mRNA_H-canaliculatus_F_contig12221.1910.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12221.1910.1
Unique NamemRNA_H-canaliculatus_F_contig12221.1910.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12221.1910.1 vs. uniprot
Match: A0A6H5JWF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF8_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 8.440e-55
Identity = 111/241 (46.06%), Postives = 150/241 (62.24%), Query Frame = 3
Query:    3 PELSGLEEEVANRNVKWRGLSLIFADAAFYEFVLSLESGYYHSLKNPALLAMYFGDLPKKFLEVVSSSVTVRVKFQRCVDSVEVRGEHGQALSNSRRFIGLFHFFMSKWHNMRMSDFAKRLTKV*TIIKE--DKKA-----RGALGDQLNTSSNQALRDKVGPGKTKRDTKTPPSPTIRQMERRVELAGMIGSHTFSKLRAKDLKEYIKEYGGAFQSKSNVRELRSILKGIAPGIGVDEEP 704
            P L GLE EV  RNVKWRGLSLIFADA+F+EFV +LE GY H+LK PAL A Y GDLP K LEVVSS+  V++ F+RCVDS+      G  +   R +  LF FF+ KWHNMRM+D+ K+L+    ++K+  DK A     +GAL ++L +  N+    K G    + +T+ P +P   + ++RV+LA  IGS  F +L   +L   IK  GG    +     LRS+L+ IAPG+G D +P
Sbjct:  118 PGLKGLEREVDRRNVKWRGLSLIFADASFFEFVYTLEDGYLHALKQPALFATYQGDLPAKILEVVSSATPVKMAFRRCVDSIRKEAGKGVVM---RSYGVLFDFFLLKWHNMRMADYVKKLSNAQKVVKQRKDKSAEKGGDKGALRERLKSMVNK----KTG---VRTETRKPTTP---ERQKRVDLADSIGSRDFMRLTKGELGSRIKACGGVVSGRERQYGLRSMLRAIAPGVGEDVDP 345          
BLAST of mRNA_H-canaliculatus_F_contig12221.1910.1 vs. uniprot
Match: A0A6H5KPL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPL9_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 3.030e-53
Identity = 111/241 (46.06%), Postives = 150/241 (62.24%), Query Frame = 3
Query:    3 PELSGLEEEVANRNVKWRGLSLIFADAAFYEFVLSLESGYYHSLKNPALLAMYFGDLPKKFLEVVSSSVTVRVKFQRCVDSVEVRGEHGQALSNSRRFIGLFHFFMSKWHNMRMSDFAKRLTKV*TIIKE--DKKA-----RGALGDQLNTSSNQALRDKVGPGKTKRDTKTPPSPTIRQMERRVELAGMIGSHTFSKLRAKDLKEYIKEYGGAFQSKSNVRELRSILKGIAPGIGVDEEP 704
            P L GLE EV  RNVKWRGLSLIFADA+F+EFV +LE GY H+LK PAL A Y GDLP K LEVVSS+  V++ F+RCVDS+      G  +   R +  LF FF+ KWHNMRM+D+AK+L+    ++++  DK A     +GAL D+L +  N+    K G    + +T+ P +P   + ++RV+LA  IG   F +L   +L   IK  GG    +    +LRS+L+ IAPG G D +P
Sbjct:  227 PGLKGLEREVDRRNVKWRGLSLIFADASFFEFVYTLEDGYLHALKQPALFATYQGDLPAKILEVVSSATPVKMAFRRCVDSIRKEAGKGVVM---RSYGVLFDFFLLKWHNMRMADYAKKLSNAQKVVEQRKDKSAEKGGDKGALRDRLKSMVNK----KTG---VRTETRKPTTP---ERQKRVDLADSIGFRDFMRLTKGELASRIKACGGVVSGRERQYDLRSMLRAIAPGEGEDVDP 454          
BLAST of mRNA_H-canaliculatus_F_contig12221.1910.1 vs. uniprot
Match: A0A6H5K2P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P3_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 4.580e-37
Identity = 80/155 (51.61%), Postives = 105/155 (67.74%), Query Frame = 3
Query:    3 PELSGLEEEVANRNVKWRGLSLIFADAAFYEFVLSLESGYYHSLKNPALLAMYFGDLPKKFLEVVSSSVTVRVKFQRCVDSVEVRGEHGQALSNSRRFIGLFHFFMSKWHNMRMSDFAKRLTKV*TIIKE--DKKA-----RGALGDQLNTSSNQ 446
            P L GLE EV  RNVKWRGLSLI ADA+F+EFV +LE GY H+LK PAL A Y GDLP K LEVVSS+  V++ F+RCVDS+  R E G+ +   R +  LF   + KWHNM M+D+AK+L+    ++K+  DK A     +GAL ++L +  N+
Sbjct:  130 PGLKGLEREVDRRNVKWRGLSLIVADASFFEFVYTLEDGYLHALKQPALFATYQGDLPAKILEVVSSATPVKMAFRRCVDSI--RKEAGKGIV-MRSYGVLFDLNILKWHNMLMADYAKKLSNAQKVVKQRKDKSAEKGGDKGALRERLKSMVNK 281          
BLAST of mRNA_H-canaliculatus_F_contig12221.1910.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.210e-12
Identity = 50/157 (31.85%), Postives = 77/157 (49.04%), Query Frame = 3
Query:    3 PELSGLEEEVANRNVKWRGLSLIFADAAFYEFVLSLESGYYHSLKNPALLAMYFGDLPKKFLEVVSSSVTVRVKFQRCVDSVEVRGEHGQALSNSRRFIGLFHFFMSKWHNMRMSDFAKRLTKV*TIIKEDKKARGALGDQLNTSSNQALRDKVGPG 473
            P L  +  EV  RN    G  L+F   A+YEFV  +E+G YH L++P  L  Y GDL  + L VV+ S  VR  + +C  S           +       ++ F + K+HN+RM DFA+RL++  T+    + ++G L  + N  +  A  +    G
Sbjct:  188 PILQDMVGEVDARNDPVNGAGLLFPTLAWYEFVFHVENGIYHFLRDPYFLGTYLGDLSAEILRVVTESSEVRRAWAKCCPSAVAPPPFE---AQPEILDDIYKFVLQKFHNVRMGDFARRLSQNSTL----RLSKGELALRQNLRATSAKGEATAKG 337          
BLAST of mRNA_H-canaliculatus_F_contig12221.1910.1 vs. uniprot
Match: A0A6H5K7M3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M3_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 9.380e-10
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 3
Query:    6 ELSGLEEEVANRNVKWRGLSLIFADAAFYEFVLSLESGYYHSLKNPALLAMYFGDLPKKFLEVVSSSVTVRVKFQRCVDSVE 251
            EL G+ EEV  RN   R   L+F  + F + +L+LESGY+H L  PA L  Y G+LP++ L +VS S TV+  +  C  + E
Sbjct:  259 ELRGVTEEVQRRNDPTRPRGLVFVTSLFLKLLLTLESGYFHVLSQPAFLGSYLGNLPEEILRLVSESPTVQRAWDACCQARE 340          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12221.1910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JWF8_9PHAE8.440e-5546.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPL9_9PHAE3.030e-5346.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2P3_9PHAE4.580e-3751.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW14_9PHAE1.210e-1231.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7M3_9PHAE9.380e-1042.68Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12221contigH-canaliculatus_F_contig12221:40..1089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1050
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12221.1910.1prot_H-canaliculatus_F_contig12221.1910.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12221 195..416 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928937.1230912-UTR-H-canaliculatus_F_contig12221:39..1941622928937.1230912-UTR-H-canaliculatus_F_contig12221:39..194Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12221 40..194 +
1696845619.9518623-UTR-H-canaliculatus_F_contig12221:39..1941696845619.9518623-UTR-H-canaliculatus_F_contig12221:39..194Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12221 40..194 +
1622928937.1924777-UTR-H-canaliculatus_F_contig12221:416..10891622928937.1924777-UTR-H-canaliculatus_F_contig12221:416..1089Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12221 417..1089 +
1696845619.9721088-UTR-H-canaliculatus_F_contig12221:416..10891696845619.9721088-UTR-H-canaliculatus_F_contig12221:416..1089Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12221 417..1089 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928937.1740727-CDS-H-canaliculatus_F_contig12221:194..4161622928937.1740727-CDS-H-canaliculatus_F_contig12221:194..416Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12221 195..416 +
1696845619.962164-CDS-H-canaliculatus_F_contig12221:194..4161696845619.962164-CDS-H-canaliculatus_F_contig12221:194..416Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12221 195..416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12221.1910.1

>prot_H-canaliculatus_F_contig12221.1910.1 ID=prot_H-canaliculatus_F_contig12221.1910.1|Name=mRNA_H-canaliculatus_F_contig12221.1910.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=74bp
MYFGDLPKKFLEVVSSSVTVRVKFQRCVDSVEVRGEHGQALSNSRRFIGL
FHFFMSKWHNMRMSDFAKRLTKV*
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mRNA from alignment at H-canaliculatus_F_contig12221:40..1089+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12221.1910.1 ID=mRNA_H-canaliculatus_F_contig12221.1910.1|Name=mRNA_H-canaliculatus_F_contig12221.1910.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1050bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12221:40..1089+ (Hapterophycus canaliculatus Oshoro5f female)
ACCCAGAGCTGAGCGGATTGGAGGAGGAGGTGGCTAATCGCAACGTGAAG TGGCGGGGGCTCAGTCTGATTTTCGCCGACGCCGCGTTTTACGAGTTCGT GCTGTCGTTGGAGAGCGGGTATTATCATTCCCTCAAAAATCCCGCTCTCC TCGCGATGTACTTCGGCGATCTGCCAAAAAAGTTTCTGGAGGTCGTTTCT TCTTCCGTGACCGTACGGGTGAAATTTCAGCGTTGCGTTGACTCCGTCGA AGTGCGTGGCGAACACGGGCAGGCGTTAAGCAACTCACGCAGGTTCATCG GGCTGTTCCACTTTTTCATGTCGAAGTGGCACAATATGCGCATGTCTGAT TTCGCAAAGCGGTTGACGAAGGTTTAAACGATCATAAAGGAAGATAAGAA GGCGAGAGGGGCGTTGGGGGACCAATTGAATACCAGCAGTAATCAGGCAC TCAGGGACAAGGTCGGCCCTGGAAAAACAAAACGTGACACGAAGACTCCT CCATCGCCAACGATCAGACAAATGGAAAGGCGTGTCGAGCTCGCAGGGAT GATTGGATCTCATACATTCTCAAAATTAAGGGCAAAGGATCTGAAGGAAT ACATCAAGGAATATGGTGGCGCATTCCAGTCGAAGTCCAACGTGCGGGAA TTGCGGTCCATCTTAAAGGGTATCGCCCCTGGTATCGGTGTGGATGAAGA ACCGGAGTTGACAGAGGATGGAGTCGGTTGAGGCTTTTCACCGCACACGT GAGCGAGAAGGCAGTTAGTTGTAGTGTGCACATTTTCGTGGGATACTGCG GATGTTTCCATTAGGAACGGGGATGGATGAGCGTGTGTACATCGCTTGAC CTGTCCACGTAGCAAGCTTGTCTGTCGTTCCAGCTAGCCCTGTTTCAAGC GCAACTTTGACGAAGCGCTCTCCGTAGAGGACAGAAAAACCGCGTTACAA CACGCGAGTGCAAACTCGGAACATGTTCGTTCGCGTCCCTTTCTCATACA ACATGATCGGGAATGATGGAAAAAAAAGGGATCGCGCATCTACAGTACCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12221:40..1089+

>mRNA_H-canaliculatus_F_contig12221.1910.1 ID=mRNA_H-canaliculatus_F_contig12221.1910.1|Name=mRNA_H-canaliculatus_F_contig12221.1910.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=444bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12221:40..1089+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTACTTCGGCGATCTGCCAAAAAAGTTTCTGGAGGTCGTTTCTTCTTC
CGTGACCGTACGGGTGAAATTTCAGCGTTGCGTTGACTCCGTCGAAGTGC
GTGGCGAACACGGGCAGGCGTTAAGCAACTCACGCAGGTTCATCGGGCTG
TTCCACTTTTTCATGTCGAAGTGGCACAATATGCGCATGTCTGATTTCGC
AAAGCGGTTGACGAAGGTTTAAATGTACTTCGGCGATCTGCCAAAAAAGT
TTCTGGAGGTCGTTTCTTCTTCCGTGACCGTACGGGTGAAATTTCAGCGT
TGCGTTGACTCCGTCGAAGTGCGTGGCGAACACGGGCAGGCGTTAAGCAA
CTCACGCAGGTTCATCGGGCTGTTCCACTTTTTCATGTCGAAGTGGCACA
ATATGCGCATGTCTGATTTCGCAAAGCGGTTGACGAAGGTTTAA
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