mRNA_H-canaliculatus_F_contig1219.1883.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1219.1883.1
Unique NamemRNA_H-canaliculatus_F_contig1219.1883.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1219.1883.1 vs. uniprot
Match: D7G4T6_ECTSI (Plastid protein-export protein secB, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4T6_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 8.690e-73
Identity = 131/203 (64.53%), Postives = 150/203 (73.89%), Query Frame = 1 
Query:   34 IFCSCVMLPLLSSAFVVVP---SSVSASRRALWSRHADAVQLSGTPVVRRAR----SLPGKRPTGVKVTVLEATTD-GSEQLREQQPPETPTEQQR-EAARGRQLNIACNDVVRTILDGNPSNEKERAEALRERLLAQRDELVSPDDRMSALFFDNLLLVCQHELHPDIGVLRGQYGKAWHTILHYIEDAGWQLTDPPFSISG 615
            +  SCV L L  S F+VVP   S +SA RRA       AV+   +   R AR    S  G+RP  V    L+ATTD  SEQ REQ   E      R EAAR +QLNIACNDVVRTILDGNP+NEKERAEALR+RL++Q+D+LVSP+D MSALFFDNLLLVC+HELHPDIG+LRGQYGKAW+TILHY+EDAGWQLTDPPFSISG
Sbjct:    4 VLASCVFLSLPCSGFIVVPANSSPLSAYRRA-------AVRPPASSSRRLARCEGGSWVGERPAAVNAIALQATTDDNSEQAREQPTQEASLAAARQEAARSKQLNIACNDVVRTILDGNPTNEKERAEALRQRLISQKDDLVSPEDDMSALFFDNLLLVCEHELHPDIGILRGQYGKAWNTILHYVEDAGWQLTDPPFSISG 199
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BLAST of mRNA_H-canaliculatus_F_contig1219.1883.1 vs. uniprot
Match: A0A836CL25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL25_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.190e-29
Identity = 49/99 (49.49%), Postives = 71/99 (71.72%), Query Frame = 1 
Query:  319 LNIACNDVVRTILDGNPSNEKERAEALRERLLAQRDELVSPDDRMSALFFDNLLLVCQHELHPDIGVLRGQYGKAWHTILHYIEDAGWQLTDPPFSISG 615
            LNIACNDV++TIL  +        + ++ERL+  ++ LV  DD  S LF++NL+ VC+H LHP +  L+G+Y  AW ++LH+IEDAGWQLT+PPF ++G
Sbjct:   58 LNIACNDVIKTILKADAEKLDSDMQGIKERLIRDKELLVVTDDPQSELFYNNLVCVCEHSLHPRLHELKGRYASAWKSMLHWIEDAGWQLTEPPFRVNG 156
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1219.1883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4T6_ECTSI8.690e-7364.53Plastid protein-export protein secB, putative n=2 ... [more]
A0A836CL25_9STRA1.190e-2949.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1219contigH-canaliculatus_F_contig1219:26534..27624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionPlastid protein-export protein secB, putative
Ec32 orthologEc-20_000420.1
Exons2
Model size618
Cds size618
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928931.5866783-CDS-H-canaliculatus_F_contig1219:26533..269231622928931.5866783-CDS-H-canaliculatus_F_contig1219:26533..26923Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1219 26534..26923 -
1696845617.530652-CDS-H-canaliculatus_F_contig1219:26533..269231696845617.530652-CDS-H-canaliculatus_F_contig1219:26533..26923Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1219 26534..26923 -
1622928931.6038425-CDS-H-canaliculatus_F_contig1219:27396..276241622928931.6038425-CDS-H-canaliculatus_F_contig1219:27396..27624Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1219 27397..27624 -
1696845617.5431097-CDS-H-canaliculatus_F_contig1219:27396..276241696845617.5431097-CDS-H-canaliculatus_F_contig1219:27396..27624Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1219 27397..27624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1219.1883.1prot_H-canaliculatus_F_contig1219.1883.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1219 26534..27624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1219.1883.1

>prot_H-canaliculatus_F_contig1219.1883.1 ID=prot_H-canaliculatus_F_contig1219.1883.1|Name=mRNA_H-canaliculatus_F_contig1219.1883.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=206bp
MLPRGTRSVVVIFCSCVMLPLLSSAFVVVPSSVSASRRALWSRHADAVQL
SGTPVVRRARSLPGKRPTGVKVTVLEATTDGSEQLREQQPPETPTEQQRE
AARGRQLNIACNDVVRTILDGNPSNEKERAEALRERLLAQRDELVSPDDR
MSALFFDNLLLVCQHELHPDIGVLRGQYGKAWHTILHYIEDAGWQLTDPP
FSISG*
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mRNA from alignment at H-canaliculatus_F_contig1219:26534..27624-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1219.1883.1 ID=mRNA_H-canaliculatus_F_contig1219.1883.1|Name=mRNA_H-canaliculatus_F_contig1219.1883.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1091bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1219:26534..27624- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGCCTCGTGGAACACGGTCGGTGGTTGTAATATTTTGTTCGTGTGT
TATGCTACCATTGTTAAGCTCCGCGTTCGTCGTTGTACCATCAAGCGTTT
CGGCCTCTCGACGCGCACTGTGGTCTCGTCATGCAGATGCGGTGCAACTG
AGCGGTACCCCTGTTGTGCGTCGTGCACGAAGCTTGCCTGGAAAGCGACC
AACAGGAGTGAAAGTGACCGTGCTAGAGGTATGAGATGACTTGATTTCAT
GCGAGTGTGGACGTCCGCTTTCCTGTTATCGCTGAGACTCGATGAAGTGT
AGAGAGACTTGTTATGTTGCGTGAACAACATCAATCACAACATCTTCCGT
TCATGTTGTTCATGAGGCGCAATTGCACCGATGGCCAACGGCGATAGAAA
CCCAGCAGTTCGTGGCATAGCATACACTACTTCGACAGTAGTGGCTTACA
GATACTAGTATGGAAGCCTCGGGAATAGGTGAAAAAAAGGTGCATTCTGT
GCGCTTTTAGCGGAGAGAATTCGCACCCGACGAGTACTTCACACTCCGAA
AGGAATTCGTTCGTCTCACAGCTGTGGCAAACAACACCCTCAACACTGAT
GTACGGATGCGGAGCACCGCGTCTCAAAACCTCCGCGAAAAAGACCGAAC
GAGCCCCGGAACGTCTCACCGCCCCCGCTGTATCGATCCTTTCGCCGCCA
GGCGACGACCGACGGGAGCGAGCAGCTCCGCGAGCAGCAACCGCCAGAGA
CCCCAACGGAACAACAACGCGAGGCGGCCAGAGGCAGGCAGCTGAACATC
GCATGCAACGATGTCGTTCGTACCATCCTCGACGGCAACCCCAGCAACGA
GAAAGAGAGGGCGGAGGCCCTAAGAGAAAGACTGCTCGCGCAGAGGGACG
AACTCGTTTCTCCGGACGACAGGATGTCAGCCCTCTTCTTCGACAACCTG
CTTCTCGTGTGCCAGCACGAGCTGCACCCGGATATCGGCGTCCTGCGGGG
TCAATACGGGAAGGCGTGGCACACGATCCTGCACTACATCGAGGACGCGG
GGTGGCAGCTCACGGATCCACCGTTTTCGATCTCGGGATAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1219:26534..27624-

>mRNA_H-canaliculatus_F_contig1219.1883.1 ID=mRNA_H-canaliculatus_F_contig1219.1883.1|Name=mRNA_H-canaliculatus_F_contig1219.1883.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1236bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1219:26534..27624- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGCCTCGTGGAACACGGTCGGTGGTTGTAATATTTTGTTCGTGTGT
TATGCTACCATTGTTAAGCTCCGCGTTCGTCGTTGTACCATCAAGCGTTT
CGGCCTCTCGACGCGCACTGTGGTCTCGTCATGCAGATGCGGTGCAACTG
AGCGGTACCCCTGTTGTGCGTCGTGCACGAAGCTTGCCTGGAAAGCGACC
AACAGGAGTGAAAGTGACCGTGCTAGAGATGCTGCCTCGTGGAACACGGT
CGGTGGTTGTAATATTTTGTTCGTGTGTTATGCTACCATTGTTAAGCTCC
GCGTTCGTCGTTGTACCATCAAGCGTTTCGGCCTCTCGACGCGCACTGTG
GTCTCGTCATGCAGATGCGGTGCAACTGAGCGGTACCCCTGTTGTGCGTC
GTGCACGAAGCTTGCCTGGAAAGCGACCAACAGGAGTGAAAGTGACCGTG
CTAGAGGCGACGACCGACGGGAGCGAGCAGCTCCGCGAGCAGCAACCGCC
AGAGACCCCAACGGAACAACAACGCGAGGCGGCCAGAGGCAGGCAGCTGA
ACATCGCATGCAACGATGTCGTTCGTACCATCCTCGACGGCAACCCCAGC
AACGAGAAAGAGAGGGCGGAGGCCCTAAGAGAAAGACTGCTCGCGCAGAG
GGACGAACTCGTTTCTCCGGACGACAGGATGTCAGCCCTCTTCTTCGACA
ACCTGCTTCTCGTGTGCCAGCACGAGCTGCACCCGGATATCGGCGTCCTG
CGGGGTCAATACGGGAAGGCGTGGCACACGATCCTGCACTACATCGAGGA
CGCGGGGTGGCAGCTCACGGATCCACCGTTTTCGATCTCGGGATAGGCGA
CGACCGACGGGAGCGAGCAGCTCCGCGAGCAGCAACCGCCAGAGACCCCA
ACGGAACAACAACGCGAGGCGGCCAGAGGCAGGCAGCTGAACATCGCATG
CAACGATGTCGTTCGTACCATCCTCGACGGCAACCCCAGCAACGAGAAAG
AGAGGGCGGAGGCCCTAAGAGAAAGACTGCTCGCGCAGAGGGACGAACTC
GTTTCTCCGGACGACAGGATGTCAGCCCTCTTCTTCGACAACCTGCTTCT
CGTGTGCCAGCACGAGCTGCACCCGGATATCGGCGTCCTGCGGGGTCAAT
ACGGGAAGGCGTGGCACACGATCCTGCACTACATCGAGGACGCGGGGTGG
CAGCTCACGGATCCACCGTTTTCGATCTCGGGATAG
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