prot_H-canaliculatus_F_contig1219.1883.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-canaliculatus_F_contig1219.1883.1
Unique Name	prot_H-canaliculatus_F_contig1219.1883.1
Type	polypeptide
Organism	Hapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length	206

Homology

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BLAST of mRNA_H-canaliculatus_F_contig1219.1883.1 vs. uniprot
Match: D7G4T6_ECTSI (Plastid protein-export protein secB, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4T6_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 8.690e-73
Identity = 131/203 (64.53%), Postives = 150/203 (73.89%), Query Frame = 0

Query:   12 IFCSCVMLPLLSSAFVVVP---SSVSASRRALWSRHADAVQLSGTPVVRRAR----SLPGKRPTGVKVTVLEATTD-GSEQLREQQPPETPTEQQR-EAARGRQLNIACNDVVRTILDGNPSNEKERAEALRERLLAQRDELVSPDDRMSALFFDNLLLVCQHELHPDIGVLRGQYGKAWHTILHYIEDAGWQLTDPPFSISG 205
            +  SCV L L  S F+VVP   S +SA RRA       AV+   +   R AR    S  G+RP  V    L+ATTD  SEQ REQ   E      R EAAR +QLNIACNDVVRTILDGNP+NEKERAEALR+RL++Q+D+LVSP+D MSALFFDNLLLVC+HELHPDIG+LRGQYGKAW+TILHY+EDAGWQLTDPPFSISG
Sbjct:    4 VLASCVFLSLPCSGFIVVPANSSPLSAYRRA-------AVRPPASSSRRLARCEGGSWVGERPAAVNAIALQATTDDNSEQAREQPTQEASLAAARQEAARSKQLNIACNDVVRTILDGNPTNEKERAEALRQRLISQKDDLVSPEDDMSALFFDNLLLVCEHELHPDIGILRGQYGKAWNTILHYVEDAGWQLTDPPFSISG 199

[Close]

BLAST of mRNA_H-canaliculatus_F_contig1219.1883.1 vs. uniprot
Match: A0A836CL25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL25_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.190e-29
Identity = 49/99 (49.49%), Postives = 71/99 (71.72%), Query Frame = 0

Query:  107 LNIACNDVVRTILDGNPSNEKERAEALRERLLAQRDELVSPDDRMSALFFDNLLLVCQHELHPDIGVLRGQYGKAWHTILHYIEDAGWQLTDPPFSISG 205
            LNIACNDV++TIL  +        + ++ERL+  ++ LV  DD  S LF++NL+ VC+H LHP +  L+G+Y  AW ++LH+IEDAGWQLT+PPF ++G
Sbjct:   58 LNIACNDVIKTILKADAEKLDSDMQGIKERLIRDKELLVVTDDPQSELFYNNLVCVCEHSLHPRLHELKGRYASAWKSMLHWIEDAGWQLTEPPFRVNG 156

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_F_contig1219.1883.1 vs. uniprot

BLAST of mRNA_H-canaliculatus_F_contig1219.1883.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7G4T6_ECTSI	8.690e-73	64.53	Plastid protein-export protein secB, putative n=2 ...	[more]
A0A836CL25_9STRA	1.190e-29	49.49	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..7
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..24
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 20..24
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 8..19
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 25..205
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..24 score: 0.78
None	No IPR available	TMHMM	TMhelix		coord: 7..29

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_F_contig1219	contig	H-canaliculatus_F_contig1219:26534..27624 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90	2022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_F_contig1219.1883.1	mRNA_H-canaliculatus_F_contig1219.1883.1	Hapterophycus canaliculatus Oshoro5f female	mRNA	H-canaliculatus_F_contig1219 26534..27624 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-canaliculatus_F_contig1219.1883.1 ID=prot_H-canaliculatus_F_contig1219.1883.1|Name=mRNA_H-canaliculatus_F_contig1219.1883.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=206bp
MLPRGTRSVVVIFCSCVMLPLLSSAFVVVPSSVSASRRALWSRHADAVQL
SGTPVVRRARSLPGKRPTGVKVTVLEATTDGSEQLREQQPPETPTEQQRE
AARGRQLNIACNDVVRTILDGNPSNEKERAEALRERLLAQRDELVSPDDR
MSALFFDNLLLVCQHELHPDIGVLRGQYGKAWHTILHYIEDAGWQLTDPP
FSISG*