCCCAG
TTGATCACCTACTATACGACCGATTGTTCCACCGAAAACCAGGCAGTGGA
CGCCATCATCAGTGCTCAGGAGATCGCGGTCCCCGTGCTGCAGTCAACCC
TCCCTCAAATCTATGCCGTGAGTAAA
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