mRNA_H-canaliculatus_F_contig12148.1856.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12148.1856.1
Unique NamemRNA_H-canaliculatus_F_contig12148.1856.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12148.1856.1 vs. uniprot
Match: D7G2G7_ECTSI (Predicted: Tubulin-tyrosine ligase-related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G7_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 3.150e-36
Identity = 73/95 (76.84%), Postives = 77/95 (81.05%), Query Frame = 1
Query:    1 RAMILSVFKAAARQQPGMACPRARAIYGCDVMVTEDLEPRLLEVTFSPGNLAASPAWPVSAGFLCGHEAVQQPDFLNEAFGCLFLGEQKNVTRLS 285
            RAMILSVF+AAARQQPGM    ARA+YGCDVMVT  LEPRLLEVTFSPGNLAASPAW            VQ+PDFLNEAFGCLFLGEQKNVTRL+
Sbjct:  637 RAMILSVFRAAARQQPGMRNGSARAMYGCDVMVTAALEPRLLEVTFSPGNLAASPAW-----------TVQRPDFLNEAFGCLFLGEQKNVTRLA 720          
BLAST of mRNA_H-canaliculatus_F_contig12148.1856.1 vs. uniprot
Match: A0A6H5KI06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI06_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.140e-35
Identity = 72/95 (75.79%), Postives = 76/95 (80.00%), Query Frame = 1
Query:    1 RAMILSVFKAAARQQPGMACPRARAIYGCDVMVTEDLEPRLLEVTFSPGNLAASPAWPVSAGFLCGHEAVQQPDFLNEAFGCLFLGEQKNVTRLS 285
            RAMILSVF+AA RQQPGM    ARA+YGCDVMVT  LEPRLLEVTFSPGNLAASPAW            VQ+PDFLNEAFGCLFLGEQKNVTRL+
Sbjct:  645 RAMILSVFRAATRQQPGMRNGSARAMYGCDVMVTAALEPRLLEVTFSPGNLAASPAW-----------TVQRPDFLNEAFGCLFLGEQKNVTRLA 728          
BLAST of mRNA_H-canaliculatus_F_contig12148.1856.1 vs. uniprot
Match: A0A388KR02_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KR02_CHABU)

HSP 1 Score: 80.1 bits (196), Expect = 1.770e-15
Identity = 43/94 (45.74%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    1 RAMILSVFKAAARQQPGMACPRARAIYGCDVMVTEDLEPRLLEVTFSPGNLAASPAWPVSAGFLCGHEAVQQPDFLNEAFGCLFLGEQKNVTRL 282
            +AM   VF+ AA  QP M C  ARAIYGCDVM+ E+++P+LLEVT+ P     +  +      L     +   +F N  FGCLFL E+KNVT L
Sbjct:  631 KAMFREVFEGAAMVQPDMHCEYARAIYGCDVMLDENMQPKLLEVTYCPD---CTRGFTFEMTRLSDGAIIDPKEFYNTIFGCLFLDERKNVTSL 721          
BLAST of mRNA_H-canaliculatus_F_contig12148.1856.1 vs. uniprot
Match: A0A3S6KFN5_9SPER (Putative tubulin-tyrosine ligase n=17 Tax=Cupressaceae TaxID=3367 RepID=A0A3S6KFN5_9SPER)

HSP 1 Score: 78.2 bits (191), Expect = 8.470e-15
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 1
Query:    1 RAMILSVFKAAARQQPGMACPRARAIYGCDVMVTEDLEPRLLEVTFSPGNLAASPAWPVSAGFLCGHEAVQQPDFLNEAFGCLFLGEQKNVTRL 282
            RAMI +VF++A+   P M CP ARAIYG DVM+  + +P+LLEVT+ P    A   + V A    G E ++  +F N+ FGCLFL + ++V++L
Sbjct:  777 RAMIRAVFESASALHPEMHCPTARAIYGVDVMIDSEFQPKLLEVTYCPDCTRAC-KYDVKAVVGSG-EIIKGSEFFNDIFGCLFLNDSRHVSQL 868          
BLAST of mRNA_H-canaliculatus_F_contig12148.1856.1 vs. uniprot
Match: A0A6A6KE47_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6KE47_HEVBR)

HSP 1 Score: 73.2 bits (178), Expect = 4.790e-13
Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = 1
Query:    1 RAMILSVFKAAARQQPGMACPRARAIYGCDVMVTEDLEPRLLEVTFSPGNLAASPAWPVSAGFLCGHEAVQQPDFLNEAFGCLFLGEQKNVTRL 282
            +AMI SVF+AAA+  P M  P +RA+YG DVM+     P+LLEVT+ P    A      +   L   E ++  DF+N  FGCLFL E  NV+ L
Sbjct:  604 KAMIRSVFEAAAQVHPEMHSPTSRAMYGVDVMLDRSFRPKLLEVTYCPDCTRACKY--DTRSILGDGEIIKGQDFINYVFGCLFLDETTNVSPL 695          
BLAST of mRNA_H-canaliculatus_F_contig12148.1856.1 vs. uniprot
Match: UPI000B79A6E7 (LOW QUALITY PROTEIN: tubulin--tyrosine ligase-like protein 12 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B79A6E7)

HSP 1 Score: 73.2 bits (178), Expect = 4.860e-13
Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = 1
Query:    1 RAMILSVFKAAARQQPGMACPRARAIYGCDVMVTEDLEPRLLEVTFSPGNLAASPAWPVSAGFLCGHEAVQQPDFLNEAFGCLFLGEQKNVTRL 282
            +AMI SVF+AAA+  P M  P +RA+YG DVM+     P+LLEVT+ P    A      +   L   E ++  DF+N  FGCLFL E  NV+ L
Sbjct:  778 KAMIRSVFEAAAQVHPEMHSPTSRAMYGVDVMLDRSFRPKLLEVTYCPDCTRACKY--DTRSILGDGEIIKGQDFINYVFGCLFLDETTNVSPL 869          
BLAST of mRNA_H-canaliculatus_F_contig12148.1856.1 vs. uniprot
Match: UPI00125E4C8B (tubulin--tyrosine ligase-like protein 12 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125E4C8B)

HSP 1 Score: 71.2 bits (173), Expect = 2.300e-12
Identity = 42/94 (44.68%), Postives = 58/94 (61.70%), Query Frame = 1
Query:    1 RAMILSVFKAAARQQPGMACPRARAIYGCDVMVTEDLEPRLLEVTFSPGNLAASPAWPVSAGFLCGHEAVQQPDFLNEAFGCLFLGEQKNVTRL 282
            R+MI SVF++AA   P M  P++RA+YG DVM+  + +P+LLEVT+ P    A   +   A  + G E V+  DF N  FGCLFL E  +V+ L
Sbjct:  771 RSMIRSVFESAASVHPEMHHPKSRAMYGVDVMLDSNFQPKLLEVTYCPDCKRAC-TYDTEA-VVKGGETVKGRDFYNYVFGCLFLDETNHVSPL 862          
BLAST of mRNA_H-canaliculatus_F_contig12148.1856.1 vs. uniprot
Match: A0A8J8NA98_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NA98_HALGN)

HSP 1 Score: 70.5 bits (171), Expect = 4.170e-12
Identity = 33/79 (41.77%), Postives = 44/79 (55.70%), Query Frame = 1
Query:   46 PGMACPRARAIYGCDVMVTEDLEPRLLEVTFSPGNLAASPAWPVSAGFLCGHEAVQQPDFLNEAFGCLFLGEQKNVTRL 282
            PG A  R RA+YG DVM+T+D +P++LEVTF P                CG      P F NE FGCL+  ++KN+ R+
Sbjct:  493 PGEASRRCRAMYGVDVMITDDYQPKILEVTFQPD---------------CGRACKFNPSFFNEVFGCLYFNDEKNMIRI 556          
BLAST of mRNA_H-canaliculatus_F_contig12148.1856.1 vs. uniprot
Match: A0A162AM84_DAUCS (Uncharacterized protein n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A162AM84_DAUCS)

HSP 1 Score: 66.6 bits (161), Expect = 9.700e-11
Identity = 40/95 (42.11%), Postives = 55/95 (57.89%), Query Frame = 1
Query:    1 RAMILSVFKAAARQQPGMACPRARAIYGCDVMVTEDLEPRLLEVTFSPG-NLAASPAWPVSAGFLCGHEAVQQPDFLNEAFGCLFLGEQKNVTRL 282
            R MI S F++AA   P M  P +RA+YG DVM+  + +P+LLEVT+ P  N A    +   +      E V+  DF N  FGCLFL E  +V++L
Sbjct:  784 RGMIKSAFESAALVHPEMHNPMSRAMYGVDVMLDTNFQPKLLEVTYCPDCNRACK--YDTKSVLRGETETVKGQDFYNYVFGCLFLNETAHVSQL 876          
BLAST of mRNA_H-canaliculatus_F_contig12148.1856.1 vs. uniprot
Match: J9IQP0_9SPIT (Uncharacterized protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IQP0_9SPIT)

HSP 1 Score: 65.9 bits (159), Expect = 1.810e-10
Identity = 32/73 (43.84%), Postives = 40/73 (54.79%), Query Frame = 1
Query:   64 RARAIYGCDVMVTEDLEPRLLEVTFSPGNLAASPAWPVSAGFLCGHEAVQQPDFLNEAFGCLFLGEQKNVTRL 282
            + R+IYG D+MV +  EP++LE TFSP                C       PDF NE FGCLFL E KNVT++
Sbjct:  806 KCRSIYGVDIMVNDQFEPKILEATFSPD---------------CKRACRFNPDFFNEVFGCLFLNETKNVTKI 863          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12148.1856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7G2G7_ECTSI3.150e-3676.84Predicted: Tubulin-tyrosine ligase-related protein... [more]
A0A6H5KI06_9PHAE1.140e-3575.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A388KR02_CHABU1.770e-1545.74Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A3S6KFN5_9SPER8.470e-1544.68Putative tubulin-tyrosine ligase n=17 Tax=Cupressa... [more]
A0A6A6KE47_HEVBR4.790e-1344.68Uncharacterized protein n=1 Tax=Hevea brasiliensis... [more]
UPI000B79A6E74.860e-1344.68LOW QUALITY PROTEIN: tubulin--tyrosine ligase-like... [more]
UPI00125E4C8B2.300e-1244.68tubulin--tyrosine ligase-like protein 12 n=2 Tax=I... [more]
A0A8J8NA98_HALGN4.170e-1241.77Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
A0A162AM84_DAUCS9.700e-1142.11Uncharacterized protein n=2 Tax=Daucus carota subs... [more]
J9IQP0_9SPIT1.810e-1043.84Uncharacterized protein n=1 Tax=Oxytricha trifalla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12148contigH-canaliculatus_F_contig12148:180..1034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.1
Seed ortholog evalue4.2e-30
Seed eggNOG ortholog2880.D7G2G7
KEGG koko:K16609
EggNOG free text desc.ATP binding
EggNOG OGsKOG2155@1,KOG2155@2759
Ec32 ortholog descriptionPredicted: Tubulin-tyrosine ligase-related protein
Ec32 orthologEc-00_005910.3
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12148.1856.1prot_H-canaliculatus_F_contig12148.1856.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12148 186..1034 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.3770297-UTR-H-canaliculatus_F_contig12148:179..1851622928928.3770297-UTR-H-canaliculatus_F_contig12148:179..185Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12148 180..185 +
1696845615.9186356-UTR-H-canaliculatus_F_contig12148:179..1851696845615.9186356-UTR-H-canaliculatus_F_contig12148:179..185Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12148 180..185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.3920522-CDS-H-canaliculatus_F_contig12148:185..3861622928928.3920522-CDS-H-canaliculatus_F_contig12148:185..386Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12148 186..386 +
1696845615.9298356-CDS-H-canaliculatus_F_contig12148:185..3861696845615.9298356-CDS-H-canaliculatus_F_contig12148:185..386Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12148 186..386 +
1622928928.4032133-CDS-H-canaliculatus_F_contig12148:953..10341622928928.4032133-CDS-H-canaliculatus_F_contig12148:953..1034Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12148 954..1034 +
1696845615.9394414-CDS-H-canaliculatus_F_contig12148:953..10341696845615.9394414-CDS-H-canaliculatus_F_contig12148:953..1034Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12148 954..1034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12148.1856.1

>prot_H-canaliculatus_F_contig12148.1856.1 ID=prot_H-canaliculatus_F_contig12148.1856.1|Name=mRNA_H-canaliculatus_F_contig12148.1856.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=94bp
MILSVFKAAARQQPGMACPRARAIYGCDVMVTEDLEPRLLEVTFSPGNLA
ASPAWPVSAGFLCGHEAVQQPDFLNEAFGCLFLGEQKNVTRLS*
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mRNA from alignment at H-canaliculatus_F_contig12148:180..1034+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12148.1856.1 ID=mRNA_H-canaliculatus_F_contig12148.1856.1|Name=mRNA_H-canaliculatus_F_contig12148.1856.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=855bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12148:180..1034+ (Hapterophycus canaliculatus Oshoro5f female)
AGAGCTATGATCCTTTCGGTGTTCAAGGCAGCGGCAAGGCAGCAGCCCGG CATGGCGTGCCCTCGCGCCAGAGCGATTTACGGCTGCGACGTGATGGTGA CGGAGGACCTGGAGCCGCGGCTGCTGGAGGTTACGTTTTCTCCCGGAAAC CTAGCTGCTTCGCCCGCGTGGCCGGTGAGCGCCGGCTTCCTTTGTGGACA CGAAGCTGTGTTGTTGTTGTTGTTGTTGTTGTTATCGGTGTTGCTGCTAT GAGAAACCTTTTATCTAGGGACGCTCATCCGTTTTTTCTTCTACAACTTC ACCCCACCATGATGGTTATTTTCAGCCTTACTTAGCGGAAGCAAGACGAG TCGTTTTACATCAAAAAGAGCCGGTGGTGCTTACATGATACTCACGAACT TGGGCGTTCCTCTTTGGCTCCACTACGAGGAGAGAGAAGTTGGTCATCAA CAACGTGCCCCCGTCACATTAGGTCAGAATCTACTGCCGTGTGTTTCATC GAAACAGGAGGGGTTTGGACGGCCCATTCGCGCTGTTTTTTGTTGTAAGC AGGGAGCACGCAGTCCCCCCATCGCCTTGCACCACAGGCTCCTGCCCTGT CGCTCGTGAATACTTCTGTGCGTAGGATTGGGAATTAACGGAAACATAAC GAAAACCTCGTCGGTCCACATGGACCAGGACCCGCGGCTACGACGGCTCA ATCACGATTGCTAAAAAAACAAAGTTTTCCTCGGCGCCCCCTCTGCCTCT CTTGTTCTTGTTACCTGTCCGCAGGTCCAGCAGCCAGATTTCTTGAACGA GGCGTTCGGCTGCCTGTTCCTCGGGGAGCAGAAGAATGTTACCCGCTTAT CGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12148:180..1034+

>mRNA_H-canaliculatus_F_contig12148.1856.1 ID=mRNA_H-canaliculatus_F_contig12148.1856.1|Name=mRNA_H-canaliculatus_F_contig12148.1856.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=564bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12148:180..1034+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATCCTTTCGGTGTTCAAGGCAGCGGCAAGGCAGCAGCCCGGCATGGC
GTGCCCTCGCGCCAGAGCGATTTACGGCTGCGACGTGATGGTGACGGAGG
ACCTGGAGCCGCGGCTGCTGGAGGTTACGTTTTCTCCCGGAAACCTAGCT
GCTTCGCCCGCGTGGCCGGTGAGCGCCGGCTTCCTTTGTGGACACGAAGC
TATGATCCTTTCGGTGTTCAAGGCAGCGGCAAGGCAGCAGCCCGGCATGG
CGTGCCCTCGCGCCAGAGCGATTTACGGCTGCGACGTGATGGTGACGGAG
GACCTGGAGCCGCGGCTGCTGGAGGTTACGTTTTCTCCCGGAAACCTAGC
TGCTTCGCCCGCGTGGCCGGTGAGCGCCGGCTTCCTTTGTGGACACGAAG
CTGTCCAGCAGCCAGATTTCTTGAACGAGGCGTTCGGCTGCCTGTTCCTC
GGGGAGCAGAAGAATGTTACCCGCTTATCGTGAGTCCAGCAGCCAGATTT
CTTGAACGAGGCGTTCGGCTGCCTGTTCCTCGGGGAGCAGAAGAATGTTA
CCCGCTTATCGTGA
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